genome.fa.s13.2.7.7.80.10.50.1000.302.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  302  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99975586--99975663	31	2.7	28	84	13	79	76	1	1	20	0.92
99975591--99975677	6	15.5	6	79	12	71	77	1	1	20	0.91
99975586--99975675	10	8.4	11	77	13	82	77	1	1	20	0.89
99975598--99975675	5	14.4	5	81	10	66	78	1	1	19	0.90
99980802--99980835	18	1.9	18	88	5	52	58	2	8	29	1.43
99981551--99981610	10	6.0	10	81	11	70	66	3	8	21	1.33
99988922--99988991	31	2.3	31	94	0	122	42	12	10	34	1.77
99990239--99990296	26	2.2	25	82	14	73	37	0	13	48	1.43
99990257--99990297	14	3.1	14	86	13	68	43	0	12	43	1.41
99990574--99990637	21	3.0	21	100	0	128	37	4	9	48	1.56
99998604--99998760	27	5.8	27	86	0	206	28	22	8	40	1.84
99998593--99998789	54	3.6	54	81	0	196	31	21	8	37	1.84
99998712--99998962	27	9.2	27	75	10	163	39	20	7	32	1.80
99998591--99998788	81	2.4	81	83	0	270	32	21	8	37	1.84
99998591--99998895	81	3.8	81	78	2	202	35	21	8	34	1.83
99998739--99998968	27	8.4	27	77	8	180	40	20	8	31	1.82
99998739--99998962	108	2.1	108	83	5	281	41	20	7	30	1.80
99999020--99999086	27	2.5	27	80	7	75	37	19	22	20	1.95
100001343--100001419	41	1.9	41	84	12	106	33	29	18	18	1.94
100002312--100002365	23	2.4	22	78	9	56	42	5	0	51	1.25
100008517--100008709	100	1.9	100	80	6	221	39	18	11	30	1.86
100008869--100008945	41	1.9	41	84	12	106	33	29	18	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100009457--100009485	9	3.2	9	100	0	58	24	13	0	62	1.32
100009845--100009898	23	2.4	22	78	9	56	42	5	0	51	1.25
100010452--100010534	31	2.7	31	83	10	118	28	16	26	27	1.97
100011392--100011425	7	5.1	7	92	7	54	14	0	0	85	0.60
100011386--100011425	6	6.3	6	91	5	53	15	0	2	82	0.77
100011386--100011425	13	3.1	13	82	13	55	15	0	2	82	0.77
100012907--100013063	27	5.8	27	89	0	215	29	22	8	40	1.83
100013015--100013197	27	6.8	27	78	6	138	38	21	8	32	1.83
100012894--100013074	81	2.2	81	82	0	227	32	22	7	38	1.82
100013042--100013265	54	4.1	54	76	11	163	40	20	8	31	1.82
100013056--100013294	81	2.9	82	72	8	209	39	19	9	31	1.83
100013191--100013266	29	2.7	28	82	11	86	43	15	7	32	1.76
100014199--100014268	25	2.8	24	86	4	86	27	24	22	25	2.00
100014224--100014295	25	3.0	23	84	10	81	27	22	23	26	1.99
100014488--100014569	30	2.7	30	96	3	148	29	18	24	28	1.98
100016919--100016983	32	2.0	32	100	0	130	30	6	24	38	1.80
100020163--100020188	13	2.0	13	100	0	52	46	15	0	38	1.46
100022961--100023009	20	2.6	19	81	12	66	48	6	2	42	1.39
100027498--100027544	22	2.2	21	84	3	58	36	21	8	34	1.84
100027515--100027593	19	4.2	19	87	9	117	34	16	11	37	1.85
100027516--100027590	36	2.0	39	89	10	120	33	16	12	38	1.85
100027554--100027593	17	2.6	15	82	17	55	32	15	12	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100034318--100034623	84	3.5	84	94	3	495	36	16	24	22	1.94
100034367--100034667	46	6.7	46	88	6	422	37	15	24	21	1.93
100034928--100034974	25	2.0	25	83	8	62	53	4	14	27	1.60
100039722--100039988	46	5.7	46	83	7	315	39	14	24	21	1.90
100039722--100039988	138	1.9	141	83	5	355	39	14	24	21	1.90
100040228--100040274	25	2.0	25	83	8	62	53	4	14	27	1.60
100043165--100043465	46	6.7	46	86	6	377	37	15	24	22	1.93
100043116--100043421	84	3.5	84	90	3	450	35	16	24	23	1.94
100043726--100043772	25	2.0	25	83	8	62	53	4	14	27	1.60
100044566--100044601	13	2.8	13	95	0	63	13	27	38	19	1.90
100046640--100046709	5	13.6	5	72	21	56	18	4	1	75	1.04
100046640--100046709	12	6.3	11	77	11	56	18	4	1	75	1.04
100046643--100046699	17	3.5	17	77	11	57	19	5	1	73	1.11
100052237--100052287	24	2.1	24	92	0	84	35	1	39	23	1.66
100053706--100053819	27	4.2	26	83	8	129	16	21	22	38	1.93
100053706--100053819	55	2.1	54	85	4	149	16	21	22	38	1.93
