genome.fa.s3.2.7.7.80.10.50.1000.203.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  203  of  333  ( 39894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66541190--66541266	39	2.0	39	92	0	127	41	12	9	36	1.75
66544681--66544738	15	3.9	15	79	4	73	39	0	3	56	1.16
66544684--66544741	29	2.0	29	100	0	116	41	0	3	55	1.17
66547053--66547326	33	8.2	33	67	13	112	31	14	24	30	1.94
66547015--66547328	101	3.1	101	85	2	425	30	14	25	30	1.95
66549252--66549382	49	2.7	48	76	3	136	30	20	25	22	1.98
66556248--66556314	34	2.0	34	85	5	91	26	17	26	28	1.98
66558416--66558481	21	3.0	22	80	10	82	42	0	1	56	1.08
66558407--66558464	21	2.8	20	87	10	82	37	0	1	60	1.07
66558415--66558482	20	3.3	20	80	10	75	42	0	1	55	1.08
66558530--66558576	20	2.4	19	82	10	67	25	0	2	72	0.96
66558449--66558639	104	1.8	103	85	7	271	36	3	3	56	1.33
66558626--66558759	31	4.4	27	72	23	90	44	2	0	52	1.18
66558667--66558718	11	3.8	13	77	22	54	44	0	0	55	0.99
66558474--66558703	104	2.2	105	82	11	276	38	3	3	54	1.33
66564775--66564846	30	2.4	30	88	0	99	27	18	25	29	1.98
66567294--66567354	28	2.3	26	89	10	90	70	4	0	24	1.07
66567308--66567354	13	3.5	13	73	21	51	68	4	0	27	1.08
66567302--66567358	28	2.0	28	100	0	114	64	7	0	28	1.19
66567236--66567341	54	2.0	54	80	10	119	66	4	0	29	1.12
66567292--66567349	15	3.9	16	74	19	63	70	5	0	24	1.07
66567500--66567555	21	2.7	21	85	0	85	32	1	0	66	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66568471--66568531	18	3.4	18	83	0	86	42	14	9	32	1.79
66569856--66569894	17	2.3	17	86	8	53	0	30	0	69	0.89
66570108--66570143	19	1.9	19	94	5	65	27	27	0	44	1.55
66570109--66570154	18	2.5	19	86	6	60	28	30	0	41	1.56
66573694--66573746	13	4.1	13	76	9	54	37	22	7	32	1.82
66575230--66575270	6	6.5	6	83	10	55	78	4	0	17	0.93
66575233--66575272	20	2.0	20	90	0	62	75	7	0	17	1.03
66575290--66575358	9	7.7	9	82	6	86	27	1	18	52	1.54
66575290--66575358	18	3.8	18	88	0	111	27	1	18	52	1.54
66579682--66579788	26	4.1	26	90	2	162	32	8	23	35	1.85
66581387--66581482	27	3.6	26	86	6	129	20	25	19	34	1.96
66586709--66586816	26	4.2	26	91	0	180	33	7	23	36	1.83
66588411--66588496	42	2.0	42	95	0	154	24	24	16	34	1.95
66588460--66588550	27	3.4	26	79	14	78	21	19	19	38	1.94
66605927--66606172	49	4.9	50	81	2	289	26	18	26	28	1.98
66608556--66608721	40	4.1	41	93	3	241	27	27	21	24	1.99
66620174--66620218	3	15.7	3	88	9	67	62	0	37	0	0.96
66620174--66620218	14	3.1	14	93	3	72	62	0	37	0	0.96
66620174--66620219	11	4.1	11	94	2	74	60	0	39	0	0.97
66620227--66620274	23	2.0	25	84	8	64	75	0	25	0	0.81
66620709--66620768	31	1.9	31	93	0	102	30	1	11	56	1.45
66621112--66621148	20	1.9	20	88	5	58	54	8	0	37	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66630575--66630719	42	3.5	42	81	1	166	29	24	16	29	1.96
66651672--66651717	20	2.3	20	100	0	92	26	21	15	36	1.93
66653905--66654104	41	4.9	41	79	1	177	37	21	16	26	1.93
66653936--66654044	42	2.6	41	86	4	139	42	20	13	23	1.88
66653936--66654094	81	1.9	81	82	5	194	36	20	15	27	1.93
66654433--66654480	14	3.4	14	80	13	53	43	29	0	27	1.55
66654433--66654527	29	3.3	28	75	11	77	46	31	0	22	1.52
66654672--66654751	38	2.2	35	86	8	108	23	3	26	46	1.69
66655822--66655985	82	2.0	82	84	4	215	34	17	21	26	1.95
66655822--66655985	42	4.0	40	78	6	159	34	17	21	26	1.95
66655823--66655989	41	4.1	41	81	3	183	33	16	21	28	1.95
66656883--66657057	85	2.0	87	86	2	246	40	21	5	33	1.77
66659116--66659149	16	2.1	16	88	0	50	35	0	8	55	1.31
66659382--66659503	22	5.7	22	69	9	108	45	4	11	38	1.62
66659357--66659490	43	3.1	43	78	11	175	44	8	8	38	1.67
66659710--66660005	9	33.6	9	73	11	141	46	16	1	35	1.54
