genome.fa.s13.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  160  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52741294--52741464	46	3.7	46	95	0	288	34	9	32	23	1.88
52744517--52744596	34	2.4	34	95	2	144	28	32	3	35	1.75
52748888--52748976	27	3.3	27	87	4	119	17	21	22	38	1.94
52754869--52754946	29	2.7	28	84	11	104	25	15	30	28	1.96
52754899--52755225	173	1.9	174	93	0	566	29	14	24	31	1.94
52761125--52761354	40	5.8	40	90	0	343	23	22	28	25	1.99
52761566--52761674	57	1.9	57	86	1	155	23	18	28	29	1.98
52763122--52763301	85	2.1	85	98	0	351	37	8	27	26	1.85
52765487--52766071	47	12.1	47	84	6	729	30	12	29	26	1.93
52765487--52766071	98	6.0	96	87	5	779	30	12	29	26	1.93
52765488--52766066	145	4.0	145	91	3	882	30	12	29	26	1.93
52766045--52766135	46	2.0	46	86	0	128	34	9	30	25	1.88
52766280--52766351	37	1.9	37	91	0	117	23	19	29	27	1.98
52777007--52777051	22	2.0	22	100	0	90	33	8	22	35	1.85
52779655--52779802	48	3.1	48	86	0	206	37	7	24	30	1.83
52781352--52781470	40	3.0	40	93	1	195	19	22	31	26	1.98
52781750--52781860	57	1.9	58	88	1	170	23	18	29	28	1.97
52781782--52781878	28	3.4	28	72	9	81	22	17	32	26	1.96
52784763--52784910	48	3.1	48	89	0	224	38	7	24	29	1.83
52793330--52793635	151	2.0	151	96	0	558	33	31	7	28	1.85
52806772--52806837	33	2.0	33	100	0	132	36	15	6	42	1.71
52810467--52810502	18	2.0	18	94	0	63	27	13	38	19	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52812580--52812619	21	1.9	21	84	0	53	30	27	5	37	1.78
52816680--52816802	48	2.6	46	85	5	158	23	28	19	28	1.98
52816586--52816814	46	4.8	48	76	7	175	23	27	19	29	1.98
52817846--52817954	54	2.0	54	100	0	218	38	20	3	37	1.70
52820102--52820227	46	2.8	43	77	14	110	29	17	27	25	1.97
52824817--52824942	46	2.8	44	84	9	164	27	19	27	24	1.99
52826810--52826961	40	3.8	41	89	3	211	24	21	28	25	1.99
52826810--52826981	80	2.2	80	84	3	213	23	20	27	27	1.99
52830337--52830523	39	4.7	39	86	7	168	25	22	27	24	2.00
52830337--52830560	79	2.8	79	81	12	253	25	22	26	25	2.00
52830337--52830560	40	5.7	40	86	6	262	25	22	26	25	2.00
52830344--52830593	79	3.2	77	78	14	233	27	21	26	24	1.99
52838243--52838465	39	5.6	39	86	6	249	25	22	26	25	2.00
52838243--52838465	79	2.8	79	82	11	276	25	22	26	25	2.00
52838243--52838465	118	1.9	119	82	10	287	25	22	26	25	2.00
52838296--52838498	78	2.6	78	82	9	209	27	21	27	24	1.99
52849218--52849333	41	2.7	42	85	5	153	32	25	15	26	1.95
52849199--52849337	43	3.3	43	81	4	174	32	27	15	25	1.95
52849199--52849369	43	4.0	42	79	6	166	33	26	15	25	1.95
52855515--52855553	16	2.4	16	78	0	51	51	23	15	10	1.73
52855765--52855838	29	2.6	29	87	6	98	27	14	29	28	1.95
52858664--52858784	64	1.9	64	94	0	215	23	22	14	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52863077--52863243	40	4.1	41	82	2	196	25	26	23	25	2.00
52863091--52863243	81	1.9	80	86	1	216	24	27	22	24	2.00
52871177--52871438	40	6.6	40	85	3	316	23	26	24	25	2.00
52871177--52871438	117	2.2	121	82	6	311	23	26	24	25	2.00
52876139--52876297	39	4.1	39	90	1	230	23	28	20	27	1.99
52879883--52879970	40	2.2	40	79	2	97	25	28	23	22	1.99
52879906--52880050	40	3.6	40	83	4	175	22	25	25	26	2.00
52899693--52899897	42	4.7	42	72	15	148	31	24	16	27	1.96
52901818--52901868	20	2.5	21	81	12	70	54	3	11	29	1.54
52904121--52904159	21	1.9	20	84	5	51	25	30	33	10	1.89
52904279--52904334	28	2.0	28	86	10	78	19	44	19	16	1.87
52905410--52905575	48	3.5	48	81	4	194	25	28	16	28	1.97
52905309--52905481	93	1.9	94	85	4	244	26	29	18	25	1.98
52905425--52905624	94	2.1	94	84	3	251	23	28	18	30	1.97
52905316--52905624	46	6.6	46	71	11	207	25	28	17	27	1.98
52914714--52914808	42	2.3	42	86	0	127	32	25	12	29	1.93
