Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  324  of  333  ( 39894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105254864--105255000
44
3.2
44
63
15
113
42
2
21
33
1.68
105254868--105255043
86
2.0
87
96
2
327
42
4
20
32
1.72
105267065--105267106
20
2.1
20
82
8
50
73
2
2
21
1.06
105267086--105267182
8
11.2
9
72
19
73
63
2
2
31
1.17
105267103--105267179
18
4.6
16
74
15
66
61
2
2
33
1.24
105267087--105267175
34
2.6
34
77
8
92
64
2
2
31
1.18
105267156--105267193
18
2.1
19
90
5
60
71
0
0
28
0.87
105267085--105267209
43
2.9
44
75
18
102
64
2
2
31
1.19
105267273--105267323
9
5.7
9
79
9
50
62
0
3
33
1.13
105267274--105267324
27
1.9
26
84
4
66
62
0
3
33
1.13
105267438--105267467
14
2.1
15
93
6
53
16
0
0
83
0.65
105267828--105267950
43
2.9
41
76
19
110
31
2
2
63
1.20
105267858--105267948
34
2.7
33
75
12
89
32
2
2
62
1.19
105267844--105267950
9
12.3
9
71
15
66
31
1
1
64
1.15
105267936--105267979
22
2.0
21
82
4
52
27
2
6
63
1.31
105274041--105274126
44
2.0
43
97
2
163
36
16
8
39
1.78
105274616--105274653
13
2.7
15
84
8
53
15
7
15
60
1.57
105276768--105276799
4
8.0
4
100
0
64
50
0
25
25
1.50
105281389--105281430
15
2.8
16
85
10
61
11
7
11
69
1.37
105281653--105281767
30
3.8
30
77
6
101
46
2
21
29
1.65
105281902--105282019
3
38.7
3
81
6
112
64
7
2
25
1.33
105282246--105282300
28
2.0
28
82
7
67
49
7
10
32
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105283356--105283387
3
11.3
3
87
12
50
68
0
0
31
0.90
105283521--105283557
17
2.1
18
85
14
51
64
2
5
27
1.28
105283680--105283728
24
2.0
25
84
4
64
55
6
4
34
1.44
105283835--105283880
11
4.2
11
82
0
65
54
6
2
36
1.39
105285296--105285330
9
3.9
9
88
0
52
57
0
5
37
1.23
105288905--105289043
39
3.6
39
87
5
201
14
26
22
36
1.92
105293918--105293946
13
2.3
13
94
5
51
20
10
0
68
1.18
105296045--105296137
43
2.2
42
80
1
96
24
19
18
37
1.94
105315793--105315830
18
2.2
17
86
13
51
44
0
0
55
0.99
105318901--105318925
13
1.9
13
100
0
50
44
0
0
56
0.99
105320650--105320706
29
2.0
29
83
10
73
42
0
12
45
1.41
105322045--105322093
10
4.9
10
78
9
55
40
0
2
57
1.10
105322041--105322097
20
3.1
18
85
14
64
36
0
1
61
1.07
105322064--105322108
19
2.3
20
92
3
74
44
0
0
55
0.99
105322073--105322128
19
2.9
19
81
5
60
42
0
3
53
1.18
105329741--105329796
19
2.9
19
78
5
60
55
3
0
41
1.17
105329762--105329814
19
2.8
20
88
8
76
58
0
0
41
0.98
105329773--105329814
18
2.3
18
88
12
59
61
0
0
38
0.96
105331166--105331223
29
2.0
29
83
6
73
44
12
0
43
1.41
105332956--105332980
13
1.9
13
100
0
50
56
0
0
44
0.99
105348164--105348209
15
3.1
15
77
20
51
63
0
0
36
0.95
105348152--105348213
21
3.0
21
73
21
58
61
0
0
38
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105348151--105348237
34
2.6
32
78
15
88
60
0
0
39
0.97
105349138--105349298
51
2.9
58
81
12
219
32
16
22
28
1.95
105350412--105350475
29
2.2
28
86
2
83
46
14
10
28
1.77
105350630--105350675
23
2.0
23
84
12
60
45
10
6
36
1.65
105350637--105350681
23
2.0
23
82
8
56
40
13
8
37
1.76
105352785--105352826
22
1.9
22
85
0
57
52
9
19
19
1.72
105362201--105362238
15
2.5
15
83
8
51
68
0
5
26
1.11
105362647--105362676
3
10.0
3
100
0
60
33
0
0
66
0.92
105362800--105362851
22
2.4
20
79
17
59
34
0
3
61
1.14
105376776--105377310
129
4.3
123
82
7
625
29
15
20
34
1.93
105376776--105377310
248
2.1
251
94
2
936
29
15
20
34
1.93
105377182--105377710
72
7.2
72
88
4
693
30
16
18
34
1.93
105377186--105377714
145
3.6
146
88
4
721
30
16
18
34
1.93
105377632--105377849
86
2.5
86
89
1
330
27
17
19
35
1.94
105377813--105377963
58
2.7
55
84
3
167
34
15
18
31
1.93
105377982--105378016
14
2.5
14
95
0
61
17
14
8
60
1.58
