genome.fa.s13.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  136  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44413479--44413621	46	3.1	45	83	6	128	29	28	21	20	1.98
44415477--44415576	29	3.4	30	80	5	123	19	22	15	44	1.87
44415583--44415696	30	3.8	30	85	0	138	21	21	17	39	1.92
44415583--44415696	60	1.9	60	88	0	174	21	21	17	39	1.92
44430642--44430757	57	2.0	57	93	0	196	35	18	18	28	1.94
44445956--44446168	40	5.5	40	88	5	287	25	21	28	24	1.99
44445952--44446135	40	4.7	40	89	4	288	25	21	28	25	1.99
44445952--44446168	79	2.8	78	82	10	282	26	21	27	24	1.99
44454042--44454257	40	5.5	40	90	4	307	25	22	27	24	2.00
44458257--44458388	62	2.1	62	95	0	237	23	9	19	47	1.78
44465755--44465890	65	2.1	65	78	13	147	24	25	23	26	2.00
44466443--44466490	24	2.0	24	95	0	87	31	20	6	41	1.77
44475513--44475598	44	2.0	44	97	0	163	38	10	15	36	1.81
44482548--44482596	21	2.3	21	85	0	62	12	28	34	24	1.91
44488489--44488568	29	2.8	29	84	3	108	27	17	27	27	1.98
44489633--44489666	18	1.9	18	88	5	52	41	20	8	29	1.82
44498586--44498643	25	2.3	25	82	11	66	65	1	10	22	1.32
44505318--44505428	56	2.0	56	84	10	147	31	25	15	27	1.95
44508868--44508941	36	2.1	36	97	0	139	36	10	17	35	1.85
44531255--44531297	22	1.9	22	85	4	59	20	4	53	20	1.63
44531321--44531414	34	2.8	33	80	1	98	27	18	26	27	1.98
44532353--44532473	55	2.2	55	83	0	161	25	34	19	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44533338--44533502	46	3.6	44	82	8	197	26	31	16	26	1.96
44537779--44538024	49	5.0	49	81	3	224	24	17	29	28	1.98
44542865--44543110	49	4.9	50	79	4	264	28	19	23	28	1.98
44542868--44543097	100	2.3	98	81	3	264	28	19	23	29	1.98
44552431--44552547	57	2.0	58	83	8	150	45	4	21	29	1.71
44555833--44556203	48	7.7	47	78	8	260	25	19	29	25	1.98
44555936--44556206	96	2.8	96	83	1	346	24	19	29	25	1.98
44555824--44556203	144	2.6	142	82	4	440	25	18	29	25	1.98
44575859--44575947	25	3.6	24	71	4	63	31	19	28	21	1.97
44579155--44579703	47	11.6	47	93	1	882	29	29	8	32	1.87
44579155--44579703	143	3.9	143	93	2	935	29	29	8	32	1.87
44583623--44583800	40	4.5	40	93	2	288	23	23	29	24	1.99
44591810--44591916	28	3.8	28	91	0	151	35	9	25	29	1.87
44593897--44594104	28	7.5	28	71	9	174	16	18	35	29	1.93
44593925--44594134	28	7.4	29	69	10	157	17	17	36	29	1.93
44593895--44594134	57	4.2	57	90	5	380	17	17	35	29	1.93
44599059--44599164	28	3.8	28	89	2	151	34	10	24	30	1.89
44612604--44612795	40	4.8	40	78	6	185	25	27	21	25	1.99
44628924--44628949	13	2.0	13	100	0	52	30	38	7	23	1.83
44636605--44636655	22	2.3	22	86	6	68	41	29	11	17	1.85
44636624--44636715	38	2.4	38	91	7	159	38	30	14	17	1.89
44639298--44639329	16	2.0	16	93	0	55	34	18	0	46	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44639459--44639613	78	2.0	78	97	0	292	28	23	18	30	1.97
44639611--44640004	101	3.9	101	80	4	357	31	25	17	25	1.97
44639611--44640005	151	2.6	151	88	0	594	31	25	17	25	1.97
44639611--44640005	50	7.9	50	80	3	436	31	25	17	25	1.97
44647215--44647494	48	5.9	48	75	8	239	27	18	30	23	1.98
44647225--44647494	142	1.9	142	85	1	371	28	19	30	22	1.98
44656256--44656294	17	2.3	17	90	0	60	30	25	7	35	1.84
44673241--44673352	45	2.6	45	83	7	133	23	28	24	24	2.00
44673381--44673650	38	7.1	38	91	1	425	33	25	21	19	1.97
44679530--44679800	38	7.1	38	90	0	398	30	23	23	21	1.99
44680074--44680167	43	2.2	44	88	1	145	26	29	18	25	1.98
44686788--44686815	8	3.5	8	100	0	56	10	10	10	67	1.42
44688533--44688642	38	2.9	38	82	2	123	31	30	18	20	1.96
44690774--44690841	29	2.4	29	87	2	93	27	14	26	30	1.95
44694507--44694685	27	6.6	27	82	5	198	27	15	27	29	1.96
