genome.fa.s13.2.7.7.80.10.50.1000.191.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  191  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63624694--63624758	27	2.4	26	80	10	76	20	21	20	38	1.94
63629369--63629489	39	3.1	39	95	0	215	23	31	23	20	1.98
63636079--63636193	37	3.0	38	91	5	187	24	29	24	21	1.99
63636086--63636195	39	2.9	39	94	2	188	23	29	24	22	1.99
63640691--63640756	34	1.9	34	96	0	123	30	30	12	27	1.92
63640866--63640934	27	2.6	27	79	4	68	23	23	23	30	1.99
63640883--63640942	27	2.2	27	84	0	75	20	20	23	36	1.95
63640927--63641026	27	3.7	27	74	2	85	31	6	24	39	1.79
63642331--63642443	43	2.7	43	82	6	124	27	16	25	30	1.97
63650347--63650398	27	2.0	26	84	3	68	34	21	26	17	1.95
63651058--63651112	27	2.0	27	92	0	92	21	18	20	40	1.92
63651094--63651191	27	3.6	27	74	8	83	28	9	26	35	1.87
63657559--63657763	27	7.6	27	86	3	259	30	27	15	26	1.96
63665594--63665798	27	7.6	27	86	3	259	30	27	15	26	1.96
63672302--63672533	49	4.7	49	80	5	268	29	26	18	25	1.98
63672302--63672533	100	2.3	99	83	4	288	29	26	18	25	1.98
63681203--63681417	44	4.7	44	80	8	207	24	19	31	25	1.98
63681155--63681452	49	6.3	48	75	12	217	26	18	30	24	1.98
63683469--63683691	40	5.7	40	85	7	287	24	22	27	25	2.00
63714708--63714741	4	8.8	4	93	6	61	23	0	0	76	0.79
63715424--63715483	30	2.0	30	96	0	111	36	23	8	31	1.84
63715526--63715568	16	2.7	16	79	13	52	51	13	20	13	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63715781--63715870	29	3.1	28	87	7	128	28	14	27	28	1.95
63716149--63716199	27	1.9	27	84	4	68	52	21	11	13	1.72
63719596--63719690	29	3.3	28	85	7	120	28	12	28	30	1.93
63722209--63722392	67	2.8	64	77	8	194	29	17	29	22	1.97
63726341--63726513	46	3.7	46	76	10	181	23	20	26	30	1.99
63726338--63726508	93	1.8	93	89	0	270	22	21	26	29	1.99
63745383--63745446	31	2.1	31	90	0	101	25	23	15	35	1.94
63745632--63745799	24	7.0	24	87	7	234	29	20	19	30	1.97
63745856--63745932	9	7.9	9	71	21	57	36	22	7	33	1.83
63745852--63745934	20	4.2	20	90	6	141	33	20	10	34	1.87
63745971--63746018	25	1.9	25	91	0	78	25	14	25	35	1.94
63746438--63746465	8	3.5	8	100	0	56	14	21	21	42	1.88
63753492--63753555	31	2.1	31	88	5	94	23	25	15	35	1.94
63753741--63753905	23	7.0	24	86	11	225	28	21	19	30	1.98
63753755--63753905	47	3.2	47	90	7	227	28	21	18	31	1.97
63753962--63754038	9	7.9	9	75	16	73	36	20	7	35	1.82
63753957--63754040	20	4.2	20	93	0	150	34	19	10	35	1.86
63754077--63754124	25	1.9	25	86	0	69	25	16	25	33	1.96
63764295--63764445	28	5.4	28	92	1	223	25	11	28	33	1.92
63767253--63767304	18	2.9	18	88	0	59	21	23	9	46	1.80
63773537--63773566	14	2.1	14	100	0	60	26	23	20	30	1.98
63779653--63779821	51	3.3	49	79	6	185	31	32	4	30	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63783108--63783221	43	2.7	43	75	5	106	33	24	15	26	1.95
63787466--63787636	93	1.8	93	93	0	297	28	29	21	21	1.98
63787458--63787633	46	3.8	46	79	12	207	28	28	21	21	1.98
63792263--63792312	22	2.3	20	78	18	55	50	26	4	20	1.66
63792765--63792825	18	3.4	18	95	0	113	37	11	19	31	1.87
63793097--63793262	43	3.9	43	77	6	142	31	25	15	27	1.95
63795287--63795401	46	2.5	46	87	7	153	28	19	29	22	1.98
63797865--63798131	50	5.4	50	81	4	245	28	9	20	40	1.84
63797899--63798111	99	2.2	99	82	6	245	29	7	20	43	1.78
63797982--63798059	24	3.2	24	67	16	70	34	3	17	43	1.68
63798726--63798760	17	2.1	17	94	0	61	48	8	8	34	1.64
63798730--63798759	15	2.0	15	93	0	51	46	10	6	36	1.64
63800832--63801051	40	5.7	39	84	10	256	24	22	27	25	2.00
63800832--63801051	74	2.8	79	81	10	256	24	22	27	25	2.00
63800832--63801051	114	1.9	115	83	7	286	24	22	27	25	2.00
