genome.fa.s13.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  96  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30849387--30849756	27	13.7	27	83	3	185	32	8	21	36	1.85
30849558--30849742	54	3.4	54	88	0	262	37	8	23	30	1.85
30852586--30852639	27	2.0	27	89	7	83	44	9	22	24	1.81
30860658--30860803	67	2.2	67	90	2	231	19	29	21	28	1.98
30867113--30867172	27	2.3	27	85	2	77	21	23	20	35	1.96
30875391--30875615	40	5.7	40	80	6	215	24	27	21	25	1.99
30875358--30875615	40	6.5	38	77	9	191	24	27	21	26	1.99
30875547--30875624	40	1.9	41	82	10	97	26	28	20	24	1.99
30881109--30881215	49	2.2	49	93	3	180	28	30	8	32	1.87
30881180--30881249	34	2.1	34	97	0	131	25	27	12	34	1.92
30881214--30881504	49	6.0	49	95	2	527	27	30	8	32	1.88
30881131--30881298	83	2.0	83	97	0	318	26	29	10	33	1.89
30881214--30881504	145	2.0	144	96	2	539	27	30	8	32	1.88
30881214--30881504	96	3.0	96	96	1	537	27	30	8	32	1.88
30893714--30893758	22	2.0	22	83	8	56	28	0	8	62	1.25
30897769--30897866	40	2.3	40	83	10	108	27	28	15	28	1.96
30905909--30905938	15	1.9	16	93	6	53	40	26	0	33	1.57
30906102--30906228	42	3.0	42	77	8	141	28	25	14	31	1.95
30913327--30913366	16	2.3	18	83	12	57	52	32	2	12	1.52
30914688--30914802	29	4.0	28	84	6	133	28	15	27	27	1.96
30915083--30915135	26	2.1	25	82	3	61	41	22	18	16	1.90
30919162--30919368	53	3.8	54	78	1	209	20	24	16	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30919174--30919368	55	3.6	53	77	2	183	20	24	17	37	1.93
30923643--30923677	14	2.5	14	90	0	52	22	48	0	28	1.51
30927648--30927830	39	4.7	39	87	0	249	21	21	26	30	1.98
30932204--30932372	46	3.6	46	77	12	159	30	20	27	21	1.98
30932387--30932563	49	3.6	48	80	8	148	25	18	31	25	1.97
30932204--30932563	47	7.6	47	71	16	187	27	19	29	23	1.98
30932204--30932570	140	2.6	136	74	12	330	28	19	28	23	1.98
30933743--30933781	20	2.0	20	85	10	53	15	41	23	20	1.90
30934333--30934358	9	2.9	9	100	0	52	11	76	0	11	1.01
30939112--30939294	78	2.3	81	83	9	234	24	22	27	25	2.00
30939112--30939294	40	4.6	40	83	10	216	24	22	27	25	2.00
30939164--30939327	78	2.1	77	84	7	206	25	21	26	26	1.99
30947048--30947229	40	4.6	40	79	9	185	26	21	26	25	2.00
30947098--30947252	79	2.0	79	82	7	190	27	21	25	25	1.99
30949063--30949240	40	4.5	40	87	3	218	26	28	23	22	1.99
30957358--30957558	40	5.0	40	90	2	280	27	28	22	21	1.99
30961438--30961464	13	2.1	13	100	0	54	14	7	14	62	1.51
30964254--30964384	65	2.0	65	95	0	235	25	15	16	42	1.87
30965488--30965618	47	2.7	47	78	5	138	27	19	27	25	1.99
30986487--30986538	25	2.1	25	86	13	72	19	23	21	36	1.95
31003515--31003556	21	2.0	21	100	0	84	23	28	4	42	1.74
31005450--31006002	47	11.6	47	95	1	953	31	9	30	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31005450--31006002	143	3.9	142	96	1	957	31	9	30	28	1.89
31005450--31006002	190	2.9	190	98	0	1061	31	9	30	28	1.89
31005969--31006027	25	2.5	24	91	8	86	25	13	35	25	1.93
31005977--31006027	25	2.0	25	100	0	102	23	15	37	23	1.93
31006002--31006093	47	2.0	47	86	0	130	29	10	34	25	1.90
31006215--31006293	37	2.1	37	90	0	122	24	18	31	25	1.98
31008401--31008513	58	1.9	59	81	1	138	40	4	4	50	1.42
31021101--31021154	28	1.9	28	85	7	74	50	7	12	29	1.68
31032790--31032928	55	2.5	55	75	0	143	30	30	25	13	1.94
31036219--31036281	33	1.9	33	96	0	117	26	20	9	42	1.83
31039335--31039512	27	6.6	27	84	3	205	26	14	28	29	1.95
31039335--31039512	54	3.3	55	84	4	227	26	14	28	29	1.95
31047258--31047435	27	6.6	27	84	3	205	26	14	28	29	1.95
31047258--31047435	54	3.3	55	84	4	227	26	14	28	29	1.95
31049557--31049631	26	2.9	25	88	4	105	40	26	17	16	1.90
31049768--31049818	27	1.9	26	88	4	75	25	17	19	37	1.94
