genome.fa.s13.2.7.7.80.10.50.1000.186.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  186  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61851587--61851698	49	2.3	48	83	7	129	25	31	16	25	1.97
61853949--61853979	16	1.9	16	100	0	62	19	35	6	38	1.77
61856279--61856403	50	2.5	50	85	2	171	31	26	16	25	1.97
61862641--61862796	43	3.7	43	77	8	165	34	28	14	21	1.93
61869254--61869477	40	5.6	40	83	6	292	24	22	26	25	2.00
61869258--61869477	83	2.7	79	86	5	282	24	23	27	25	2.00
61870735--61870910	46	3.8	46	78	10	178	21	19	28	30	1.97
61870732--61870903	93	1.8	93	88	0	263	21	19	29	29	1.98
61874829--61874939	54	2.1	54	96	0	204	37	21	8	32	1.83
61875560--61875591	14	2.3	14	100	0	64	6	15	46	31	1.71
61882193--61882347	42	3.6	42	80	5	159	28	25	15	30	1.96
61884008--61884066	29	2.0	29	86	0	82	30	27	8	33	1.86
61884093--61884163	29	2.4	29	95	0	124	18	28	14	39	1.89
61884151--61884227	29	2.7	29	83	4	93	27	23	10	38	1.87
61888953--61889121	76	2.2	77	90	4	259	29	27	20	21	1.98
61888923--61889121	40	5.1	40	86	6	284	28	27	21	22	1.99
61890122--61890168	24	2.0	24	83	8	60	44	23	6	25	1.77
61897069--61897271	40	5.1	40	90	1	311	28	26	21	23	1.99
61898691--61898718	13	2.2	13	100	0	56	57	14	0	28	1.38
61899932--61900053	43	2.9	41	73	18	115	28	24	13	32	1.94
61902797--61903065	46	5.8	46	78	11	280	22	20	27	29	1.98
61902793--61903057	93	2.8	93	94	0	449	22	20	27	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61911458--61911482	10	2.5	10	100	0	50	20	0	8	72	1.10
61918188--61918247	27	2.3	26	82	2	66	23	20	20	36	1.95
61919032--61919117	45	1.9	45	87	0	127	32	1	26	39	1.64
61922216--61922437	40	5.6	40	84	3	279	24	26	22	27	2.00
61940428--61940462	14	2.4	15	90	4	54	22	2	0	74	0.95
61940531--61940617	30	3.2	30	67	24	91	42	16	26	14	1.87
61942659--61942693	13	2.6	14	90	4	54	34	5	14	45	1.68
61947484--61947658	46	3.8	46	78	13	196	29	30	20	20	1.97
61947491--61947662	93	1.8	93	93	0	299	28	30	20	20	1.98
61955003--61955176	46	3.8	46	78	14	196	28	30	20	20	1.98
61955010--61955180	92	1.8	93	93	1	299	28	30	21	20	1.98
61957783--61958038	47	5.5	46	72	10	189	28	20	28	23	1.99
61957776--61958042	94	2.9	92	84	6	351	28	20	28	23	1.99
61972048--61972147	51	2.0	51	81	0	119	34	25	15	26	1.95
61972117--61972243	43	3.0	43	77	6	123	33	25	14	25	1.95
61974913--61975017	53	2.0	53	84	0	138	19	25	19	36	1.95
61976969--61977179	46	4.5	47	77	11	193	29	19	26	24	1.98
61976969--61977179	93	2.3	94	85	4	275	29	19	26	24	1.98
61985002--61985109	32	3.4	32	86	0	153	27	29	18	24	1.98
61992216--61992251	18	2.0	18	94	0	63	41	5	22	30	1.76
61994114--61994289	46	3.8	46	79	7	194	21	20	28	29	1.98
61994110--61994281	93	1.8	93	89	0	272	21	20	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61997153--61997573	212	2.0	212	96	0	770	34	23	18	24	1.96
62002170--62002269	51	2.0	51	85	0	137	33	27	17	23	1.96
62002228--62002313	43	2.0	43	86	0	118	31	30	17	20	1.96
62009463--62009596	43	2.9	45	77	10	130	22	16	29	32	1.96
62009507--62009606	51	2.0	51	85	0	137	23	17	27	33	1.96
62014174--62014592	210	2.0	212	95	0	752	24	18	23	34	1.96
62017599--62017781	40	4.7	40	82	8	216	25	27	21	24	1.99
62017599--62017779	78	2.3	80	83	7	228	25	28	21	24	1.99
62025470--62025651	78	2.3	81	83	6	221	24	28	21	25	1.99
62025451--62025653	40	5.1	40	81	7	227	24	27	22	25	2.00
62031023--62031052	15	2.0	15	93	0	51	70	0	0	30	0.88
62046523--62046782	40	6.5	40	81	5	287	24	27	22	25	2.00
62047088--62047166	29	2.7	29	86	5	106	27	32	15	24	1.95
62047148--62047336	43	4.4	43	95	0	342	27	33	14	24	1.94
62049417--62049641	40	5.7	40	86	5	194	25	21	27	25	2.00
62049417--62049641	79	2.8	80	81	10	255	25	21	27	25	2.00