66659720--66659895	17	10.6	17	70	16	93	49	14	1	34	1.54
66659706--66659908	43	4.6	44	76	9	189	48	15	1	33	1.54
66659906--66659991	43	2.0	41	93	4	145	44	16	0	39	1.48
66659697--66660005	124	2.4	129	85	6	391	46	16	0	35	1.53
66665681--66665774	47	2.0	47	97	0	179	18	6	26	48	1.71
66672730--66672891	42	3.9	41	72	4	119	25	26	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66672728--66672881	84	1.8	84	87	2	229	25	26	18	29	1.98
66675026--66675107	29	2.9	27	74	13	74	65	0	15	18	1.27
66677147--66677692	271	2.0	271	95	0	975	30	6	23	40	1.78
66682268--66682337	27	2.6	27	95	2	113	31	28	12	27	1.93
66682268--66682365	28	3.5	28	88	2	126	30	28	14	26	1.95
66690116--66690185	27	2.6	27	95	2	113	31	28	12	27	1.93
66690116--66690213	28	3.5	28	88	2	126	30	28	14	26	1.95
66699942--66699979	19	2.0	20	85	15	53	39	23	0	36	1.55
66700209--66700379	93	1.8	93	91	0	279	29	28	20	22	1.98
66700204--66700376	46	3.7	46	79	10	199	30	27	20	22	1.98
66700799--66700858	30	2.0	30	83	0	75	31	26	5	36	1.78
66708478--66708559	38	2.2	38	95	2	148	20	14	15	48	1.80
66710676--66710767	42	2.2	42	92	0	148	34	21	14	29	1.93
66710912--66711137	26	8.8	26	91	0	314	27	21	23	27	1.99
66710912--66711137	52	4.4	52	93	1	350	27	21	23	27	1.99
66711942--66712029	27	3.3	27	85	3	106	19	25	19	36	1.95
66712059--66712394	27	12.4	27	75	3	190	30	9	20	39	1.85
66712172--66712416	54	4.6	54	78	5	219	28	8	22	40	1.84
66712169--66712376	81	2.6	81	90	0	310	27	8	22	41	1.82
66712172--66712510	27	12.6	27	78	6	179	30	8	21	38	1.84
66712172--66712511	54	6.3	53	75	6	211	30	8	21	39	1.84
66720696--66720838	27	5.3	27	87	0	169	40	23	7	28	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66720696--66720839	54	2.7	54	90	0	207	40	23	7	28	1.82
66720821--66720893	27	2.7	27	70	4	67	36	24	8	30	1.85
66720885--66720992	54	2.0	54	90	3	173	37	19	19	24	1.94
66720884--66720991	27	4.0	27	82	0	126	36	19	20	24	1.95
66721724--66721828	27	3.9	27	81	12	117	21	22	20	34	1.97
66721716--66721828	54	2.1	53	82	6	131	22	22	20	35	1.96
66721949--66722169	6	35.8	6	67	15	112	21	20	13	45	1.84
66721952--66722090	25	5.6	25	77	6	122	22	20	12	44	1.85
66721949--66722169	74	3.1	74	83	7	292	21	20	13	45	1.84
66721949--66722169	68	3.2	68	86	3	271	21	20	13	45	1.84
66722119--66722207	37	2.4	37	80	0	106	19	21	12	47	1.82
66724098--66724240	27	5.3	27	84	1	153	38	24	9	27	1.87
66724098--66724241	54	2.7	53	86	2	180	38	25	9	27	1.87
66724115--66724259	27	5.4	27	80	4	78	40	24	8	26	1.85
66724115--66724259	54	2.7	54	81	6	168	40	24	8	26	1.85
66724286--66724420	27	5.0	27	88	1	182	34	19	21	24	1.96
66724400--66724461	26	2.3	27	75	10	65	20	19	22	37	1.95
66724948--66724996	22	2.2	22	85	7	64	22	28	22	26	1.99
66725154--66725262	27	4.1	27	76	5	96	22	21	18	38	1.93
66725380--66725603	6	36.3	6	69	18	122	19	18	13	48	1.81
66725383--66725577	25	7.8	25	74	10	120	19	18	14	47	1.83
66725408--66725486	37	2.1	37	85	0	104	21	18	15	44	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66725380--66725582	62	3.3	62	92	0	343	19	18	13	47	1.82
66725416--66725551	37	4.0	37	69	24	118	19	19	14	47	1.83
66729217--66729388	40	4.3	40	88	2	222	25	27	21	25	1.99
66746484--66746625	43	3.3	42	70	13	119	38	25	14	22	1.92
66746505--66746617	44	2.7	41	77	9	118	35	25	16	22	1.95
66750232--66750306	39	1.9	39	94	0	132	29	32	9	29	1.88
66752282--66752440	46	3.4	46	81	5	176	28	18	30	22	1.98
66754408--66754505	29	3.4	29	90	1	144	26	15	31	26	1.96
66755922--66756047	46	2.6	49	85	5	159	28	20	29	21	1.98
66758973--66759035	29	2.1	30	88	2	92	23	36	19	20	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333