63808692--63808872	39	4.6	39	84	11	153	25	22	27	25	2.00
63808688--63808909	77	2.8	79	80	14	244	25	22	26	25	2.00
63808688--63808909	40	5.7	40	84	8	253	25	22	26	25	2.00
63808741--63808942	76	2.6	76	80	9	187	26	21	26	25	1.99
63813165--63813196	11	2.9	11	100	0	64	46	9	28	15	1.77
63816622--63816863	50	4.9	50	81	3	195	30	8	21	40	1.82
63816721--63816882	50	3.2	50	88	3	220	27	8	21	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63817973--63818038	33	2.0	33	93	0	114	30	3	25	40	1.71
63819558--63819763	40	5.2	40	94	1	319	27	27	22	22	1.99
63821138--63821163	13	2.0	13	100	0	52	61	7	0	30	1.24
63821594--63821642	21	2.3	21	82	6	64	14	32	26	26	1.94
63827316--63827375	27	2.2	27	81	0	66	43	16	8	31	1.78
63827358--63827446	27	3.3	25	75	16	72	30	20	6	42	1.77
63827478--63827576	27	3.7	27	75	12	71	42	19	8	30	1.80
63827683--63827734	27	1.9	27	84	7	70	40	23	19	17	1.91
63828567--63828636	25	2.8	24	86	4	86	27	27	21	24	1.99
63828592--63828647	25	2.2	25	78	6	60	35	19	19	25	1.95
63828783--63828874	42	2.2	42	90	0	139	30	13	21	34	1.91
63828898--63829043	31	4.7	31	93	0	240	30	17	23	27	1.97
63833916--63834088	46	3.7	46	79	10	208	21	20	27	29	1.98
63833913--63834083	93	1.8	93	93	0	297	21	21	28	28	1.98
63834313--63834350	19	2.0	20	85	15	53	36	0	23	39	1.55
63845788--63845818	16	1.9	16	93	0	53	22	25	12	38	1.90
63861845--63862069	49	4.5	49	81	4	263	28	26	18	25	1.98
63861845--63862076	101	2.3	98	83	5	279	28	26	18	25	1.98
63865027--63865075	25	1.9	26	83	4	64	38	22	14	24	1.91
63865115--63865172	10	5.6	10	80	11	64	34	10	18	36	1.85
63865115--63865188	21	3.5	20	83	5	85	33	12	17	36	1.87
63865115--63865172	5	11.2	5	74	7	53	34	10	18	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63868441--63868475	13	2.8	12	87	8	52	54	0	40	5	1.24
63872787--63872901	29	4.0	29	73	1	97	25	30	14	29	1.95
63878069--63878231	43	3.7	46	76	12	141	34	27	17	20	1.95
63886215--63886298	24	3.4	25	85	6	118	27	17	23	30	1.97
63886215--63886292	25	3.2	25	85	7	106	26	19	23	30	1.98
63888224--63888295	33	2.2	33	82	2	81	30	26	19	23	1.98
63888262--63888315	28	1.9	28	84	0	72	31	24	24	20	1.98
63888258--63888323	28	2.4	27	77	7	69	31	22	22	22	1.98
63888484--63888544	27	2.3	27	80	11	79	31	21	24	22	1.98
63888693--63888827	27	5.0	27	78	8	100	28	22	17	31	1.96
63888694--63888822	54	2.4	54	77	12	122	29	22	14	33	1.94
63892955--63893024	27	2.6	27	82	8	88	32	18	25	22	1.97
63892972--63893038	27	2.5	26	79	9	73	34	22	19	23	1.97
63893165--63893229	27	2.4	27	80	16	82	23	21	20	35	1.96
63898573--63898684	52	2.2	52	81	3	136	21	16	30	31	1.96
63909070--63909178	52	2.1	52	84	3	139	25	17	26	30	1.97
63917451--63917524	34	2.2	34	92	4	123	28	22	22	25	1.99
63927928--63928057	43	3.0	43	80	6	156	23	20	26	29	1.99
63929027--63929054	13	2.2	13	100	0	56	10	14	28	46	1.78
63931747--63931885	51	2.7	51	82	6	149	27	28	17	27	1.97
63931776--63932026	51	4.9	51	78	4	168	31	25	15	26	1.96
63931896--63932024	52	2.5	50	82	2	150	33	24	15	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63937581--63937681	44	2.3	44	83	11	129	27	16	19	35	1.94
63946575--63946712	40	3.3	40	81	9	136	28	13	25	33	1.93
63947779--63947810	11	2.9	11	100	0	64	28	9	34	28	1.88
63949280--63949429	27	5.6	27	82	3	167	27	14	28	30	1.95
63949281--63949429	81	1.8	81	86	2	219	26	14	28	30	1.95
63957403--63957551	27	5.5	27	83	3	165	26	14	28	30	1.95
63957402--63957551	81	1.9	81	87	2	221	26	14	28	30	1.95
63962627--63962798	46	3.7	46	79	13	208	20	20	29	29	1.98
63962620--63962791	93	1.8	93	94	0	308	21	21	29	27	1.99
63970283--63970401	27	4.4	27	81	0	103	37	19	18	24	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332