genome.fa.s13.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  95  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30518328--30518368	15	2.9	15	82	17	52	56	0	2	41	1.13
30520404--30520471	31	2.2	31	86	5	93	42	5	2	48	1.42
30524754--30524848	39	2.5	39	73	20	92	48	1	1	49	1.15
30525299--30525340	19	2.3	19	84	8	52	40	2	23	33	1.68
30525554--30525610	22	2.6	22	83	8	80	14	24	19	42	1.88
30540103--30540164	12	5.2	12	74	18	58	19	3	1	75	1.02
30540135--30540166	3	11.3	3	87	12	50	28	0	0	71	0.86
30541591--30541621	16	1.9	16	93	0	53	51	3	0	45	1.17
30541706--30541916	41	5.2	41	83	1	228	36	23	19	20	1.95
30542220--30542284	7	9.0	7	73	9	51	20	0	43	36	1.52
30545657--30545747	29	3.1	29	95	1	164	29	7	13	49	1.69
30547407--30547445	18	2.1	18	90	4	60	25	0	2	71	0.98
30553430--30553781	188	1.9	188	91	0	578	35	11	17	35	1.85
30557616--30557658	20	2.1	21	83	12	54	79	0	16	4	0.90
30557866--30558503	213	3.0	213	90	0	974	21	20	23	34	1.97
30560897--30560966	27	2.6	26	95	2	95	31	28	12	27	1.93
30560897--30560994	28	3.5	28	90	2	135	31	28	13	26	1.94
30561441--30561466	12	2.2	12	100	0	52	42	0	7	50	1.31
30569302--30569400	29	3.5	28	87	5	128	32	28	13	26	1.93
30569848--30569874	12	2.2	12	100	0	54	40	0	7	51	1.30
30576138--30576371	91	2.6	91	84	0	297	34	25	14	24	1.94
30578108--30578180	38	1.9	38	97	0	137	32	2	17	46	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30583407--30583447	6	6.5	6	89	10	64	68	0	17	14	1.22
30589046--30589372	96	3.4	97	79	9	334	23	29	19	27	1.98
30589044--30589326	48	5.9	48	80	8	290	23	30	18	27	1.98
30589048--30589366	142	2.2	142	80	8	337	23	29	19	27	1.98
30591598--30591639	21	2.0	22	90	4	68	35	11	11	40	1.79
30591756--30591800	21	2.3	19	84	7	54	37	6	11	44	1.66
30596011--30596190	46	3.9	46	74	12	156	25	29	16	28	1.97
30599852--30599894	21	2.0	21	82	8	52	53	4	2	39	1.34
30610725--30610864	72	1.9	72	94	0	244	37	24	7	30	1.84
30612448--30612526	34	2.3	35	84	6	99	30	6	15	48	1.70
30615519--30615644	46	2.7	46	96	0	225	20	20	28	30	1.98
30623094--30623338	40	6.2	40	92	3	338	23	22	27	26	2.00
30627387--30627434	23	2.1	23	100	0	96	22	4	20	52	1.64
30630041--30630072	16	2.0	16	93	0	55	46	0	18	34	1.49
30633505--30633558	25	2.1	26	82	6	65	70	11	5	12	1.32
30635255--30635314	16	3.9	15	72	22	52	70	1	6	21	1.20
30639624--30639675	10	5.1	10	86	11	61	61	3	0	34	1.14
30639633--30639676	22	2.0	22	95	0	79	59	2	0	38	1.10
30643216--30643256	16	2.6	15	84	7	55	48	0	2	48	1.14
30644081--30644151	34	2.1	34	97	0	133	26	19	22	30	1.98
30647953--30647999	10	4.6	10	82	12	60	61	2	0	36	1.08
30651506--30651541	16	2.2	16	90	0	54	55	13	16	13	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30656499--30656542	11	3.9	11	79	5	52	59	4	0	36	1.18
30661161--30661271	43	2.6	43	71	4	100	26	23	21	28	1.99
30664329--30664448	46	2.6	47	85	2	152	26	22	15	35	1.93
30668655--30668761	48	2.3	46	83	3	133	29	20	14	34	1.93
30668655--30668774	46	2.5	48	85	2	154	27	21	15	35	1.93
30671446--30671483	19	2.0	20	89	5	60	28	10	0	60	1.30
30672701--30672739	12	3.3	12	82	7	53	61	2	0	35	1.10
30673155--30673198	21	2.1	21	83	8	54	11	18	0	70	1.16
30679453--30679505	24	2.2	24	96	0	97	11	30	11	47	1.74
30683692--30683766	22	3.4	22	92	3	116	25	38	10	25	1.88
30683711--30683769	11	5.4	11	75	0	64	23	38	8	28	1.84
30685435--30685474	11	3.6	11	93	0	62	72	5	5	17	1.21
30685457--30685483	14	1.9	14	100	0	54	70	0	7	22	1.12
30690010--30690163	28	5.5	28	91	1	229	27	12	27	33	1.92
30701320--30701352	5	6.6	5	100	0	66	81	0	0	18	0.68
30701677--30702024	50	6.9	50	79	4	369	29	25	18	26	1.98