62049417--62049641	119	1.9	120	82	8	289	25	21	27	25	2.00
62049470--62049674	79	2.6	79	81	7	195	27	20	27	25	1.99
62052547--62053028	47	10.1	47	92	3	777	29	30	8	32	1.87
62052547--62053028	96	5.0	96	95	1	844	29	30	8	32	1.87
62052547--62053028	143	3.4	144	92	3	805	29	30	8	32	1.87
62057422--62057646	40	5.6	40	82	4	265	23	27	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62059304--62059475	93	1.8	93	96	0	317	27	29	21	21	1.99
62059297--62059472	46	3.8	46	78	12	207	28	28	21	21	1.98
62067611--62068031	46	8.9	46	79	16	400	31	28	6	32	1.84
62067611--62068031	95	4.5	93	80	15	440	31	28	6	32	1.84
62067662--62068034	142	2.6	141	81	14	446	31	28	7	33	1.84
62072385--62072502	40	2.9	39	76	16	105	23	27	24	24	2.00
62072354--62072504	41	3.6	39	75	17	110	22	26	25	25	2.00
62079365--62079588	40	5.7	40	86	6	296	24	22	27	25	2.00
62079365--62079588	78	2.8	80	84	8	296	24	22	27	25	2.00
62087311--62087534	40	5.7	40	86	6	296	24	22	27	25	2.00
62087311--62087534	78	2.8	80	84	8	296	24	22	27	25	2.00
62091517--62091668	42	3.6	42	82	3	180	28	24	15	31	1.96
62096806--62096839	6	5.7	6	92	0	59	55	0	26	17	1.42
62096805--62096839	18	1.9	18	100	0	70	57	0	25	17	1.40
62098544--62098691	65	2.2	65	83	3	179	39	16	18	26	1.91
62098544--62098758	68	3.2	65	80	4	187	36	16	20	27	1.93
62103245--62103362	43	2.8	41	78	11	114	27	18	23	30	1.98
62123689--62123826	40	3.5	40	91	3	208	24	21	28	25	1.99
62126977--62127042	34	1.9	34	96	0	123	25	18	9	46	1.78
62136066--62136209	46	3.1	44	70	21	107	29	27	20	22	1.98
62138579--62138641	15	4.1	16	80	12	78	58	12	15	12	1.63
62141547--62141718	93	1.8	93	94	0	308	27	30	21	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62141539--62141714	46	3.8	46	81	10	214	28	29	21	21	1.98
62153184--62153235	19	2.8	20	82	8	65	30	3	0	65	1.10
62155105--62155250	27	5.4	26	78	6	123	27	20	15	36	1.92
62155105--62155250	54	2.7	53	80	8	152	27	20	15	36	1.92
62160400--62160477	37	2.1	36	86	6	104	25	29	19	25	1.98
62160596--62160998	47	8.6	47	92	4	652	29	30	8	31	1.87
62160596--62160998	189	2.2	188	91	4	656	29	30	8	31	1.87
62160596--62160998	140	2.9	140	93	3	666	29	30	8	31	1.87
62160596--62160998	93	4.3	92	91	5	589	29	30	8	31	1.87
62164430--62164624	40	4.9	40	82	3	189	25	27	22	24	2.00
62164930--62165008	29	2.7	29	88	2	113	27	31	15	25	1.95
62164990--62165092	43	2.4	43	98	0	197	26	34	15	23	1.94
62166954--62167032	37	2.1	37	88	4	115	25	30	18	25	1.98
62167226--62167397	46	3.8	41	96	2	193	30	29	9	30	1.88
62167151--62167409	47	5.6	47	93	1	425	28	30	8	32	1.87
62167151--62167409	138	1.9	141	90	2	425	28	30	8	32	1.87
62171271--62171524	48	5.4	47	72	10	187	28	25	20	25	1.99
62186997--62187367	48	7.8	48	90	1	566	33	6	28	31	1.82
62187006--62187367	190	1.9	190	97	0	679	33	6	28	31	1.83
62190021--62190212	40	4.8	40	81	7	196	25	22	27	25	2.00
62190021--62190203	79	2.3	81	83	7	223	24	22	27	25	2.00
62190074--62190238	79	2.1	79	83	6	201	26	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62193994--62194030	14	2.4	16	86	8	51	32	21	2	43	1.67
62226326--62226396	33	2.2	33	84	0	88	26	23	26	22	2.00
62229742--62229813	37	1.9	37	85	0	99	31	26	15	26	1.95
62234474--62234658	79	2.3	81	82	7	218	25	22	27	24	2.00
62234474--62234658	40	4.7	40	82	6	207	25	22	27	24	2.00
62234527--62234691	79	2.1	79	82	6	192	27	21	26	24	1.99
62243055--62243208	47	3.3	47	93	0	272	29	29	7	33	1.84
62247159--62247278	58	2.1	54	84	6	150	34	27	14	24	1.94
62247427--62247508	43	2.0	41	87	4	119	31	29	23	15	1.95
62247496--62247816	40	8.0	40	88	0	444	27	28	21	22	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332