Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  283  of  333  ( 39894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93754901--93754935
18
1.9
18
94
0
61
34
14
14
37
1.86
93754906--93754942
18
2.1
18
89
0
56
40
10
13
35
1.80
93755110--93755218
45
2.4
45
89
3
166
43
20
18
18
1.89
93756944--93757004
9
6.8
9
80
10
54
13
11
0
75
1.05
93756958--93757004
17
2.7
18
86
6
69
17
10
0
72
1.12
93756958--93757000
13
3.3
13
83
9
52
16
11
0
72
1.13
93757019--93757071
22
2.3
23
84
9
65
35
7
3
52
1.48
93762687--93762732
19
2.4
19
85
7
58
19
21
15
43
1.87
93767373--93767605
44
5.3
43
65
17
138
32
22
24
21
1.98
93767361--93767700
88
3.9
88
89
1
461
31
21
24
22
1.98
93770788--93770839
24
2.3
23
83
6
61
73
1
5
19
1.14
93770867--93770927
26
2.3
26
82
5
68
55
3
3
37
1.32
93782680--93782710
10
3.1
10
100
0
62
58
0
29
12
1.35
93790750--93790900
43
3.5
43
87
3
223
25
20
31
23
1.98
93791478--93791510
16
1.9
18
88
11
52
18
12
18
51
1.76
93792675--93792716
21
2.0
21
95
0
75
21
14
21
42
1.88
93799866--93799901
15
2.4
15
100
0
72
27
13
33
25
1.94
93800404--93800438
18
1.9
18
100
0
70
45
0
0
54
0.99
93800408--93800467
20
3.1
19
81
9
59
43
1
1
53
1.20
93800461--93800498
19
2.1
18
90
9
60
31
0
2
65
1.06
93800596--93800628
16
2.1
16
88
11
50
75
3
0
21
0.93
93802989--93803015
13
2.1
13
100
0
54
29
0
14
55
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93805854--93805982
46
2.8
49
78
15
148
28
27
20
22
1.99
93805856--93805998
46
3.1
44
75
16
132
28
28
20
22
1.98
93807221--93807292
37
1.9
37
94
0
126
41
12
13
31
1.82
93808398--93808517
56
2.1
56
98
0
231
45
9
23
22
1.81
93809644--93809829
40
4.7
40
84
5
234
24
22
26
25
2.00
93809697--93809862
80
2.1
79
84
5
210
26
21
26
25
1.99
93812724--93812776
27
1.9
28
92
3
90
43
20
3
32
1.70
93812888--93812952
29
2.2
30
81
13
80
29
18
3
49
1.63
93813304--93813394
47
1.9
47
95
0
164
26
25
10
37
1.89
93813681--93813737
26
2.2
26
82
14
66
57
1
8
31
1.39
93846530--93846571
20
2.0
21
95
4
77
40
4
0
54
1.21
93846712--93846757
23
2.0
23
91
0
74
43
26
17
13
1.85
93849208--93849266
18
3.1
18
79
13
64
50
8
38
1
1.43
93849672--93849701
15
2.0
15
100
0
60
0
46
0
53
1.00
93850458--93850507
19
2.6
19
77
3
55
64
2
4
30
1.23
93853850--93853914
29
2.2
28
78
10
69
26
1
12
60
1.41
93853975--93854050
20
3.8
21
75
16
72
35
1
3
59
1.24
93853995--93854091
48
2.0
50
83
4
126
36
1
3
59
1.20
93854012--93854076
28
2.3
29
81
5
80
36
1
3
58
1.23
93853977--93854098
50
2.4
48
75
8
118
36
0
3
59
1.20
93854278--93854343
29
2.3
29
84
10
98
25
12
30
31
1.92
93855891--93855930
20
2.0
21
90
5
64
57
0
15
27
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93862969--93863077
54
2.0
54
94
0
191
44
2
23
28
1.67
93864259--93864309
22
2.2
22
86
6
66
31
1
17
49
1.58
93869991--93870018
10
2.8
10
100
0
56
89
0
10
0
0.49
93871051--93871087
19
1.9
19
94
0
65
40
8
5
45
1.56
93878449--93878480
11
2.9
11
95
0
55
62
0
3
34
1.11
93879068--93879116
19
2.6
19
77
6
55
14
4
8
73
1.21
93879079--93879117
19
2.0
19
90
5
60
17
2
10
69
1.28
93879098--93879143
25
1.9
23
86
8
65
28
0
8
63
1.24
93881895--93881926
16
2.1
16
88
11
50
65
0
0
34
0.93
93888091--93888148
15
3.6
15
72
17
53
44
3
1
50
1.29
93888176--93888221
13
3.1
16
82
14
55
45
0
4
50
1.21
93888237--93888271
16
2.2
16
89
0
52
57
0
0
42
0.99
93888233--93888278
13
3.1
15
72
15
51
52
0
0
47
1.00
93895998--93896146
43
3.5
43
74
9
117
25
24
21
28
1.99
93902599--93903001
182
2.2
182
86
3
565
20
23
13
42
1.87
93902594--93902993
46
8.7
46
88
2
538
21
23
13
42