52917633--52917785	43	3.6	42	80	11	150	30	25	19	24	1.98
52930350--52930503	44	3.5	43	77	11	159	24	13	23	38	1.91
52930325--52930509	90	2.0	90	84	5	239	25	12	22	39	1.89
52930307--52930459	46	3.4	46	82	8	190	26	12	24	37	1.91
52930307--52930483	46	3.9	45	76	11	148	25	12	24	37	1.91
52933710--52933868	43	3.7	42	79	10	171	24	19	24	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52944487--52944643	29	5.5	29	89	3	221	33	26	12	28	1.92
52944487--52944643	57	2.7	58	89	3	221	33	26	12	28	1.92
52950059--52950241	39	4.7	39	93	0	303	30	20	26	23	1.98
52958023--52958054	14	2.3	14	100	0	64	6	15	46	31	1.71
52963136--52963167	14	2.3	14	100	0	64	6	15	46	31	1.71
52965087--52965307	40	5.6	39	82	9	234	22	21	28	27	1.99
52965087--52965307	80	2.8	79	86	4	286	22	21	28	27	1.99
52973571--52973791	40	5.6	40	84	4	261	22	22	28	26	1.99
52973571--52973791	80	2.8	80	87	4	288	22	22	28	26	1.99
52975901--52976118	40	5.5	40	81	4	230	23	22	27	25	2.00
52979003--52979083	39	2.1	39	83	0	99	29	20	27	22	1.99
52992988--52993019	16	2.0	16	93	0	55	34	18	0	46	1.49
52993281--52993607	50	6.5	49	75	9	248	29	25	16	28	1.97
52993281--52993512	101	2.3	100	82	5	254	30	25	15	29	1.96
52993222--52993613	151	2.6	151	88	0	588	29	25	17	28	1.97
52993380--52993611	101	2.3	100	85	2	295	28	26	18	27	1.98
52996244--52996410	43	3.9	43	77	9	180	31	23	16	28	1.96
52996244--52996406	86	1.9	85	82	3	202	30	23	17	28	1.97
53000994--53001169	48	3.7	49	87	6	245	27	31	16	24	1.96
53014578--53014707	54	2.4	54	77	2	127	36	17	23	22	1.94
53014669--53014772	53	2.0	53	83	9	133	35	17	25	21	1.95
53017846--53018166	48	6.7	48	83	4	400	25	30	17	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53021415--53021559	40	3.6	40	85	4	184	26	24	25	23	2.00
53027027--53027266	40	6.1	39	79	16	239	22	20	29	26	1.99
53027061--53027187	42	3.0	41	75	20	113	25	18	27	28	1.98
53038721--53038832	40	2.9	38	80	12	131	26	28	19	25	1.99
53038738--53038869	40	3.6	37	81	13	152	25	29	18	26	1.98
53039483--53039881	205	1.9	205	91	8	652	34	27	10	26	1.90
53046754--53046977	79	2.8	77	81	11	256	25	26	22	25	2.00
53046754--53046977	40	5.7	39	85	9	253	25	26	22	25	2.00
53054385--53054482	27	3.5	28	88	2	126	26	14	28	30	1.95
53054413--53054495	27	3.0	27	87	5	96	30	13	25	31	1.93
53062252--53062349	27	3.5	28	90	2	135	26	13	28	31	1.94
53062280--53062362	27	3.0	27	87	5	96	30	12	25	32	1.92
53062252--53062363	28	4.0	27	83	6	98	28	12	25	33	1.92
53070110--53070207	27	3.5	28	90	2	135	26	13	28	31	1.94
53070138--53070220	27	3.0	27	87	5	96	30	12	25	32	1.92
53070110--53070221	28	4.0	27	83	6	98	28	12	25	33	1.92
53072000--53072108	45	2.4	45	90	0	164	22	17	29	30	1.97
53080023--53080198	45	4.0	45	87	3	239	22	16	28	32	1.95
53080022--53080280	45	6.0	43	76	10	222	23	16	29	30	1.96
53080022--53080243	88	2.5	88	84	4	281	22	16	28	31	1.96
53080659--53080693	17	2.1	17	100	0	70	37	5	22	34	1.78
53083058--53083129	33	2.2	33	95	2	128	36	20	18	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53083791--53083918	50	2.5	51	87	6	181	32	26	16	25	1.96
53087986--53088026	22	1.9	21	85	5	55	9	39	26	24	1.86
53089488--53089551	34	1.9	33	90	3	101	20	23	26	29	1.99
53091316--53091360	20	2.2	20	84	0	54	28	51	6	13	1.66
53097414--53097486	34	2.1	34	89	0	110	23	24	23	28	1.99
53104669--53104809	40	3.5	40	94	0	237	31	29	17	21	1.97
53108688--53108773	40	2.2	39	87	2	118	24	16	26	32	1.96
53109949--53110060	54	2.1	54	86	0	152	32	21	7	39	1.80
53109974--53110104	27	4.9	27	88	0	181	29	19	7	44	1.78
53110009--53110132	54	2.3	54	80	0	149	31	18	8	41	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332