genome.fa.s3.2.7.7.80.10.50.1000.195.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  195  of  333  ( 39894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63810349--63810391	20	2.2	20	100	0	86	41	4	23	30	1.74
63811278--63811324	19	2.5	19	85	0	67	25	6	19	48	1.72
63812580--63812648	34	2.0	34	94	0	120	17	13	13	56	1.67
63812583--63812659	34	2.3	34	86	4	102	18	11	15	54	1.70
63818266--63818443	27	6.6	27	81	3	169	29	27	15	26	1.96
63818266--63818443	54	3.3	55	81	3	191	29	27	15	26	1.96
63826385--63826562	27	6.6	27	81	3	160	29	27	15	27	1.96
63834874--63835049	46	3.8	46	79	12	216	20	21	28	29	1.98
63834871--63835042	93	1.8	93	96	0	317	20	21	29	28	1.98
63841729--63841904	46	3.8	46	79	12	216	20	19	28	30	1.97
63841726--63841897	93	1.8	93	94	0	308	20	20	29	29	1.98
63845354--63845427	31	2.4	32	77	11	82	24	5	5	64	1.36
63845695--63845730	18	1.9	18	88	5	54	38	0	5	55	1.23
63845756--63845813	24	2.5	22	81	10	71	37	0	6	55	1.27
63845756--63845820	22	2.8	23	78	17	71	38	1	7	52	1.40
63845756--63845857	47	2.2	46	80	15	104	37	1	6	53	1.39
63858064--63858305	76	3.3	72	82	8	281	27	14	21	36	1.92
63858284--63858312	13	2.2	13	100	0	58	13	13	10	62	1.55
63858236--63858447	90	2.4	89	88	5	304	29	17	20	33	1.95
63858500--63858645	73	2.0	73	89	0	220	26	17	25	30	1.98
63858625--63858655	14	2.2	14	94	0	53	16	9	6	67	1.39
63858713--63858748	18	2.0	18	88	0	54	13	8	5	72	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63860669--63860693	3	8.3	3	100	0	50	32	0	0	68	0.90
63861272--63861373	22	4.4	22	74	18	75	37	0	6	54	1.34
63863061--63863122	30	2.1	30	93	0	106	25	11	11	51	1.71
63868040--63869155	560	2.0	555	96	0	2034	29	20	17	33	1.95
63874154--63874193	19	2.2	18	86	13	55	60	0	0	40	0.97
63874482--63874512	9	3.4	9	100	0	62	61	0	0	38	0.96
63876325--63876384	17	3.2	19	81	15	72	25	5	0	70	1.08
63879018--63879110	45	2.1	45	83	4	116	27	25	13	32	1.94
63881405--63881494	45	2.0	45	95	0	162	43	5	3	47	1.43
63882026--63882125	28	3.4	28	68	18	78	34	0	5	61	1.18
63920663--63920703	20	2.0	21	86	13	59	56	7	4	31	1.48
63923347--63923380	14	2.4	14	100	0	68	47	5	14	32	1.69
63925941--63926121	41	4.4	40	77	5	166	38	21	17	22	1.93
63925942--63926128	82	2.3	82	81	9	220	38	20	17	22	1.93
63927763--63927816	27	2.0	27	100	0	108	29	11	18	40	1.85
63953864--63953907	20	2.2	20	91	0	70	36	31	2	29	1.70
63953993--63954114	42	2.9	42	81	7	147	29	24	14	31	1.95
63959648--63959735	28	3.2	28	82	3	99	36	21	26	15	1.94
63959842--63959900	26	2.3	25	82	8	73	28	10	23	37	1.88
63960968--63961022	18	2.8	19	76	10	58	67	0	29	3	1.08
63962022--63962054	16	2.1	16	94	0	57	69	3	0	27	1.03
63970003--63970137	56	2.4	56	92	0	216	34	23	11	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63975875--63975937	30	2.1	30	84	0	81	14	14	14	57	1.66
63991823--63991878	28	2.0	28	92	0	94	50	19	12	17	1.78
63992074--63992120	23	2.0	23	100	0	94	40	8	25	25	1.84
63999140--63999248	27	4.0	27	77	16	109	16	24	22	36	1.94
64007515--64007591	38	2.0	38	100	0	118	54	7	5	32	1.51
64011169--64011212	23	1.9	23	81	9	54	61	9	2	27	1.38
64011408--64011478	36	2.0	36	91	0	115	28	15	25	30	1.96
64011303--64011716	37	11.4	36	74	9	308	31	15	19	33	1.93
64011354--64011716	73	5.1	72	73	8	258	31	15	19	33	1.93
64013672--64013849	27	6.6	27	83	6	198	26	15	28	29	1.96
64013669--64013849	82	2.2	81	82	4	222	27	16	27	29	1.97
64038198--64038375	27	6.6	27	83	6	198	26	15	28	29	1.96
64038195--64038375	82	2.2	81	82	4	222	27	16	27	29	1.97
64044047--64044080	17	2.0	17	100	0	68	35	5	11	47	1.65
64044414--64044448	16	2.1	17	89	5	54	45	0	11	42	1.40