1.88
93904877--93904940
24
2.5
27
77
10
80
56
3
0
40
1.15
93905158--93905225
30
2.2
31
79
7
77
33
14
2
48
1.59
93906136--93906180
22
2.0
22
100
0
90
31
24
4
40
1.75
93907789--93908011
40
5.6
39
78
7
180
26
20
26
26
1.99
93915174--93915345
79
2.2
79
81
3
202
25
20
28
25
1.99
93915174--93915343
40
4.3
40
86
2
191
25
21
28
25
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93918809--93918842
14
2.5
14
90
4
52
8
35
23
32
1.86
93918816--93918843
14
2.0
14
100
0
56
7
35
28
28
1.84
93919076--93919120
22
2.0
22
91
0
72
48
15
15
20
1.80
93927791--93928237
47
9.5
47
94
0
723
28
30
8
32
1.87
93927841--93927919
25
3.3
25
62
16
67
31
30
5
32
1.79
93930948--93931062
53
2.2
53
87
3
160
17
16
21
44
1.87
93931261--93931334
18
4.1
18
77
6
69
39
8
14
37
1.76
93931351--93931404
20
2.7
20
91
2
90
33
5
16
44
1.71
93932035--93932060
13
2.0
13
100
0
52
76
7
0
15
0.99
93938804--93938964
43
3.8
43
74
6
148
25
15
26
32
1.96
93940691--93940765
23
3.1
25
62
30
63
28
29
10
32
1.90
93940103--93940765
47
14.1
47
86
4
872
26
29
10
33
1.90
93940150--93940765
331
1.9
328
95
0
1009
26
29
11
33
1.90
93952208--93952264
29
1.9
30
85
3
80
56
22
3
17
1.56
93964007--93964087
42
1.9
42
82
7
101
34
30
13
20
1.92
93966266--93966312
25
1.9
24
87
12
69
31
21
2
44
1.64
93968197--93968269
27
2.8
25
69
18
60
19
27
20
32
1.97
93971121--93971159
20
2.0
20
85
10
53
43
0
10
46
1.37
93974290--93974384
40
2.4
40
81
8
115
35
36
13
13
1.85
93975410--93975450
20
2.0
21
85
4
57
80
2
17
0
0.82
93976634--93976674
20
2.0
20
85
0
55
31
26
7
34
1.84
93976687--93976743
16
3.4
16
68
17
53
57
5
21
15
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93976681--93976749
34
2.0
34
97
0
129
56
7
20
15
1.63
93978788--93978841
18
3.0
18
94
0
90
37
22
24
16
1.94
93978791--93978850
18
3.4
17
90
4
75
38
25
18
18
1.93
93979905--93979949
22
2.0
22
82
0
54
42
0
4
53
1.21
93984263--93984316
19
2.7
19
80
5
63
48
1
0
50
1.11
93984280--93984365
33
2.5
32
77
11
82
43
1
3
52
1.26
93999065--93999102
20
1.9
20
88
0
58
36
0
5
57
1.21
93999825--93999864
21
1.9
21
89
0
62
32
0
2
65
1.06
93999840--93999870
12
2.5
13
89
10
55
41
0
0
58
0.98
94008109--94008141
12
2.8
12
90
0
57
6
24
42
27
1.78
94009838--94009875
19
2.0
19
89
0
58
68
2
0
28
1.03
94014717--94014773
28
2.0
28
93
0
96
43
17
14
24
1.86
94016385--94016441
29
1.9
30
82
3
71
40
21
10
28
1.86
94017509--94017565
22
2.6
22
75
5
62
40
22
1
35
1.65
94018242--94018369
47
2.7
47
77
0
130
32
27
14
25
1.95
94019798--94019886
25
3.7
25
77
10
78
39
19
22
19
1.93
94019882--94019949
26
2.6
26
88
0
91
41
17
23
17
1.90
94023934--94023980
23
2.1
23
84
7
62
23
4
14
57
1.55
94034130--94034188
25
2.4
25
82
0
73
30
18
6
44
1.76
94038086--94038176
34
2.6
34
80
3
101
27
25
26
20
1.99
94049561--94049806
42
5.9
42
87
3
327
33
20
20
25
1.97
94049559--94049825
126
2.1
126
86
4
378
34
21
19
25
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94049875--94049908
14
2.4
14
95
0
59
52
20
8
17
1.71
94050134--94050189
21
2.7
21
85
0
76
3
42
19
33
1.69
94051282--94051420
18
8.0
18
67
30
65
34
0
20
44
1.52
94051282--94051420
7
16.0
9
65
32
65
34
0
20
44
1.52
94051327--94051706
26
15.1
26
86
7
518
32
0
20
46
1.56
94051399--94051702
19
16.5
19
63
26
95
31
0
20
46
1.57
94051566--94051687
18
6.4
18
67
26
74
35
1
18
44
1.60
94051327--94051706
51
7.5
51
88
6
528
32
0
20
46
1.56
94051743--94051890
74
2.0
74
100
0
296
40
6
1
51
1.37
94052040--94052110
13
5.5
13
86
0
106
50
2
7
39
1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333