Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  166  of  332  ( 39766 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54813939--54814004
21
3.1
21
82
0
60
31
16
48
3
1.62
54830098--54830266
45
3.6
46
77
14
161
23
31
18
26
1.97
54834205--54834265
30
2.0
30
100
0
122
19
9
39
31
1.84
54838877--54839048
87
2.0
89
86
6
244
34
11
11
42
1.77
54843574--54843722
43
3.5
43
77
6
149
26
16
24
32
1.96
54843574--54843740
43
3.9
43
75
6
142
26
16
24
32
1.96
54850526--54850578
24
2.2
24
86
6
72
37
5
11
45
1.64
54851574--54851676
37
2.8
37
95
2
181
23
32
21
23
1.98
54851817--54852588
48
16.0
48
91
1
1215
31
27
6
35
1.81
54856570--54856855
40
7.2
40
90
0
428
26
27
20
25
1.99
54858081--54858183
37
2.8
37
95
2
181
23
32
21
23
1.98
54858324--54859283
48
20.0
48
91
1
1498
31
26
5
35
1.80
54863959--54864130
40
4.2
40
74
9
157
25
15
26
31
1.96
54863972--54864138
86
1.9
86
98
0
325
26
14
25
33
1.95
54865007--54865037
15
2.1
15
93
0
53
38
0
16
45
1.47
54868511--54868567
24
2.4
24
90
0
87
38
7
7
47
1.58
54871317--54871364
19
2.6
18
81
15
53
54
4
14
27
1.59
54877377--54877493
50
2.3
50
88
2
164
25
26
18
29
1.98
54892165--54892246
42
1.9
43
90
7
132
42
24
10
21
1.85
54900024--54900105
42
1.9
43
87
2
121
43
25
8
21
1.81
54900808--54900862
21
2.6
22
85
8
78
27
7
34
30
1.84
54900827--54900873
21
2.4
21
86
10
64
31
6
34
27
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54904208--54904243
5
7.2
5
100
0
72
80
0
0
19
0.71
54905905--54905936
15
2.1
15
94
0
55
31
0
0
68
0.90
54906026--54906081
27
2.1
26
81
15
62
39
5
1
53
1.34
54906190--54906407
108
2.0
106
96
2
402
34
6
5
54
1.48
54906610--54906643
15
2.3
15
89
0
50
35
2
11
50
1.54
54906797--54906826
4
7.5
4
100
0
60
26
0
23
50
1.50
54906975--54907025
25
2.0
25
81
7
59
19
7
1
70
1.21
54907179--54907204
12
2.2
12
100
0
52
84
7
0
7
0.77
54918908--54919072
74
2.2
75
85
1
215
27
13
20
37
1.91
54919245--54919278
14
2.5
13
86
13
50
17
20
5
55
1.62
54919161--54919773
90
6.8
87
73
16
399
27
17
17
36
1.93
54919185--54919799
88
6.8
88
69
16
355
27
17
18
36
1.94
54918984--54919735
280
2.7
276
82
9
884
27
16
17
37
1.92
54919612--54919646
17
2.1
17
88
0
52
17
5
2
74
1.14
54919439--54919799
89
4.1
88
79
10
376
27
17
17
37
1.92
54922339--54922372
15
2.3
15
89
0
50
35
2
11
50
1.54
54922886--54922910
11
2.3
11
100
0
50
84
8
0
8
0.79
54923801--54923868
28
2.4
28
80
0
73
29
19
23
27
1.98
54935574--54935618
18
2.5
18
100
0
90
13
22
42
22
1.88
54936178--54936255
40
2.0
40
84
0
102
20
16
33
29
1.95
54940093--54940132
17
2.2
17
86
13
53
7
10
5
77
1.11
54945973--54946113
62
2.3
62
86
2
185
29
25
22
22
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54952327--54952391
25
2.7
22
76
19
67
6
24
0
69
1.11
54952951--54953204
62
4.1
62
84
0
319
28
25
23
22
1.99
54952951--54953202
124
2.0
124
86
0
351
28
25
23
21
1.99
54957424--54957499
18
3.9
19
73
20
68
60
6
1
31
1.30
54957419--54957499
40
2.0
41
95
2
146
59
7
1
32
1.33
54958242--54958285
14
3.1
14
83
6
54
72
6
4
15
1.22
54958248--54958350
14
7.2
14
71
17
70
76
5
7
9
1.15
54958259--54958397
26
5.3
25
79
10
102
76
5
8
8
1.14
54958266--54958330
18
3.7
18
76
14
73
78
3
9
9
1.06
54958266--54958333
33
2.0
34
94
2
120
76
2
11
8
1.12
54958339--54958407
25
2.7
26
80
12
72
79
4
5
10
1.03
54958309--54958407
51
1.9
51
86
8
139
77
6
7
9
1.11
54958343--54958418
35
2.2
35
83
4
91
78
5
6
9
1.07
54958339--54958417
10
7.9
10
76
17
51
79
5
5
10
1.03
54958354--54958425
35
2.0
36
89
2
110
75
6
6
11
1.20
54960253--54960403
47
3.2
47
71
16
134
29
17
29
24
1.97
54967286--54967333
