Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  319  of  333  ( 39894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104121293--104121348
23
2.5
22
81
18
55
44
0
25
30
1.54
104129222--104129300
28
2.8
28
86
0
104
35
10
24
30
1.88
104138385--104138427
6
7.2
6
91
0
68
44
0
34
20
1.52
104152188--104152373
73
2.5
73
99
0
363
40
24
6
27
1.80
104152374--104152402
3
9.7
3
100
0
58
68
0
0
31
0.89
104156734--104156759
3
8.7
3
100
0
52
69
0
0
30
0.89
104157879--104158043
57
2.8
57
88
5
233
24
18
11
45
1.82
104158455--104158492
17
2.2
17
90
0
58
68
0
0
31
0.90
104158455--104158492
9
4.4
9
83
9
53
68
0
0
31
0.90
104158635--104158660
9
2.9
9
100
0
52
46
0
0
53
1.00
104160126--104160164
11
3.5
11
80
13
53
74
5
10
10
1.21
104160128--104160174
22
2.1
22
92
0
76
68
4
10
17
1.35
104160422--104160452
6
5.2
6
96
0
53
87
0
12
0
0.55
104160418--104160455
20
2.0
20
89
5
60
84
0
15
0
0.63
104160528--104160556
10
2.7
11
94
5
51
34
0
3
62
1.12
104160865--104160916
16
3.2
16
71
17
54
65
3
7
23
1.35
104160905--104160941
19
1.9
19
88
0
56
72
2
5
18
1.15
104161220--104161274
23
2.4
23
79
8
60
60
3
3
32
1.32
104160934--104161938
135
7.5
134
92
2
1609
56
6
8
28
1.53
104160934--104161938
404
2.5
399
91
3
1621
56
6
8
28
1.53
104162187--104162648
200
2.3
200
97
0
870
38
11
6
42
1.68
104164374--104164518
72
2.0
72
85
2
193
24
26
15
33
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104168035--104168279
126
2.0
123
95
2
445
22
20
3
53
1.59
104168257--104168288
15
2.1
16
94
5
57
0
18
3
78
0.89
104168468--104168521
26
2.0
28
89
7
85
25
11
5
57
1.55
104168968--104169008
19
2.2
19
86
0
55
39
7
0
53
1.29
104171189--104171221
16
2.1
16
100
0
66
39
12
6
42
1.67
104178854--104178909
19
3.0
18
80
10
58
62
5
1
30
1.28
104178859--104178915
19
3.2
18
74
16
55
63
5
1
29
1.27
104178951--104178996
23
2.0
24
91
4
76
65
0
2
32
1.05
104180397--104180435
7
5.6
7
87
0
60
38
15
2
43
1.60
104184952--104185173
121
1.9
113
88
7
336
33
6
12
48
1.66
104187217--104187312
48
2.0
48
100
0
192
25
12
12
50
1.75
104198121--104198349
42
5.4
42
84
1
269
47
6
17
27
1.73
104198121--104198349
85
2.7
84
83
2
280
47
6
17
27
1.73
104200424--104200489
21
3.0
22
76
8
80
40
25
18
15
1.89
104201889--104201928
21
2.0
20
90
5
62
7
25
7
60
1.50
104201935--104201966
5
6.2
5
96
3
55
56
0
0
43
0.99
104201935--104202017
16
5.5
16
72
17
63
54
2
1
42
1.21
104201989--104202017
8
3.6
8
100
0
58
62
0
0
37
0.96
104205070--104205104
18
1.9
18
94
0
61
20
0
5
74
1.02
104206114--104206154
21
2.0
21
90
0
64
14
56
4
24
1.58
104219774--104220620
44
19.2
45
80
3
830
28
15
25
29
1.96
104224859--104224902
21
2.1
21
84
16
56
56
2
4
36
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104225408--104225481
28
2.6
29
83
14
91
31
12
10
45
1.76
104228832--104228872
14
2.9
14
82
17
57
53
0
2
43
1.13
104229396--104229425
15
2.0
15
93
0
51
76
6
0
16
0.99
104233079--104233103
12
2.1
12
100
0
50
60
0
0
40
0.97
104234101--104234166
32
2.1
32
91
0
105
51
1
21
25
1.56
104236011--104236035
7
3.6
7
100
0
50
64
12
0
24
1.27
104235994--104236035
14
2.9
15
86
6
52
71
7
0
21
1.09
104240369--104240447
39
2.0
39
97
0
149
29
27
21
21
1.99
104240431--104240462
15
2.1
15
94
0
55
46
28
12
12
1.78
104240392--104240501
54
2.0
54
94
0
193
34
29
19
17
1.94
104240446--104240527
39
2.1
39
93
0
137
31
26
20
20
1.98
104250648--104250674
7
3.9
7
100
0
54
74
0
11
14
1.08
104251641--104251665
13
1.9
13
100
0
50
76
0
24
0
0.80
104256737--104256774
20
1.9
20
94
0
67
39
28
2
28
1.70
104260922--104261000
40
2.0
40
100
0
158
44
15
22
17
1.86
104266798--104266876
25
3.3
25
62
22
60
31
10