105377997--105378153
73
2.2
73
91
2
253
26
17
22
33
1.96
105377916--105378211
160
1.8
159
89
3
468
26
17
21
34
1.95
105378155--105378379
56
4.1
56
81
13
261
31
16
16
36
1.91
105378656--105378756
30
3.4
30
84
1
132
29
22
3
43
1.71
105378653--105378778
59
2.1
59
78
5
139
33
20
3
42
1.68
105380118--105380155
19
2.0
20
94
5
69
42
13
10
34
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105380147--105380173
10
2.7
10
100
0
54
92
0
0
7
0.38
105380238--105380669
17
25.0
18
70
15
218
30
13
11
44
1.79
105380238--105380374
55
2.5
53
80
3
157
27
13
12
46
1.78
105380251--105380392
73
1.9
73
81
8
173
30
14
11
42
1.81
105380480--105380652
91
1.9
88
86
5
240
30
12
12
45
1.78
105387348--105387600
46
5.5
46
90
0
355
40
15
22
21
1.90
105387299--105387610
138
2.3
130
86
5
401
39
15
22
22
1.92
105387871--105387917
25
2.0
25
83
8
62
53
4
14
27
1.60
105388562--105388718
38
4.1
38
92
1
253
17
20
24
37
1.94
105388562--105388739
38
4.6
38
90
2
187
18
20
24
35
1.95
105392141--105392167
12
2.2
12
100
0
54
33
14
0
51
1.43
105394675--105394844
87
2.0
87
92
0
286
27
11
10
51
1.70
105401355--105401385
14
2.2
14
94
0
53
35
6
3
54
1.42
105407337--105407389
26
2.1
25
82
6
63
54
3
1
39
1.29
105410867--105411022
53
2.9
53
83
6
199
43
13
4
38
1.64
105416786--105416840
15
3.9
15
79
13
71
25
32
14
27
1.95
105424196--105424233
15
2.5
16
79
12
53
44
15
31
7
1.75
105424255--105424294
21
1.9
21
84
0
53
30
22
32
15
1.94
105424579--105424665
29
3.0
29
91
1
138
20
33
20
25
1.97
105424580--105424670
30
3.1
30
90
1
139
20
31
19
27
1.97
105428430--105428544
57
2.0
57
100
0
230
35
5
20
38
1.75
105428454--105428542
27
3.2
27
65
20
74
34
6
17
40
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105430656--105430686
3
10.3
3
100
0
62
67
0
0
32
0.91
105435047--105435200
70
2.2
69
80
4
175
41
11
18
27
1.86
105438317--105438374
14
4.2
14
73
8
57
46
0
10
43
1.38
105438318--105438376
13
4.4
13
72
19
50
44
0
10
45
1.37
105438654--105438695
18
2.2
20
88
12
63
42
0
4
52
1.22
105445428--105445473
18
2.3
20
85
10
60
50
13
2
34
1.53
105447126--105447150
8
3.1
8
100
0
50
36
0
0
64
0.94
105448196--105448224
15
1.9
15
100
0
58
31
0
0
68
0.89
105457860--105457956
40
2.4
41
91
1
151
12
42
23
21
1.87
105458403--105458435
10
3.2
11
87
12
52
84
0
9
6
0.76
105459146--105459181
13
2.8
14
84
16
51
27
25
0
47
1.52
105459133--105459173
18
2.2
19
87
12
59
29
24
0
46
1.53
105459320--105459431
39
2.8
40
72
10
95
30
27
18
23
1.98
105459671--105459709
18
2.1
19
85
4
53
51
7
0
41
1.31
105461015--105461071
5
11.0
5
78
14
62
56
1
0
42
1.10
105461014--105461069
12
4.5
12
81
16
69
55
1
0
42
1.10
105461016--105461071
26
2.2
26
90
6
69
55
1
0
42
1.10
105461640--105461831
62
3.0
64
90
4
307
16
30
13
39
1.87
105468418--105468460
12
3.8
12
81
12
54
48
0
4
46
1.22
105472705--105472772
19
3.2
23
64
20
65
52
17
7
22
1.69
105472693--105472775
41
2.0
41
100
0
166
51
19
7
21
1.70
105481468--105481550
45
1.9
42
83
9
105
36
9
4
49
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105483548--105483672
61
2.0
61
100
0
250
45
8
6
40
1.59
105483551--105483646
30
3.2
30
61
19
72
45
7
5
41
1.54
105484812--105484836
11
2.3
11
100
0
50
44
16
12
28
1.83
105504868--105504892
3
8.3
3
100
0
50
68
0
32
0
0.90
105511008--105511086
21
3.5
21
70
18
68
45
3
5
45
1.43
105510990--105511088
48
2.1
48
98
0
189
43
5
7
44
1.53
105516941--105516987
14
3.4
14
74
11
51
59
2
6
31
1.34
105517270--105517306
18
2.0
19
89
5
58
37
0
0
62
0.96
105518565--105518625
31
1.9
32
86
3
88
40
1
11
45
1.50
105521198--105521244
19
2.4
20
82
10
53
55
4
2
38
1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333