genome.fa.s13.2.7.7.80.10.50.1000.276.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  276  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92156896--92157072	39	4.5	39	85	2	203	41	22	6	29	1.78
92157255--92157362	50	2.2	50	94	0	189	30	30	10	28	1.90
92162140--92162192	26	2.0	26	100	0	106	18	11	22	47	1.81
92174034--92174092	30	1.9	31	86	3	84	28	20	1	49	1.59
92183740--92183809	34	2.1	34	94	0	122	35	20	5	38	1.76
92205165--92205211	20	2.3	20	96	0	85	25	10	4	59	1.49
92208354--92208398	23	1.9	24	90	4	74	24	13	11	51	1.73
92208962--92209047	42	2.0	42	100	0	172	46	11	11	30	1.76
92209326--92209369	23	1.9	23	85	0	61	61	13	4	20	1.50
92216718--92216742	13	1.9	13	100	0	50	36	8	8	48	1.62
92219690--92219793	52	2.0	52	98	0	199	25	24	0	50	1.50
92219880--92219914	8	4.4	8	86	13	54	37	0	0	62	0.95
92219874--92219916	13	3.1	13	81	18	59	37	0	0	62	0.95
92222418--92222449	16	2.0	16	100	0	64	18	6	31	43	1.75
92223632--92223683	25	2.0	25	88	3	77	75	3	0	21	0.97
92225793--92225824	13	2.5	13	100	0	64	18	40	28	12	1.87
92230491--92230515	10	2.5	10	100	0	50	72	0	0	28	0.86
92230740--92230911	60	2.8	59	77	13	156	26	25	20	26	1.99
92241351--92241396	8	5.5	8	82	17	58	36	0	0	63	0.95
92241357--92241398	13	3.0	13	81	18	57	38	0	0	61	0.96
92241352--92241398	5	9.6	5	78	21	55	38	0	0	61	0.96
92243925--92243987	29	2.2	29	88	0	90	39	14	17	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92243902--92244028	66	2.0	64	82	6	157	39	13	17	29	1.88
92247165--92247212	14	3.4	14	71	5	51	52	12	4	31	1.58
92247155--92247213	29	2.0	29	100	0	118	49	13	3	33	1.59
92251905--92251939	10	3.6	10	92	3	54	48	0	48	2	1.16
92255682--92255745	28	2.2	30	86	13	91	37	4	1	56	1.30
92255695--92255753	28	2.1	28	87	6	84	37	5	3	54	1.39
92257053--92257127	33	2.3	33	88	4	107	34	2	18	44	1.64
92257064--92257129	33	2.0	33	94	2	116	33	3	21	42	1.68
92261408--92261469	33	1.9	33	90	3	99	37	4	19	38	1.73
92266088--92266118	16	1.9	16	93	0	53	35	22	0	41	1.54
92266085--92266124	20	2.0	20	85	0	53	37	22	0	40	1.54
92268751--92268866	53	2.1	55	81	6	139	22	23	20	33	1.97
92273772--92274024	68	3.9	63	76	10	197	28	16	30	24	1.97
92277479--92277539	30	2.0	30	83	0	77	39	6	24	29	1.80
92296946--92297001	20	2.8	20	86	0	76	50	1	30	17	1.57
92303810--92303971	24	6.8	24	68	8	96	27	14	25	32	1.94
92307740--92307872	18	7.5	18	87	5	191	39	12	12	36	1.81
92307731--92307872	35	4.0	35	94	2	230	38	11	13	36	1.80
92308353--92308412	17	3.5	17	74	21	63	33	1	0	65	1.03
92308354--92308412	16	3.5	16	76	23	59	33	1	0	64	1.04
92308389--92308438	26	1.9	26	83	0	64	36	4	0	60	1.16
92315113--92315287	44	4.0	44	74	8	158	31	16	23	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92315276--92315875	119	5.0	119	95	0	1038	33	18	18	29	1.95
92315799--92316151	83	4.2	83	94	0	607	32	20	19	27	1.97
92316539--92316680	35	4.0	35	93	2	221	38	9	12	38	1.77
92316548--92316680	18	7.5	18	86	5	191	39	10	12	38	1.77
92317164--92317220	15	3.4	17	71	24	50	35	1	0	63	1.05
92317197--92317245	26	1.9	25	83	4	62	36	4	0	59	1.17
92332165--92332355	96	2.0	96	86	2	267	21	19	24	34	1.96
92338872--92338935	28	2.3	28	76	10	69	70	3	4	21	1.20
92339963--92340000	19	2.0	19	100	0	76	47	31	0	21	1.51
92340032--92340086	26	2.2	24	82	14	76	32	9	34	23	1.86
92340040--92340093	26	2.1	26	100	0	108	35	7	31	25	1.84
92356272--92356329	30	1.9	30	89	0	89	15	32	36	15	1.89
92357922--92358149	114	2.0	114	98	1	440	40	13	6	39	1.70
92359358--92359682	160	2.0	160	92	2	537	32	18	13	35	1.90
92359875--92359925	22	2.3	23	74	19	54	54	3	5	35	1.43