23
2.2
22
85
7
62
47
6
16
29
1.71
54967293--54967338
23
2.0
23
100
0
92
47
8
13
30
1.72
54967778--54967943
46
3.6
46
76
8
167
27
16
28
27
1.97
54967778--54967991
46
4.6
46
76
9
132
26
17
29
26
1.98
54971169--54971218
26
2.0
24
88
7
73
64
6
0
30
1.18
54971189--54971247
21
2.8
21
78
12
59
69
8
0
22
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54976367--54976391
10
2.5
10
100
0
50
36
0
64
0
0.94
54979641--54979667
12
2.2
12
100
0
54
33
0
0
66
0.92
54991120--54991166
21
2.2
22
92
3
78
21
19
38
21
1.94
54993426--54993472
19
2.5
19
76
10
51
72
4
2
21
1.12
54996599--54996696
48
2.0
48
94
0
169
33
6
29
30
1.82
55001439--55001468
14
2.1
14
100
0
60
36
0
36
26
1.57
55001536--55001565
14
2.1
14
100
0
60
13
0
40
46
1.43
55003122--55003371
41
6.1
41
85
2
283
21
22
21
35
1.96
55013432--55013648
46
4.7
44
74
14
143
29
16
28
26
1.97
55020959--55021130
46
3.7
44
74
12
141
29
15
29
26
1.96
55029436--55029686
40
6.3
40
84
5
312
24
19
27
27
1.99
55037558--55037810
40
6.3
40
85
5
332
23
20
28
27
1.99
55037558--55037810
121
2.1
120
91
2
418
23
20
28
27
1.99
55042320--55042380
18
3.4
18
100
0
122
18
31
36
14
1.91
55048531--55048885
48
7.4
48
85
0
442
29
16
26
27
1.97
55052263--55052323
15
4.1
15
81
10
72
9
14
14
60
1.58
55054771--55055199
48
9.0
48
84
1
468
31
18
24
25
1.98
55054771--55055199
143
3.0
144
84
2
542
31
18
24
25
1.98
55057663--55057930
94
2.8
93
77
12
287
23
30
17
28
1.97
55057613--55057933
46
6.8
48
74
8
212
24
29
17
28
1.97
55059716--55059838
28
4.4
28
88
2
167
33
27
12
26
1.92
55067700--55067972
96
2.9
95
77
10
299
24
28
17
28
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55067598--55067969
48
7.8
46
71
12
211
25
29
17
27
1.98
55069559--55069813
55
4.8
53
76
9
211
36
17
24
21
1.95
55069566--55069766
108
1.8
110
84
4
273
34
16
25
23
1.96
55077133--55077387
55
4.8
54
80
9
278
36
17
25
21
1.95
55077140--55077340
108
1.8
110
90
4
327
34
17
25
22
1.96
55077573--55077612
20
2.0
20
90
0
62
42
0
20
37
1.52
55077579--55077609
16
1.9
16
93
0
53
41
0
22
35
1.54
55088361--55088386
13
2.0
13
100
0
52
30
0
7
61
1.24
55091227--55091575
96
3.6
97
92
3
548
32
8
29
28
1.87
55091227--55091575
49
7.3
49
92
3
561
32
8
29
28
1.87
55091227--55091575
145
2.4
145
94
0
594
32
8
29
28
1.87
55091694--55091772
37
2.1
37
90
0
122
24
18
31
25
1.98
55093660--55093819
40
4.0
40
90
2
243
22
22
26
28
1.99
55097087--55097196
20
5.9
18
68
19
57
40
1
3
53
1.29
55103654--55104213
47
11.7
47
95
2
926
32
8
29
29
1.87
55103654--55104213
145
3.9
145
94
3
960
32
8
29
29
1.87
55107174--55107229
22
2.5
22
83
8
69
46
16
3
33
1.64
55109492--55109558
26
2.6
26
76
4
64
37
23
19
19
1.94
55111348--55111629
48
5.9
48
77
7
268
20
17
28
33
1.96
55111345--55111629
96
3.0
95
86
3
392
20
18
28
32
1.96
55131319--55131345
14
1.9
14
100
0
54
62
14
7
14
1.51
55141692--55141765
29
2.6
29
86
4
96
27
16
31
25
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55151717--55151842
28
4.5
28
97
1
236
24
11
30
33
1.91
55155103--55155644
96
5.6
96
94
2
921
32
8
28
29
1.87
55155103--55155644
49
11.3
49
94
3
910
32
8
28
29
1.87
55155103--55155644
145
3.8
145
96
0
966
32
8
28
29
1.87
55155763--55155877
37
3.1
37
92
2
187
22
19
32
26
1.97
55166477--55166517
22
1.9
22
90
5
66
17
26
43
12
1.84
55167540--55167761
46
4.8
45
72
16
170
22
28
18
29
1.98
55171770--55171801
14
2.4
14
90
10
50
21
9
28
40
1.84
55171815--55172013
50
4.0
50
75
3
211
28
18
25
28
1.98
55171822--55172007
101
1.8
101
89
0
291
27
18
24
29
1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332