genome.fa.s3.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  100  of  333  ( 39894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31906581--31906790	47	4.5	46	80	8	203	28	17	30	23	1.97
31913830--31913862	13	2.6	13	95	4	59	42	0	18	39	1.50
31914167--31914213	23	2.0	23	100	0	94	17	31	29	21	1.96
31914190--31914298	46	2.3	47	83	9	134	27	21	29	22	1.99
31914190--31914341	47	3.3	47	78	9	132	26	20	29	23	1.99
31919976--31920040	3	21.7	3	100	0	130	33	0	0	66	0.92
31920772--31920823	13	4.2	12	80	14	61	48	0	9	42	1.36
31924093--31924264	46	3.7	48	81	11	180	24	29	19	26	1.99
31933196--31933415	50	4.6	47	75	12	182	25	31	16	25	1.97
31934574--31934660	3	29.3	3	68	23	51	31	2	4	62	1.28
31934575--31934637	27	2.3	28	78	10	76	26	3	4	65	1.28
31943531--31943562	15	2.0	17	88	11	50	43	31	0	25	1.55
31945939--31946082	46	3.1	44	69	21	107	29	28	19	22	1.98
31948249--31948504	40	6.4	40	92	2	385	25	27	22	24	2.00
31951635--31951807	46	3.7	46	75	13	183	21	20	28	30	1.98
31951632--31951802	93	1.8	93	92	0	288	21	20	29	29	1.98
31957488--31957631	46	3.1	44	70	21	107	29	27	20	22	1.98
31959740--31959845	44	2.5	40	83	13	115	36	21	14	27	1.92
31971613--31971701	34	2.6	35	82	10	89	28	21	23	26	1.99
31976121--31976654	47	11.3	47	91	1	771	32	9	29	28	1.89
31976113--31976654	192	2.9	192	90	1	835	32	9	29	28	1.89
31976773--31976851	37	2.1	37	88	0	113	24	17	31	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31986689--31986748	19	3.1	19	74	13	59	56	28	0	15	1.39
31992848--31992886	21	1.9	20	85	15	53	51	2	10	35	1.50
32015096--32015192	44	2.2	44	79	15	105	23	17	23	35	1.96
32015095--32015239	43	3.4	41	76	14	116	23	16	24	35	1.95
32017293--32017463	43	4.0	43	78	11	172	21	18	29	30	1.97
32017304--32017463	86	1.9	86	84	5	216	21	18	30	29	1.97
32025810--32026061	68	3.8	65	77	9	226	23	28	17	30	1.97
32028135--32028284	43	3.5	43	80	5	153	30	13	21	34	1.92
32046222--32046264	22	1.9	23	81	13	54	46	9	30	13	1.75
32051697--32051805	40	2.7	40	88	5	175	24	22	27	24	2.00
32052064--32052107	22	2.0	21	83	16	54	31	18	13	36	1.90
32066679--32066844	43	3.9	43	77	5	158	25	13	27	33	1.94
32067090--32067122	17	2.0	17	88	5	50	21	6	18	54	1.64
32070247--32070396	75	2.0	75	98	0	291	43	8	17	31	1.78
32073169--32073197	6	4.8	6	100	0	58	86	0	0	13	0.58
32074800--32074863	31	2.1	31	90	0	101	21	23	15	39	1.92
32075072--32075154	25	3.4	25	90	5	125	31	21	19	27	1.97
32075227--32075273	20	2.3	20	92	7	78	34	19	10	36	1.86
32078531--32078708	27	6.6	27	84	3	205	29	28	15	26	1.96
32078552--32078707	82	1.9	81	88	3	233	29	28	15	26	1.96
32098804--32099029	40	5.7	40	80	8	221	25	26	22	25	2.00
32098804--32099029	80	2.8	78	79	9	251	25	26	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32120972--32121011	21	1.9	21	89	0	62	30	10	0	60	1.30
32124165--32124388	40	5.7	40	85	7	264	25	22	27	25	2.00
32124165--32124388	79	2.8	80	85	6	294	25	22	27	25	2.00
32124165--32124421	79	3.3	79	82	9	224	26	22	27	24	2.00
32132222--32132445	40	5.7	40	85	7	264	24	22	27	25	2.00
32132222--32132445	79	2.8	80	84	8	278	24	22	27	25	2.00
32132275--32132468	79	2.5	78	84	7	207	25	21	27	25	1.99
32139573--32139621	21	2.3	21	89	3	71	46	14	6	32	1.69
32143033--32143226	47	4.1	47	90	0	289	33	11	28	26	1.91
32143433--32143582	37	4.1	37	94	0	246	23	18	30	27	1.98
32144965--32145050	27	3.2	27	83	4	86	26	19	10	43	1.84
32145008--32145065	26	2.2	26	93	0	98	27	17	13	41	1.87
32145019--32145211	27	7.2	26	69	17	69	37	21	10	30	1.88
32145087--32145210	27	4.6	27	77	7	119	41	23	8	27	1.82
32145166--32145273	27	3.9	27	77	13	103	41	18	8	31	1.80
32145314--32145391	27	2.9	27	75	11	79	37	20	20	21	1.95
