genome.fa.s13.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  119  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38404509--38404704	27	7.3	27	82	0	203	37	18	18	25	1.93
38404903--38404985	27	3.1	26	83	8	87	19	21	20	38	1.93
38405073--38405131	22	2.7	22	81	0	64	20	25	22	32	1.98
38405296--38405369	27	2.8	27	85	6	89	17	24	21	36	1.95
38405512--38405673	6	26.8	6	76	15	156	19	17	14	48	1.80
38405487--38405673	85	2.2	85	95	0	329	20	17	13	48	1.81
38405487--38405694	30	7.1	30	80	11	207	20	17	13	48	1.81
38408684--38408748	31	2.1	30	86	8	87	23	18	20	38	1.93
38410285--38410503	40	5.5	40	92	2	345	25	28	23	22	1.99
38418789--38419025	40	5.9	40	87	3	291	26	26	21	26	1.99
38418789--38419025	119	2.0	120	83	4	300	26	26	21	26	1.99
38420152--38420383	56	4.1	56	98	0	437	21	23	9	44	1.81
38423258--38423404	67	2.2	67	81	8	165	32	17	28	21	1.96
38423282--38423465	67	2.8	64	76	8	185	29	16	29	23	1.96
38425385--38425688	47	6.4	47	91	1	437	27	29	8	34	1.86
38434449--38434524	24	2.9	26	86	11	111	23	23	27	25	2.00
38434505--38434615	40	2.8	39	83	5	125	26	21	27	24	1.99
38442272--38442413	40	3.9	40	73	20	130	22	21	28	28	1.99
38442303--38442359	29	2.0	29	100	0	114	21	21	28	29	1.98
38450429--38450567	40	3.5	40	90	3	203	23	28	23	23	1.99
38454725--38454848	48	2.6	48	81	7	144	37	28	12	21	1.91
38460653--38460897	55	4.6	54	78	8	229	35	17	24	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38461104--38461134	16	1.9	16	93	0	53	41	0	22	35	1.54
38468225--38468481	55	4.8	54	75	11	219	36	16	24	21	1.94
38468670--38468700	16	1.9	16	93	0	53	41	0	22	35	1.54
38480368--38480437	27	2.6	27	95	2	113	31	28	12	27	1.93
38480368--38480465	28	3.5	28	90	2	135	31	28	13	26	1.94
38483110--38483227	51	2.3	52	86	5	170	42	7	21	28	1.80
38483210--38483239	6	5.0	6	100	0	60	66	0	16	16	1.25
38485573--38485608	17	2.1	17	100	0	72	50	22	11	16	1.77
38488680--38488778	38	2.6	38	86	0	135	48	11	5	35	1.61
38490208--38490286	31	2.5	31	93	4	133	27	24	18	29	1.98
38490492--38490653	26	6.3	26	86	2	206	29	23	19	28	1.98
38490492--38490653	78	2.1	74	87	7	227	29	23	19	28	1.98
38491457--38491543	27	3.2	27	86	3	113	19	25	19	35	1.95
38491601--38492053	27	16.7	27	75	8	224	32	8	19	39	1.82
38491659--38491924	81	3.3	80	85	6	324	30	8	19	41	1.81
38491582--38492053	54	8.7	54	75	6	290	32	8	19	39	1.82
38494496--38494617	46	2.7	46	80	12	146	29	18	29	22	1.97
38497242--38497386	27	5.4	27	83	4	177	26	22	17	33	1.96
38506347--38506518	47	3.7	46	87	2	236	28	31	7	32	1.85
38506501--38506536	18	2.0	18	100	0	72	33	33	0	33	1.58
38506455--38506585	67	2.0	64	94	4	226	31	29	5	33	1.80
38506361--38506679	160	2.0	159	91	1	514	29	31	7	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38506519--38506757	47	5.0	47	92	3	388	28	28	8	33	1.86
38516426--38516487	26	2.5	25	90	10	101	27	27	25	19	1.99
38518328--38518362	17	1.9	17	88	11	52	60	8	8	22	1.54
38518623--38518661	6	6.2	6	82	11	51	61	5	2	30	1.31
38518623--38518661	19	2.1	19	90	9	62	61	5	2	30	1.31
38518623--38518661	13	3.1	12	85	7	51	61	5	2	30	1.31
38522224--38522343	42	3.0	41	85	7	156	28	26	20	25	1.99
38522220--38522352	40	3.3	40	81	13	148	27	27	19	25	1.99
38529082--38529302	80	2.8	80	80	7	202	27	27	20	24	1.99
38529122--38529302	80	2.3	80	83	9	219	27	27	20	23	1.99
38529119--38529302	40	4.6	40	81	7	196	28	27	20	23	1.99
38531863--38532047	39	4.7	39	91	0	289	30	28	20	20	1.98
38536821--38536928	55	2.0	55	85	7	148	36	17	23	23	1.95
38545054--38545152	10	10.6	9	69	19	60	28	4	4	63	1.30
38545021--38545097	20	4.0	20	68	21	56	27	7	0	64	1.20
38546283--38546317	15	2.2	16	90	5	54	25	0	2	71	1.00
