genome.fa.s3.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  168  of  333  ( 39894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55307252--55307455	40	5.1	40	81	8	229	24	27	22	25	2.00
55313433--55313586	28	5.5	28	95	0	256	33	27	12	26	1.92
55313433--55313611	56	3.2	56	89	1	261	33	27	12	26	1.92
55321686--55321836	28	5.4	28	91	1	214	33	27	11	26	1.92
55347625--55347684	27	2.3	26	85	2	75	35	20	23	21	1.96
55347727--55347778	27	2.0	26	84	3	68	34	21	26	17	1.95
55348410--55348474	26	2.5	26	87	2	85	26	20	16	36	1.93
55358758--55358809	26	2.0	26	100	0	104	26	19	19	34	1.95
55360076--55360114	16	2.4	16	100	0	78	48	23	17	10	1.78
55361612--55361667	27	2.0	27	86	3	76	39	17	8	33	1.81
55361621--55361720	27	3.7	28	80	9	100	40	19	10	31	1.84
55361705--55361765	27	2.3	27	79	0	68	32	27	8	31	1.86
55361716--55361926	27	7.8	27	88	2	253	27	23	8	40	1.83
55361824--55362070	27	9.1	27	81	3	129	35	19	9	35	1.85
55361703--55361953	54	4.6	54	84	1	191	30	21	8	38	1.84
55361662--55361953	81	3.6	81	74	3	192	30	21	9	38	1.85
55361905--55362046	54	2.6	54	83	5	187	37	21	9	31	1.86
55362083--55362134	27	1.9	27	92	0	86	40	9	11	38	1.74
55362188--55362240	27	2.0	27	92	7	90	30	22	26	20	1.98
55363181--55363241	20	3.0	20	90	0	86	32	9	21	36	1.86
55363285--55363437	24	6.4	24	87	3	211	28	22	22	27	1.99
55363287--55363430	47	3.1	46	88	4	207	27	22	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55363285--55363424	71	2.0	71	94	0	244	26	23	22	27	1.99
55366431--55366520	27	3.3	28	86	6	123	42	15	10	32	1.80
55366431--55366537	54	2.0	54	83	7	137	40	18	10	30	1.84
55366515--55366573	27	2.2	27	84	0	73	33	27	8	30	1.86
55366426--55366547	54	2.2	54	78	7	131	40	18	9	31	1.84
55366526--55366738	54	3.9	54	86	1	275	28	23	8	39	1.84
55366526--55366736	81	2.6	81	84	3	273	27	23	8	39	1.84
55366526--55366737	27	7.9	27	85	4	241	27	23	8	40	1.84
55366607--55366936	27	12.1	27	78	7	130	36	19	9	35	1.84
55366472--55366763	81	3.6	81	74	5	239	30	22	9	38	1.85
55366458--55366871	54	7.7	54	78	3	233	33	21	9	35	1.85
55366661--55366936	54	5.1	53	74	12	166	37	18	9	34	1.83
55366892--55366944	27	2.0	27	88	7	81	43	9	11	35	1.73
55368282--55368338	9	5.9	9	73	15	51	35	8	21	35	1.84
55368280--55368350	20	3.5	20	92	0	115	36	9	21	32	1.86
55368395--55368524	24	5.4	24	92	2	199	29	22	22	26	1.99
55368732--55368795	31	2.1	31	90	0	101	35	15	23	25	1.94
55369313--55369395	39	2.1	39	97	0	157	13	32	20	33	1.91
55371557--55371663	27	4.0	27	81	4	110	37	20	9	32	1.85
55371641--55371700	27	2.2	27	84	0	75	33	28	8	30	1.86
55371652--55371863	27	7.9	27	85	4	257	26	23	8	40	1.84
55371659--55371863	54	3.8	54	88	0	293	27	21	9	41	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55371841--55372008	27	6.2	27	78	6	144	38	22	8	30	1.84
55371841--55371980	54	2.6	54	86	4	201	38	22	8	30	1.84
55371841--55372093	81	3.1	79	73	10	206	37	20	9	32	1.85
55371841--55372062	54	4.1	53	77	10	182	39	20	9	31	1.83
55372082--55372188	27	4.0	27	72	16	78	37	19	19	23	1.94
55373349--55373396	25	2.0	24	87	4	69	33	25	16	25	1.96
55373435--55373493	9	6.1	9	74	14	55	35	8	20	35	1.83
55373433--55373503	20	3.5	20	92	0	115	35	9	21	33	1.86
55373548--55373677	24	5.4	24	92	2	199	29	22	22	26	1.99
55373885--55373947	30	2.1	30	90	0	99	34	15	23	25	1.95
55379516--55379632	62	1.9	60	82	5	146	47	5	4	42	1.45
55379678--55379730	26	2.0	27	82	10	65	47	0	1	50	1.12
55382888--55382981	47	2.0	47	95	0	170	30	19	23	26	1.98
55384499--55384644	75	1.9	75	94	0	256	48	15	8	28	1.73
55390994--55391158	81	2.0	81	98	0	321	35	13	13	36	1.85
55399160--55399198	19	2.1	19	85	9	53	69	0	7	23	1.14