30701662--30702011	100	3.5	99	82	4	436	29	26	18	26	1.98
30701664--30702022	151	2.4	150	82	6	447	29	25	18	25	1.98
30702372--30702418	19	2.3	20	82	10	60	48	14	0	36	1.44
30712812--30712848	19	1.9	19	100	0	74	37	5	29	27	1.79
30713253--30713290	20	2.0	20	89	5	60	57	0	13	28	1.36
30717680--30718233	284	2.0	284	93	0	946	27	19	21	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30726659--30726710	20	2.6	20	93	0	95	23	32	28	15	1.95
30741863--30741900	19	2.0	20	85	15	53	36	0	23	39	1.55
30749035--30749207	46	3.7	46	79	13	210	21	20	28	29	1.98
30749032--30749202	93	1.8	93	94	0	306	21	21	29	28	1.98
30749432--30749469	19	2.0	20	85	15	53	36	0	23	39	1.55
30757724--30757764	22	1.9	21	90	5	64	21	2	4	70	1.18
30758567--30758606	21	2.0	20	90	5	62	20	27	40	12	1.88
30760646--30761003	140	2.5	141	78	12	369	24	28	19	27	1.98
30760640--30761003	46	7.7	47	72	14	236	24	28	19	27	1.98
30762780--30762908	50	2.6	50	83	8	165	25	31	18	24	1.97
30762772--30763040	46	5.6	48	79	11	222	25	30	17	26	1.97
30777724--30777841	43	2.8	42	81	7	148	30	14	25	29	1.95
30779429--30779632	31	6.6	31	90	1	311	27	18	26	27	1.98
30779429--30779695	93	2.9	93	83	6	323	28	17	26	26	1.97
30779626--30779710	29	2.9	29	94	0	143	31	14	28	25	1.94
30779703--30779961	33	7.9	33	91	2	265	33	10	22	32	1.89
30779703--30779839	32	4.2	32	95	0	229	30	11	22	35	1.90
30779760--30779819	19	3.5	19	65	25	60	30	13	20	36	1.90
30779703--30779959	64	4.0	64	86	5	286	33	10	22	33	1.88
30782395--30782448	10	5.5	10	82	2	65	62	1	9	25	1.35
30785239--30785509	48	5.7	47	76	11	241	26	19	29	25	1.99
30785229--30785509	96	2.9	95	83	5	334	26	18	28	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30790798--30790913	43	2.7	42	79	7	144	32	15	23	28	1.95
30800855--30800903	25	1.9	26	83	4	64	48	8	4	38	1.52
30801890--30801947	27	2.1	27	84	15	75	15	5	13	65	1.43
30805940--30806124	79	2.3	82	83	7	229	25	27	22	24	2.00
30805921--30806124	40	5.1	40	81	8	229	25	26	22	25	2.00
30812499--30812538	18	2.2	19	90	4	64	40	0	0	60	0.97
30814925--30814982	29	2.0	29	87	9	84	17	39	20	22	1.92
30815485--30815512	4	7.0	4	100	0	56	25	0	0	75	0.81
30819340--30819405	32	2.1	31	97	2	123	22	34	27	15	1.94
30820341--30820443	37	2.8	38	83	2	129	26	17	31	25	1.97
30824359--30824428	28	2.5	28	78	0	77	27	15	27	30	1.96
30827030--30827379	46	7.5	47	76	12	253	22	28	20	28	1.99
30826978--30827379	140	2.8	142	87	2	472	22	28	20	28	1.99
30828855--30829063	40	5.3	39	80	6	109	21	30	14	34	1.93
30828890--30828954	20	3.2	20	66	0	58	16	32	16	33	1.92
30828876--30829085	40	5.2	40	85	0	267	20	29	13	36	1.91
30828967--30829075	20	5.4	20	67	4	76	23	32	12	31	1.92
30831227--30831283	30	1.9	30	88	0	87	22	33	31	12	1.91
30841087--30841266	27	6.6	27	85	3	209	26	14	28	30	1.95
30843263--30843331	26	2.8	25	82	6	86	26	21	15	36	1.94
30843265--30843362	23	4.1	23	84	6	99	25	21	16	36	1.94
30843299--30843376	23	3.3	23	75	7	77	26	19	16	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30845926--30846071	43	3.4	43	80	6	154	27	15	24	32	1.96
30847528--30847844	24	13.0	24	91	2	474	26	19	23	30	1.98
30847893--30847959	20	3.3	20	91	0	107	34	20	11	32	1.90
30847988--30848042	25	2.2	25	83	3	65	29	14	21	34	1.93
30847996--30848043	25	1.9	25	91	0	78	25	14	25	35	1.94
30849205--30849269	27	2.4	27	82	5	78	21	24	18	35	1.96
30849323--30849634	27	11.4	27	75	9	116	32	8	19	38	1.83
30849415--30849620	107	1.9	107	79	3	227	30	8	20	40	1.82
30849585--30849742	27	5.9	27	95	0	244	39	8	23	28	1.85
30849575--30849755	81	2.2	81	85	0	263	36	8	23	32	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332