38548865--38548931	27	2.5	27	85	0	71	32	16	22	28	1.95
38548930--38549072	27	5.3	26	79	7	117	45	18	7	27	1.77
38548984--38549098	27	4.3	27	78	6	83	47	17	7	26	1.75
38549009--38549128	27	4.4	27	77	10	102	46	17	8	27	1.76
38549010--38549128	55	2.2	54	80	7	125	47	17	7	27	1.75
38549082--38549134	27	2.0	27	92	0	88	41	13	15	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38549394--38549516	41	3.0	40	79	4	147	25	21	25	27	2.00
38552740--38552789	26	2.0	25	92	4	82	28	16	26	30	1.96
38552796--38553099	27	11.3	27	80	5	256	39	19	9	30	1.84
38552888--38553195	27	11.4	27	78	7	191	38	19	10	31	1.85
38553460--38553582	41	3.0	41	90	0	183	23	21	27	26	1.99
38556042--38556640	47	12.6	47	94	1	1009	32	8	29	29	1.87
38556759--38556903	37	3.9	37	94	0	245	22	20	31	25	1.98
38558006--38558057	22	2.4	22	86	0	77	13	17	25	44	1.85
38558997--38559619	325	1.9	324	84	3	824	31	15	22	30	1.95
38566371--38566408	12	3.0	13	84	7	60	73	0	2	23	0.95
38566488--38566531	19	2.3	19	88	7	63	56	0	2	40	1.11
38566835--38566875	18	2.3	18	100	0	82	19	26	31	21	1.97
38567439--38567940	104	4.9	101	82	12	550	30	1	14	53	1.49
38567439--38567940	207	2.4	207	84	11	622	30	1	14	53	1.49
38572957--38573044	33	2.7	33	80	7	90	19	43	9	28	1.81
38573212--38573398	75	2.5	74	86	6	247	27	6	12	53	1.62
38582834--38582876	22	2.0	22	90	0	68	34	2	16	46	1.60
38588413--38588492	29	2.7	29	84	7	99	28	32	15	23	1.95
38590946--38590988	22	2.0	22	90	0	68	34	2	16	46	1.60
38593924--38594050	64	2.0	64	82	0	155	52	14	6	25	1.65
38597768--38597801	18	1.9	18	94	5	61	11	23	44	20	1.84
38599824--38599856	16	2.1	16	94	0	57	48	30	6	15	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38601050--38601086	19	2.0	18	89	5	56	27	16	37	18	1.92
38601167--38601277	29	3.9	29	76	3	109	28	17	29	24	1.97
38604486--38604579	42	2.2	42	88	7	138	37	14	15	31	1.89
38609377--38609411	17	2.1	17	88	0	52	42	2	2	51	1.31
38610693--38610766	28	2.6	28	82	0	85	31	9	28	31	1.89
38613412--38613505	37	2.6	36	88	5	152	26	17	29	26	1.97
38613614--38613720	42	2.5	42	76	0	115	23	14	28	32	1.95
38617487--38617589	40	2.4	43	84	9	131	22	15	29	33	1.95
38617573--38617638	27	2.4	28	84	5	89	27	10	28	33	1.90
38619311--38619378	32	2.2	31	89	2	100	19	32	32	16	1.93
38623248--38623298	25	2.0	25	88	0	75	27	5	19	47	1.73
38626491--38626601	29	3.9	29	74	5	91	27	27	17	27	1.97
38626521--38626614	29	3.3	29	79	7	102	27	27	17	27	1.97
38626825--38626875	24	2.1	24	92	0	84	11	19	17	50	1.76
38626831--38626869	16	2.4	16	86	0	60	12	23	17	46	1.83
38627450--38627531	35	2.4	34	85	4	112	57	2	26	13	1.49
38628146--38628177	16	2.0	16	100	0	64	12	12	31	43	1.80
38646081--38646154	29	2.6	29	86	4	96	27	16	31	25	1.96
38650248--38650440	41	4.8	41	83	3	230	24	15	26	32	1.95
38650248--38650440	81	2.4	82	85	1	255	24	15	26	32	1.95
38653215--38653340	28	4.5	28	96	1	227	33	29	11	25	1.92
38659060--38659237	27	6.6	27	82	6	198	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38659061--38659216	82	1.9	81	87	6	226	26	15	28	29	1.96
38659057--38659237	82	2.2	81	82	4	222	26	15	28	29	1.96
38660737--38660888	28	5.4	28	75	6	119	27	32	13	26	1.93
38660737--38660876	29	4.9	28	80	5	147	26	35	14	24	1.93
38660766--38660876	57	1.9	57	85	1	150	24	36	14	25	1.93
38661105--38661141	16	2.4	16	90	4	58	8	16	21	54	1.68
38665236--38665287	23	2.3	22	75	21	54	9	23	1	65	1.32
38668986--38669064	37	2.1	37	90	0	122	25	31	18	24	1.98
38669183--38669503	47	6.8	48	90	3	465	29	30	8	31	1.87
38669183--38669503	96	3.4	96	93	1	513	29	30	8	31	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332