100054874--100054907	16	2.1	16	100	0	68	29	26	11	32	1.92
100064125--100064887	380	2.0	380	98	0	1465	36	8	11	42	1.73
100067520--100067703	61	3.0	61	79	7	160	20	25	21	33	1.97
100068152--100068188	12	3.3	12	78	21	53	43	18	0	37	1.51
100068149--100068194	21	2.2	21	96	0	83	41	21	0	36	1.54
100070018--100070050	9	3.7	9	91	0	57	24	12	24	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100070016--100070050	18	1.9	18	100	0	70	28	11	22	37	1.89
100070100--100070145	9	5.1	9	94	0	83	45	13	10	30	1.77
100070503--100070532	15	1.9	16	93	6	53	30	33	0	36	1.58
100074788--100074832	22	2.0	22	91	0	72	48	15	2	33	1.57
100078146--100078195	22	2.3	22	85	0	64	50	14	2	34	1.54
100084074--100084127	27	2.1	24	83	10	63	38	14	1	44	1.56
100084166--100084193	3	9.3	3	100	0	56	67	0	0	32	0.91
100084228--100084410	98	1.9	96	81	4	224	39	14	9	36	1.80
100084228--100084436	98	2.1	96	78	4	204	42	13	10	33	1.78
100087481--100087661	27	6.7	27	83	3	204	40	21	8	28	1.83
100087481--100087739	54	4.8	54	78	7	211	40	19	9	30	1.83
100087673--100087724	27	1.9	27	88	7	79	40	13	11	34	1.81
100088163--100088216	20	2.7	20	97	2	99	22	25	35	16	1.95
100088670--100088763	25	3.8	25	94	1	154	26	26	22	24	2.00
100088982--100089064	31	2.7	31	94	3	143	28	15	26	28	1.96
100099747--100099807	32	1.9	32	100	0	122	31	6	24	37	1.81
100106734--100106794	32	1.9	32	100	0	122	31	6	22	39	1.80
100129666--100129696	7	4.4	7	100	0	62	61	0	0	38	0.96
100133387--100133418	15	2.1	15	94	0	55	31	9	0	59	1.29
100134259--100134303	14	3.2	14	80	0	54	48	24	0	26	1.51
100134462--100134639	41	4.4	40	86	1	221	19	19	24	37	1.94
100134462--100134670	82	2.6	81	82	4	224	20	18	22	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100134543--100134670	41	3.2	40	79	3	130	20	17	20	41	1.91
100135805--100135856	25	2.1	25	89	3	79	25	19	23	32	1.97
100135904--100135952	21	2.3	21	85	0	71	36	20	8	34	1.82
100139139--100139185	23	2.1	23	88	4	69	51	29	0	19	1.47
100139120--100139222	53	1.9	54	84	2	136	49	29	1	19	1.59
100139155--100139230	16	5.0	15	70	19	50	50	31	1	17	1.54
100139336--100139400	7	9.1	7	76	3	58	24	1	27	46	1.62
100139353--100139403	15	3.5	15	81	2	59	21	1	29	47	1.62
100139717--100139841	7	17.1	7	74	12	74	21	1	36	40	1.63
100139979--100140024	7	6.6	7	87	0	56	17	0	50	32	1.47
100139975--100140023	14	3.4	14	94	2	80	18	0	48	32	1.48
100140124--100140167	16	2.6	17	82	7	54	52	2	2	43	1.26
100140136--100140185	26	1.9	26	87	0	73	50	4	4	42	1.40
100140293--100140324	16	1.9	17	93	6	57	25	0	6	68	1.12
100140401--100140851	115	3.9	117	83	4	551	28	13	25	31	1.94
100140420--100140851	231	1.9	231	85	2	609	28	13	26	31	1.94
100142954--100143007	20	2.8	20	80	5	58	53	0	7	38	1.29
100143148--100143179	16	2.0	16	100	0	64	56	12	0	31	1.37
100143794--100143933	43	3.0	43	83	16	199	51	15	0	32	1.48
100143812--100143983	52	3.3	52	84	4	231	48	16	1	33	1.57
100143794--100143983	95	1.9	99	88	9	289	48	15	1	33	1.55
100145695--100145720	12	2.2	12	100	0	52	34	7	26	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100148980--100149008	14	2.1	14	93	6	51	34	0	10	55	1.34
100149818--100149972	43	3.6	43	82	6	163	28	25	18	27	1.98
100149861--100149993	43	3.1	43	84	2	160	29	26	18	26	1.98
100153466--100153529	21	2.9	21	72	17	58	39	3	9	48	1.51
100155596--100155726	18	7.3	18	90	4	203	35	10	15	38	1.82
100155604--100155726	35	3.5	35	95	2	210	35	11	14	38	1.82
100155596--100155727	53	2.5	53	92	5	212	36	10	15	37	1.82
100158099--100158153	26	2.1	26	100	0	110	40	14	7	38	1.74
100158453--100158503	7	6.9	7	79	20	59	84	0	15	0	0.63
100158450--100158510	14	4.5	13	78	15	61	85	0	13	1	0.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332