31056394--31056489	42	2.3	42	96	0	174	18	34	30	16	1.93
31057789--31057884	48	2.0	48	89	0	147	33	30	15	20	1.94
31060722--31060783	19	3.2	18	74	19	54	12	3	11	72	1.23
31065389--31065498	33	3.3	33	89	3	159	29	23	20	27	1.99
31072510--31072685	46	3.8	46	78	14	200	19	19	30	30	1.97
31072507--31072678	93	1.8	93	92	2	292	20	20	30	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31077850--31077994	40	3.6	40	78	0	119	26	22	25	24	2.00
31100224--31100334	37	3.0	35	76	11	105	38	28	14	18	1.90
31107153--31107192	8	5.0	8	100	0	80	25	0	0	75	0.81
31107153--31107203	24	2.1	24	85	7	68	25	1	1	70	1.08
31120378--31120598	40	5.5	40	84	2	255	26	22	26	24	2.00
31120639--31120676	19	2.0	19	100	0	76	26	5	26	42	1.76
31129568--31129788	40	5.5	40	85	2	282	25	23	26	23	2.00
31129568--31129828	80	3.3	80	82	4	287	25	23	26	24	2.00
31129568--31129828	120	2.2	120	82	4	314	25	23	26	24	2.00
31131368--31131582	47	4.5	47	79	9	175	25	16	29	28	1.97
31131394--31131600	47	4.2	47	84	6	218	23	14	29	31	1.95
31131412--31131600	93	1.9	100	82	9	239	23	15	30	30	1.95
31142876--31142924	16	3.3	16	72	21	52	57	0	14	28	1.38
31143053--31143128	22	3.4	22	75	21	77	64	5	14	15	1.46
31143033--31143128	5	18.2	5	74	16	61	61	5	15	17	1.51
31143036--31143129	11	8.3	11	69	18	50	62	5	14	17	1.49
31143033--31143086	27	2.0	27	85	0	72	59	3	16	20	1.52
31144312--31144721	91	4.6	90	78	6	327	57	12	3	26	1.51
31144491--31144721	91	2.6	91	90	1	358	57	10	3	28	1.47
31150794--31151025	40	5.8	40	85	3	297	25	29	21	24	1.99
31150794--31151025	80	2.9	80	89	1	340	25	29	21	24	1.99
31150765--31151024	120	2.2	120	84	2	335	26	28	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31163999--31164114	42	2.8	42	77	5	119	29	17	25	28	1.97
31165543--31165589	25	2.0	25	83	8	62	27	14	4	53	1.60
31165850--31166115	46	6.0	46	86	7	352	21	24	15	38	1.92
31166029--31166104	38	2.0	38	100	0	152	23	26	18	31	1.97
31175480--31175510	16	1.9	16	93	0	53	35	22	0	41	1.54
31175477--31175516	20	2.0	20	85	0	53	37	22	0	40	1.54
31175589--31175633	23	1.9	24	90	4	74	22	24	11	42	1.86
31175702--31175956	55	4.8	53	77	9	236	22	23	16	37	1.94
31175749--31175949	108	1.8	110	85	4	282	22	23	16	36	1.94
31177348--31177518	93	1.8	93	89	2	272	28	26	21	23	1.99
31177343--31177515	46	3.7	46	77	14	176	28	25	21	24	1.99
31177391--31177534	46	3.1	44	74	15	123	29	27	20	23	1.99
31177938--31177997	30	2.0	30	90	0	93	30	25	8	36	1.85
31180082--31180168	44	2.0	44	95	0	156	40	20	9	29	1.84
31184967--31185137	93	1.8	93	93	2	299	29	28	20	22	1.98
31184966--31185134	46	3.7	46	78	12	202	29	27	20	22	1.98
31185557--31185616	30	2.0	30	90	0	93	30	25	8	36	1.85
31189228--31189341	48	2.3	48	81	10	124	28	32	17	21	1.96
31189238--31189341	49	2.1	48	82	8	122	27	29	18	24	1.98
31193356--31193415	29	2.1	29	93	0	102	21	36	30	11	1.89
31199214--31199258	22	2.0	22	83	8	56	48	20	4	26	1.68
31204206--31204231	5	5.2	5	100	0	52	19	0	0	80	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31207534--31207578	21	2.1	21	100	0	90	37	15	8	37	1.79
31209472--31209643	93	1.8	93	91	2	283	28	29	20	21	1.98
31209465--31209640	46	3.8	47	78	12	193	29	28	20	21	1.98
31212011--31212070	14	4.3	14	71	14	52	61	13	15	10	1.56
31212011--31212087	15	5.4	15	75	16	74	59	12	16	10	1.60
31212022--31212096	15	5.2	15	72	15	68	57	14	16	12	1.66
31214992--31215161	93	1.8	91	94	2	304	27	29	21	21	1.99
31214993--31215177	44	4.0	45	74	16	148	28	29	20	22	1.98
31221579--31221707	42	3.0	42	80	7	134	24	19	24	31	1.98
31225218--31225270	15	3.5	15	76	5	54	15	13	11	60	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332