64048237--64048453	55	4.0	53	78	6	177	22	23	16	36	1.94
64055041--64055071	16	1.9	16	93	0	53	35	22	0	41	1.54
64055038--64055077	20	2.0	20	85	0	53	37	22	0	40	1.54
64055301--64055510	55	3.9	53	81	6	226	21	25	16	35	1.95
64066889--64066939	25	2.0	25	100	0	102	21	15	7	54	1.66
64069888--64070103	46	4.6	46	79	11	224	27	18	30	23	1.98
64069885--64070103	94	2.3	94	83	9	252	27	19	30	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64072234--64072295	29	2.2	29	82	2	72	27	30	16	25	1.96
64072530--64072564	8	4.4	8	88	0	52	2	22	22	51	1.61
64073680--64073712	16	2.1	16	88	11	50	15	6	27	51	1.66
64085671--64085815	40	3.6	40	82	4	175	25	24	26	23	2.00
64087672--64087711	13	3.1	13	85	0	62	17	27	37	17	1.92
64098242--64098280	21	1.9	20	89	5	60	12	38	28	20	1.89
64101421--64101784	46	7.9	46	85	4	457	20	23	14	41	1.89
64101421--64101771	92	3.8	92	94	0	594	20	22	14	41	1.89
64101421--64101784	138	2.6	137	87	2	505	20	23	14	41	1.89
64104997--64105101	27	3.9	26	79	7	111	17	23	21	37	1.94
64104997--64105108	54	2.1	54	84	3	145	16	23	22	37	1.94
64112894--64112922	13	2.2	13	100	0	58	31	0	13	55	1.39
64118305--64118353	12	3.9	12	79	10	53	8	10	0	81	0.87
64118307--64118337	14	2.2	14	94	0	53	3	9	0	87	0.66
64118305--64118343	20	2.0	20	89	0	60	5	10	0	84	0.76
64121243--64121271	13	2.2	13	100	0	58	31	0	13	55	1.39
64124581--64124749	40	4.3	40	90	1	216	23	21	28	26	1.99
64124528--64124751	80	2.8	79	83	4	254	24	20	28	26	1.99
64157727--64157952	40	5.7	40	86	4	262	26	21	26	26	1.99
64157782--64157985	80	2.6	79	80	9	193	27	19	26	25	1.99
64157727--64157952	120	1.9	120	82	9	291	26	21	26	26	1.99
64161908--64161932	13	1.9	13	100	0	50	32	4	24	40	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64174086--64174267	47	3.9	48	80	8	162	20	27	20	30	1.98
64174135--64174304	47	3.6	48	80	10	165	21	27	21	30	1.98
64174135--64174309	46	3.8	45	80	10	165	21	27	21	30	1.98
64177377--64177532	29	5.4	29	84	6	185	26	33	14	25	1.94
64177380--64177539	58	2.8	57	85	6	207	26	33	12	27	1.92
64177751--64177793	16	2.7	16	85	0	68	6	13	20	58	1.59
64178425--64178467	19	2.4	19	88	7	63	37	13	11	37	1.82
64178433--64178469	19	1.9	19	100	0	74	37	10	16	35	1.83
64178433--64178478	19	2.2	22	88	11	71	39	8	17	34	1.80
64178757--64178793	18	2.1	17	90	5	56	32	0	0	67	0.91
64188150--64188318	40	4.2	40	85	1	205	23	21	30	24	1.99
64188150--64188354	79	2.6	80	78	6	204	24	21	30	23	1.99
64196046--64196211	40	4.2	40	85	2	201	23	21	30	24	1.99
64215433--64215644	40	5.3	41	83	5	274	24	20	27	27	1.99
64215433--64215625	80	2.4	80	95	0	350	24	20	28	26	1.99
64223749--64223960	40	5.3	41	82	5	265	25	20	27	27	1.99
64223749--64223960	80	2.7	79	91	2	336	25	20	27	27	1.99
64226286--64226340	28	2.0	28	82	7	67	27	21	23	27	1.99
64229539--64229665	56	2.3	56	90	0	191	25	15	25	33	1.95
64231044--64231082	18	2.2	17	90	4	60	43	0	12	43	1.42
64232435--64232696	39	6.6	39	86	6	311	24	27	22	25	2.00
64240458--64240667	39	5.3	39	92	2	316	24	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64240458--64240719	78	3.3	78	83	10	306	24	27	22	25	2.00
64244751--64244781	14	2.3	13	94	5	53	32	6	29	32	1.83
64251729--64251777	24	2.0	24	88	0	71	30	18	28	22	1.97
64258818--64258985	25	7.0	24	87	6	216	27	22	21	27	1.99
64258817--64258985	49	3.5	48	84	7	218	27	22	21	28	1.99
64258839--64258984	23	6.1	23	88	7	211	28	21	21	28	1.99
64259031--64259101	20	3.5	20	88	0	106	32	21	11	35	1.89
64260440--64260646	27	7.6	27	75	6	148	31	8	19	40	1.82
64260524--64260674	81	1.9	81	81	2	187	28	8	20	42	1.81
64260678--64260876	27	7.3	27	83	2	220	39	7	23	30	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333