32146200--32146269	25	2.8	25	93	0	113	27	25	22	24	2.00
32146199--32146294	25	3.9	24	81	9	95	28	23	22	25	2.00
32146200--32146294	50	1.9	50	80	8	113	28	24	23	24	2.00
32146489--32146571	31	2.7	30	87	7	123	30	16	24	28	1.97
32149972--32150098	42	3.0	42	80	10	143	33	26	13	26	1.93
32168754--32169076	47	6.8	47	94	1	538	32	8	29	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32169195--32169273	37	2.1	37	85	0	113	24	17	31	26	1.97
32170490--32170841	40	8.8	40	91	2	546	23	20	28	26	1.99
32174693--32174968	47	5.8	47	93	1	435	32	8	30	28	1.87
32174693--32174968	96	2.9	94	91	3	435	32	8	30	28	1.87
32186819--32186868	26	1.9	26	87	0	73	38	28	20	14	1.91
32192917--32193030	42	2.7	43	77	8	117	27	24	19	28	1.98
32202114--32202270	46	3.4	46	91	1	253	28	25	22	23	1.99
32202114--32202279	69	2.4	70	90	7	259	28	24	22	24	1.99
32202114--32202270	23	6.8	23	85	5	228	28	25	22	23	1.99
32207558--32207669	6	18.0	6	67	17	59	49	14	17	18	1.80
32207557--32207669	31	3.6	31	91	3	165	49	14	17	18	1.79
32207601--32207658	19	3.4	19	65	30	58	46	17	17	18	1.84
32207806--32207907	27	3.8	26	88	5	132	36	21	23	18	1.95
32208066--32208130	22	3.0	22	80	8	78	33	23	23	20	1.97
32208573--32209041	27	17.6	27	86	3	601	23	22	21	33	1.98
32209026--32209204	27	6.6	27	84	0	214	30	7	21	40	1.82
32209026--32209204	54	3.3	54	88	1	270	30	7	21	40	1.82
32215661--32215691	16	1.9	16	100	0	62	6	22	19	51	1.69
32216484--32216515	5	6.2	5	92	7	55	78	0	21	0	0.76
32216460--32216515	15	3.6	16	78	7	71	71	0	25	3	1.02
32216463--32216515	25	2.1	26	82	10	65	71	0	24	3	1.02
32217538--32217581	19	2.4	18	85	7	54	40	9	0	50	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32218301--32218340	20	2.0	20	95	0	71	15	7	35	42	1.75
32219753--32219822	24	2.9	24	95	0	122	34	12	18	34	1.89
32222353--32222580	40	5.7	40	94	0	357	29	20	26	22	1.99
32229077--32229215	40	3.4	40	75	12	131	26	17	30	25	1.98
32237422--32237606	40	4.6	40	82	7	232	24	23	27	23	2.00
32237422--32237606	80	2.3	81	87	4	259	24	23	27	23	2.00
32238561--32238890	163	2.0	163	97	0	624	35	16	19	28	1.93
32245836--32246056	40	5.6	41	81	9	255	25	23	26	24	2.00
32247889--32247984	24	3.8	24	80	10	120	36	15	22	25	1.94
32247881--32247994	52	2.2	52	88	0	165	34	14	22	28	1.94
32248020--32248166	50	2.9	51	93	3	253	31	14	26	27	1.95
32255488--32255747	27	9.6	27	90	0	358	39	20	8	31	1.83
32255488--32255800	81	3.9	81	81	8	332	39	21	8	30	1.84
32255488--32255800	54	5.8	54	85	3	337	39	21	8	30	1.84
32255488--32255854	27	13.6	27	81	4	289	38	20	8	31	1.84
32255840--32256070	27	8.6	27	88	0	300	35	18	19	26	1.95
32256515--32256579	22	3.0	22	80	8	78	20	23	23	33	1.97
32256737--32256838	27	3.8	26	84	5	105	17	23	20	38	1.93
32256975--32257047	31	2.4	31	88	0	101	17	15	15	52	1.76
32256997--32257056	6	9.8	6	74	16	52	18	16	16	48	1.82
32256978--32257047	25	2.8	25	83	14	83	17	15	15	51	1.77
32262171--32262320	41	3.7	41	75	10	121	22	18	27	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32266586--32266752	40	4.2	40	84	5	214	26	27	21	23	1.99
32266577--32266752	79	2.2	79	85	6	232	26	27	21	24	1.99
32268734--32268831	27	3.5	28	88	5	128	32	28	13	25	1.93
32282073--32282186	55	2.1	55	82	9	135	34	21	24	20	1.97
32282097--32282186	27	3.2	28	82	7	103	32	22	24	21	1.98
32282292--32282385	28	3.3	28	86	1	125	32	6	25	35	1.81
32285174--32285485	47	6.6	47	92	1	480	29	29	8	32	1.87
32288897--32289256	40	9.1	40	86	1	483	25	26	21	25	2.00
32288897--32289256	119	3.0	118	89	2	533	25	26	21	25	2.00
32288897--32289256	79	4.5	79	84	3	445	25	26	21	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333