27
30
1.90
104266772--104266897
47
2.7
47
93
0
216
33
11
28
26
1.92
104266866--104267001
48
2.8
48
92
2
218
33
6
28
30
1.83
104267148--104267256
37
2.9
37
95
0
191
22
19
31
26
1.98
104269991--104270027
16
2.3
16
90
9
58
40
2
10
45
1.53
104275519--104275578
30
2.0
30
100
0
120
30
20
20
30
1.97
104276771--104276819
18
2.7
18
70
0
53
14
8
10
67
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104276809--104276965
3
52.3
3
68
14
83
28
7
3
61
1.38
104276807--104276899
30
3.0
29
76
13
96
25
4
4
65
1.29
104277901--104278271
126
2.9
127
83
3
453
29
17
16
36
1.92
104281869--104281918
22
2.2
21
83
13
64
42
2
0
56
1.11
104284709--104284756
3
16.0
3
80
8
53
2
33
0
64
1.05
104288034--104288075
18
2.3
19
80
16
52
30
28
0
40
1.57
104288260--104288300
21
2.0
21
90
9
66
41
24
12
21
1.87
104288401--104288442
6
7.0
6
78
10
50
33
19
2
45
1.63
104288751--104288786
18
2.1
18
89
5
56
33
25
0
41
1.55
104289439--104289475
3
12.3
3
88
0
56
62
0
5
32
1.18
104289772--104289803
12
2.7
12
95
0
55
53
0
0
46
1.00
104291364--104291420
23
2.5
23
85
0
78
22
33
12
31
1.91
104291918--104291953
19
1.9
19
88
5
56
52
0
0
47
1.00
104293330--104293369
17
2.4
17
86
0
53
57
2
10
30
1.45
104293520--104293573
30
2.0
28
82
17
69
57
9
3
29
1.47
104296073--104296109
18
2.1
18
94
0
65
51
0
24
24
1.49
104296073--104296109
12
3.1
12
84
0
56
51
0
24
24
1.49
104299737--104299775
20
1.9
20
84
5
51
41
0
17
41
1.50
104302571--104302618
20
2.5
20
86
3
62
62
2
8
27
1.35
104303262--104303286
11
2.3
11
100
0
50
48
0
0
52
1.00
104304948--104305045
30
3.5
30
71
21
111
27
3
47
21
1.65
104304949--104305125
54
3.3
54
93
0
282
27
5
46
21
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104305111--104305233
18
6.8
18
93
0
210
32
3
46
17
1.65
104306819--104306873
20
2.7
20
80
2
56
65
9
3
21
1.37
104307301--104307354
24
2.2
24
83
0
63
37
3
1
57
1.27
104307363--104307403
21
2.0
21
85
9
57
56
7
0
36
1.27
104309146--104309235
42
2.1
42
89
0
135
44
17
15
22
1.86
104309216--104309261
13
3.5
13
84
0
56
54
13
4
28
1.57
104309216--104309273
26
2.2
26
78
6
64
53
12
6
27
1.63
104312811--104312857
19
2.4
19
80
16
51
63
2
4
29
1.25
104312780--104312916
60
2.3
60
80
13
144
65
1
3
29
1.18
104312877--104312921
15
3.0
14
81
12
54
66
0
0
33
0.92
104312879--104312930
16
3.1
16
78
10
52
69
0
1
28
0.99
104313710--104313746
18
2.1
17
95
5
65
35
5
13
45
1.66
104316213--104316313
51
2.0
51
94
0
175
17
32
17
31
1.94
104322552--104322659
26
4.2
26
89
0
162
33
5
23
37
1.78
104324786--104324851
24
2.8
24
90
0
105
48
24
16
10
1.78
104325030--104325069
3
13.3
3
94
0
71
32
2
0
65
1.06
104325441--104325478
3
12.7
3
88
0
58
34
0
2
63
1.09
104325536--104325585
21
2.3
21
93
3
82
22
6
26
46
1.74
104325947--104325976
3
10.3
3
92
7
53
33
0
0
66
0.92
104326350--104326387
3
12.7
3
100
0
76
34
0
0
65
0.93
104326450--104326492
21
2.0
21
90
0
68
23
4
23
48
1.69
104326631--104326719
42
2.1
42
89
4
135
38
14
29
17
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104326631--104326739
42
2.6
42
83
2
130
33
15
31
19
1.93
104326806--104326937
64
2.0
65
95
1
239
48
1
13
36
1.52
104327429--104327478
21
2.3
21
89
3
73
22
8
24
46
1.78
104327615--104327707
42
2.2
42
92
0
150
39
12
30
17
1.87
104325855--104327848
984
2.0
984
88
4
2963
36
13
16
33
1.87
104327880--104327904
3
8.3
3
100
0
50
32
0
0
68
0.90
104328337--104328395
21
2.7
21
81
5
64
22
6
22
49
1.73
104330412--104330484
19
3.9
19
89
7
123
36
10
16
35
1.84
104330433--104330470
17
2.5
15
80
19
51
39
10
15
34
1.82
104330412--104330507
19
4.8
22
84
10
79
36
9
16
37
1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333