92359980--92360016	17	2.2	17	90	0	56	51	0	10	37	1.37
92365108--92365160	21	2.5	21	85	14	65	47	1	3	47	1.31
92365559--92365637	40	2.0	40	97	0	149	37	22	15	24	1.92
92381365--92381446	37	2.2	37	84	0	110	42	30	12	14	1.82
92383299--92383353	18	3.1	18	91	0	92	41	16	21	20	1.90
92385781--92385956	46	3.8	46	79	12	216	20	21	29	28	1.98
92385778--92385949	93	1.8	93	96	0	317	20	21	29	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92393308--92393483	46	3.8	46	75	12	189	20	20	29	29	1.98
92393305--92393476	93	1.8	93	92	0	290	20	20	29	28	1.98
92394843--92394880	14	2.9	13	81	11	51	57	10	13	18	1.63
92399851--92399948	49	2.0	49	97	0	187	26	7	24	41	1.80
92404073--92404110	14	2.9	13	81	11	51	57	10	13	18	1.63
92408333--92408376	22	1.9	24	86	9	65	59	0	15	25	1.37
92408802--92408980	37	4.9	37	84	4	211	22	12	22	41	1.88
92409708--92409779	34	2.1	34	97	0	135	36	5	22	36	1.78
92410670--92410696	13	2.1	13	100	0	54	7	7	22	62	1.46
92419570--92419626	24	2.2	26	75	18	64	50	12	8	28	1.69
92419580--92419627	24	2.0	25	95	4	89	50	16	10	22	1.76
92419941--92419973	15	2.1	16	94	5	59	69	0	6	24	1.10
92419943--92419973	16	1.9	16	93	0	53	70	0	6	22	1.09
92420710--92420772	28	2.2	28	91	0	99	31	6	30	31	1.83
92421000--92421077	36	2.2	36	90	0	120	58	5	2	33	1.33
92425446--92425501	21	2.7	21	91	0	85	30	8	32	28	1.88
92427409--92427462	7	7.6	7	86	12	74	57	0	0	42	0.98
92427890--92427948	30	1.9	30	82	3	73	47	3	22	27	1.67
92430045--92430082	19	2.0	19	100	0	76	47	10	10	31	1.72
92432450--92432481	15	2.1	15	100	0	64	40	0	37	21	1.54
92434677--92434725	7	7.0	7	100	0	98	42	0	0	57	0.99
92439123--92439152	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92439277--92439315	12	3.4	12	79	13	55	33	7	0	58	1.26
92439275--92439315	22	1.9	21	89	0	55	34	9	0	56	1.32
92440142--92440208	33	2.0	33	97	0	125	22	14	25	37	1.93
92444267--92444312	23	2.0	23	100	0	92	34	8	34	21	1.84
92453313--92453364	22	2.3	22	86	3	68	28	5	5	59	1.44
92466838--92466871	17	2.0	17	100	0	68	58	0	23	17	1.38
92478089--92478121	17	1.9	17	100	0	66	24	18	18	39	1.92
92479221--92479245	12	2.1	12	100	0	50	76	0	16	8	1.02
92479823--92479863	20	2.0	20	95	0	73	53	9	21	14	1.70
92481382--92481527	72	2.0	72	94	2	258	32	14	23	30	1.94
92485540--92485785	55	4.6	53	78	9	227	36	17	23	22	1.94
92485548--92485748	108	1.8	110	86	6	293	35	16	24	23	1.95
92487066--92487144	40	2.0	40	87	5	115	35	22	15	26	1.94
92489490--92489551	30	2.1	30	82	17	76	29	16	8	46	1.75
92489700--92489816	25	4.7	25	78	16	89	32	21	21	24	1.98
92489704--92489817	50	2.3	51	87	3	160	32	21	21	23	1.98
92494213--92494264	25	2.1	25	100	0	104	51	7	17	23	1.70
92494271--92494374	53	2.0	53	100	0	208	33	11	9	45	1.73
92496032--92496124	46	2.0	46	97	0	177	24	6	22	46	1.75
92497904--92497960	20	2.9	20	85	10	66	40	8	17	33	1.81
92498010--92498132	26	4.8	26	95	1	214	25	22	24	27	2.00
92499180--92499251	23	3.1	22	78	7	81	12	4	34	48	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92499238--92499263	12	2.2	12	100	0	52	15	0	26	57	1.38
92499250--92499358	23	4.9	22	74	14	89	15	2	33	47	1.60
92499216--92499283	34	2.0	35	94	2	120	14	1	32	51	1.52
92499192--92499307	57	2.0	58	88	1	171	13	2	33	50	1.56
92499180--92499330	80	1.9	80	83	5	198	14	2	34	48	1.58
92502109--92502274	24	6.9	24	74	5	129	21	7	13	58	1.59
92502121--92502274	6	25.7	6	73	5	105	20	6	13	59	1.57
92503861--92503915	26	2.1	27	86	6	78	23	14	23	38	1.92
92505397--92505489	32	2.9	32	96	0	168	36	23	8	31	1.85
92505617--92505644	10	2.8	10	100	0	56	35	21	0	42	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332