44694507--44694685	55	3.3	55	82	4	193	27	15	27	29	1.96
44694504--44694685	82	2.2	82	82	3	224	27	15	27	29	1.96
44702489--44702666	27	6.6	27	83	3	205	26	15	28	29	1.96
44702490--44702645	82	1.9	81	88	3	233	26	15	28	29	1.96
44702486--44702666	82	2.2	81	83	2	229	27	15	27	29	1.96
44704585--44704698	29	4.0	29	72	10	90	25	29	14	30	1.94
44704920--44704962	8	5.4	8	80	0	50	11	23	16	48	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44704919--44704962	16	2.8	16	96	0	79	13	22	15	47	1.81
44706205--44706234	7	4.3	7	100	0	60	46	40	13	0	1.43
44709891--44710045	42	3.7	42	77	0	166	28	14	25	30	1.95
44714888--44715000	38	3.0	38	86	0	154	29	16	29	24	1.97
44714888--44715030	38	3.8	38	83	1	117	27	15	28	27	1.96
44715058--44715248	40	4.8	40	95	0	319	21	24	27	25	2.00
44715417--44715468	25	2.1	25	89	7	79	30	13	28	26	1.94
44715484--44715580	28	3.5	28	72	10	99	18	18	34	28	1.95
44715456--44715580	56	2.2	56	92	0	205	19	18	32	30	1.95
44718484--44718562	25	3.3	25	61	10	65	36	5	25	32	1.78
44718459--44719035	47	12.3	47	90	0	902	35	8	27	28	1.86
44718650--44718725	22	3.3	22	66	16	64	32	10	30	26	1.90
44718766--44718843	25	3.2	25	64	10	72	35	5	26	32	1.79
44722078--44722119	21	2.0	21	86	4	59	57	11	7	23	1.59
44723243--44723291	6	8.2	6	95	0	80	44	0	55	0	0.99
44737688--44737713	13	2.0	13	100	0	52	38	23	0	38	1.55
44740477--44740769	145	2.0	145	95	0	532	37	19	4	38	1.73
44748244--44748351	40	2.7	40	88	4	128	28	21	24	25	1.99
44748261--44748657	153	2.6	153	84	0	506	30	20	20	27	1.98
44748261--44748670	40	10.6	40	68	11	208	30	20	21	27	1.98
44748550--44748699	40	3.7	40	82	3	131	28	21	22	28	1.99
44748550--44748699	81	1.9	80	84	4	196	28	21	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44748734--44748792	29	2.0	29	100	0	118	40	3	6	49	1.46
44748963--44749016	14	3.9	14	85	4	74	25	1	25	46	1.63
44748964--44749037	28	2.6	29	85	8	98	28	2	22	45	1.66
44748962--44749060	28	3.8	27	70	18	84	28	2	24	45	1.64
44749495--44749554	21	2.9	21	82	2	68	18	3	35	43	1.67
44754452--44754501	19	2.5	20	78	18	59	58	2	2	38	1.21
44754454--44754501	20	2.4	21	82	10	64	58	2	2	37	1.22
44754507--44754653	43	3.4	43	92	1	242	23	17	28	29	1.97
44766384--44766551	40	4.2	40	83	4	106	25	27	23	23	2.00
44766407--44766551	40	3.6	40	85	4	193	23	26	24	25	2.00
44768803--44768860	30	1.9	31	82	10	75	63	0	18	17	1.31
44768937--44768994	28	2.1	28	96	0	107	27	12	24	36	1.91
44770004--44770049	24	2.0	24	91	4	76	13	23	26	36	1.91
44771104--44771164	22	2.8	21	85	9	70	37	18	22	21	1.94
44771710--44771918	27	7.8	26	79	6	170	30	10	19	40	1.84
44771765--44771918	27	5.8	26	87	3	218	30	8	20	40	1.82
44775931--44776032	27	3.8	26	72	5	87	39	19	19	21	1.93
44776017--44776086	22	3.2	23	82	10	92	37	20	21	21	1.95
44776431--44776645	27	8.0	27	76	9	127	32	12	19	36	1.88
44776516--44776778	54	4.9	53	79	6	278	30	7	21	40	1.82
44776492--44776783	108	2.7	108	84	3	358	30	8	20	40	1.82
44776490--44776783	27	10.9	27	79	6	238	30	8	21	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44776998--44777050	19	2.9	18	76	18	56	26	39	22	11	1.88
44787015--44787255	56	4.3	56	83	4	290	31	24	17	26	1.97
44794744--44794817	23	3.3	23	62	11	64	45	21	14	17	1.84
44794706--44794835	43	3.0	43	95	1	224	48	20	16	14	1.81
44795882--44795927	24	2.0	23	86	4	65	15	23	26	34	1.94
44796180--44796234	23	2.4	23	87	6	76	47	5	16	30	1.69
44801727--44802026	49	6.3	47	70	12	209	24	29	18	28	1.98
44801727--44801976	93	2.6	93	81	6	263	25	28	18	27	1.98
44810060--44810326	49	5.6	48	72	14	176	23	28	19	28	1.98
44814802--44814977	46	3.8	46	72	11	162	32	27	17	22	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332