55403305--55403412	42	2.5	42	80	4	128	29	17	24	28	1.97
55407541--55407600	30	2.0	30	87	6	86	40	6	25	28	1.80
55412454--55412631	27	6.6	27	81	5	171	28	28	16	26	1.97
55412475--55412630	82	1.9	81	86	3	224	28	28	16	26	1.97
55420495--55420672	27	6.6	27	81	3	178	29	28	15	26	1.96
55420516--55420671	82	1.9	81	85	3	215	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55435375--55435555	40	4.6	40	79	10	185	25	20	27	25	1.99
55435424--55435588	79	2.1	79	80	6	183	26	20	27	26	1.99
55443389--55443573	79	2.3	81	83	7	227	24	22	27	24	2.00
55443390--55443573	40	4.6	40	82	9	207	25	22	27	24	2.00
55443442--55443606	79	2.1	79	83	6	201	26	21	27	24	1.99
55448878--55448904	13	2.1	13	100	0	54	14	18	37	29	1.91
55459874--55460185	40	7.8	40	90	2	473	23	28	21	26	1.99
55459874--55460193	162	2.0	161	91	1	525	23	27	21	26	1.99
55470226--55470318	46	2.0	46	91	2	150	52	12	12	21	1.73
55480766--55480988	119	1.9	120	83	6	292	25	27	21	24	1.99
55480764--55480988	40	5.7	40	84	6	278	25	28	21	24	1.99
55488654--55488838	40	4.7	40	82	6	216	24	27	22	24	2.00
55488656--55488838	79	2.3	81	82	7	214	24	27	22	25	2.00
55496509--55496731	119	1.9	120	84	6	301	25	27	22	24	2.00
55496507--55496731	40	5.7	40	85	6	287	25	28	22	24	2.00
55503736--55503780	20	2.2	21	84	4	56	48	0	11	40	1.39
55515291--55515342	20	2.6	19	77	17	52	71	3	3	21	1.18
55524787--55524920	67	2.0	67	85	2	180	20	28	20	29	1.98
55534156--55534513	47	7.6	47	92	1	581	29	29	7	33	1.85
55534156--55534513	143	2.5	141	92	0	581	29	29	7	33	1.85
55536907--55537084	27	6.6	27	83	3	205	27	14	27	30	1.95
55536908--55537063	82	1.9	81	86	3	224	27	14	27	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55536907--55537084	82	2.2	81	83	3	223	27	14	27	30	1.95
55540093--55540143	25	2.0	25	100	0	102	43	11	5	39	1.66
55542517--55542792	40	6.8	40	88	4	392	25	29	21	24	1.99
55542517--55542792	124	2.3	120	88	3	401	25	29	21	24	1.99
55548567--55548615	21	2.3	22	79	13	57	46	0	30	22	1.52
55549143--55549208	13	5.1	13	67	7	53	33	6	24	36	1.80
55549502--55549585	45	1.9	44	85	7	118	36	4	8	50	1.54
55554165--55554301	67	2.0	67	87	0	193	18	26	24	31	1.97
55554249--55554310	27	2.3	27	80	8	72	19	19	24	37	1.94
55557882--55557936	28	2.0	28	96	0	101	34	10	32	21	1.89
55559892--55559922	10	3.1	10	95	0	53	29	38	9	22	1.86
55575684--55575749	32	2.1	32	94	0	114	27	13	22	36	1.92
55577713--55577751	21	1.9	21	89	5	62	20	30	35	12	1.90
55585008--55585268	46	5.6	47	75	11	175	24	28	16	29	1.97
55589663--55589694	16	1.9	17	93	6	57	65	6	6	21	1.38
55589845--55589881	14	2.6	14	95	0	65	43	10	16	29	1.82
55591980--55592140	46	3.4	47	80	10	138	27	15	32	24	1.95
55592686--55592764	35	2.3	35	93	0	131	26	15	15	43	1.86
55593371--55593411	22	1.9	21	85	5	55	9	36	31	21	1.86
55608071--55608360	48	6.0	48	93	1	483	34	6	27	31	1.82
55613814--55613921	55	2.0	55	83	3	137	21	28	23	26	1.99
55618020--55618056	18	2.1	18	100	0	74	32	16	37	13	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55621167--55621200	17	2.0	17	94	0	59	55	0	5	38	1.24
55622518--55622579	24	2.6	24	92	0	97	17	14	35	32	1.90
55640885--55640920	17	2.1	17	94	0	63	61	0	5	33	1.19
55642245--55642386	24	5.9	24	86	4	180	20	15	32	31	1.94
55642245--55642385	72	2.0	72	87	2	203	20	14	32	31	1.93
55650815--55650938	47	2.6	47	89	5	180	21	29	20	27	1.98
55652010--55652058	20	2.5	20	96	0	89	46	22	8	22	1.77
55655061--55655238	27	6.6	27	85	3	223	26	14	27	30	1.95
55655062--55655217	82	1.9	81	89	3	242	26	14	27	30	1.95
55655058--55655238	82	2.2	81	84	2	238	27	14	27	30	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333