genome.fa.s3.2.7.7.80.10.50.1000.282.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  282  of  333  ( 39894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93365206--93365394	55	3.5	53	84	5	236	21	24	19	35	1.96
93365206--93365408	109	1.9	108	88	3	309	21	24	17	36	1.95
93365381--93365502	47	2.6	47	94	0	208	25	24	13	36	1.91
93375235--93375282	26	1.9	25	84	16	64	56	0	0	43	0.99
93377904--93377945	3	14.3	3	80	5	50	64	0	2	33	1.07
93378604--93378653	14	3.8	13	82	12	57	76	0	4	20	0.95
93378604--93378635	6	5.2	6	96	3	55	81	0	3	15	0.82
93379940--93380237	88	3.4	87	90	1	443	34	19	16	28	1.94
93380027--93380465	226	1.9	230	84	6	597	35	18	17	28	1.94
93380258--93380477	89	2.6	85	84	8	277	36	18	17	27	1.93
93382917--93382960	15	2.9	15	80	12	54	29	4	9	56	1.50
93382985--93383040	24	2.3	25	78	9	62	35	5	3	55	1.40
93394528--93394702	55	3.2	55	95	0	305	20	17	9	52	1.72
93395219--93395363	44	3.3	43	72	13	134	35	19	22	22	1.96
93407462--93407540	37	2.1	37	88	4	115	25	30	18	25	1.98
93407659--93408031	47	8.1	47	90	4	571	28	29	8	32	1.87
93407659--93408031	140	2.7	140	90	3	560	28	29	8	32	1.87
93411735--93411878	40	3.6	40	90	1	209	23	25	23	27	2.00
93411722--93411878	80	2.0	80	89	0	242	24	25	22	27	2.00
93411766--93411960	40	4.8	40	80	6	105	24	26	23	26	2.00
93411735--93411911	80	2.2	81	83	6	218	23	25	22	28	1.99
93411727--93411957	120	1.9	120	81	6	281	24	25	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93412260--93412337	29	2.7	29	80	7	88	28	34	12	24	1.92
93412319--93412421	43	2.4	43	100	0	206	26	35	15	22	1.94
93414253--93414331	37	2.1	37	88	4	115	25	30	18	25	1.98
93414449--93414780	47	7.1	47	93	0	531	28	29	9	32	1.88
93420751--93420862	44	2.5	44	83	8	138	27	25	25	21	1.99
93425681--93425758	31	2.5	31	80	0	93	44	7	11	35	1.69
93431667--93431698	12	2.7	12	100	0	64	31	15	0	53	1.43
93434366--93434461	42	2.2	41	79	13	104	22	18	27	31	1.97
93434366--93434500	43	3.1	43	76	12	118	25	17	25	32	1.96
93435105--93435156	26	2.0	26	100	0	104	23	11	19	46	1.82
93436766--93436924	63	2.5	63	76	6	169	25	7	33	33	1.84
93438611--93438656	7	6.6	7	79	0	56	39	0	30	30	1.57
93438611--93438666	14	4.0	14	83	0	67	39	0	30	30	1.57
93438613--93438652	21	1.9	21	89	0	62	35	0	35	30	1.58
93443476--93443505	16	1.9	16	93	6	53	26	26	0	46	1.53
93449327--93449358	13	2.5	13	100	0	64	81	0	0	18	0.70
93459969--93460037	19	3.5	18	78	13	66	37	7	17	37	1.77
93460488--93460625	45	3.1	44	88	2	204	18	20	21	40	1.91
93460628--93460738	51	2.1	53	81	6	138	18	14	20	45	1.84
93465769--93465923	43	3.6	43	93	1	258	31	31	24	12	1.92
93465921--93466008	38	2.3	38	94	0	149	30	25	21	22	1.99
93465985--93466031	23	2.0	23	100	0	94	34	21	14	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93465947--93466069	61	2.0	61	98	0	237	31	24	19	24	1.98
93466008--93466109	38	2.7	38	92	3	161	31	23	20	24	1.98
93465921--93466100	99	1.8	99	93	0	315	31	23	21	23	1.98
93478072--93478101	14	2.1	14	93	0	51	30	13	16	40	1.87
93480218--93480253	17	2.0	18	89	10	56	0	27	0	72	0.85
93480227--93480274	25	1.9	25	86	0	69	2	27	2	68	1.11
93480227--93480274	21	2.3	21	82	13	55	2	27	2	68	1.11
93480284--93480330	25	1.9	24	83	12	60	12	10	2	74	1.16
93480340--93480408	5	13.8	5	100	0	138	59	0	0	40	0.97
93482094--93482242	39	3.9	39	88	4	205	28	17	4	48	1.67
93482094--93482242	77	1.9	77	87	5	221	28	17	4	48	1.67
93486253--93486293	20	2.0	20	86	9	57	36	0	12	51	1.40
93492369--93492472	26	4.0	26	92	0	172	34	24	8	32	1.86
93499013--93499116	26	4.0	26	93	0	181	35	24	7	32	1.84
93506878--93506917	19	2.1	19	90	0	62	67	2	2	27	1.16
93518700--93518752	26	2.0	27	85	7	74	26	11	22	39	1.88
93520241--93520348	26	4.2	26	90	0	171	36	26	4	32	1.77
93525729--93525781	26	2.0	27	85	7	74	26	11	22	39	1.88
93527256--93527358	26	4.0	26	93	1	181	34	24	7	33	1.84
93552852--93552902	25	2.0	26	81	11	61	56	7	7	27	1.55
93554982--93555032	21	2.4	21	80	6	59	29	9	3	56	1.49
93564636--93564664	12	2.5	12	94	5	51	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93567683--93567735	26	2.0	26	82	7	63	7	32	7	52	1.58
93575424--93575532	42	2.6	42	86	7	150	30	23	19	26	1.98
93575424--93575597	43	4.0	41	77	11	161	31	24	17	25	1.97
93583444--93583500	30	1.9	30	88	0	87	21	24	24	29	1.99
93587650--93587735	28	3.1	28	81	0	100	36	11	22	30	1.89
93589068--93589128	2	30.5	2	86	0	86	54	0	0	45	1.00
93589335--93589480	43	3.4	42	81	7	159	30	21	15	32	1.94
93589361--93589481	43	2.8	45	86	5	160	31	24	14	29	1.94
93589965--93590030	28	2.3	28	79	7	71	31	19	1	46	1.59
93590107--93590151	20	2.1	21	84	8	56	53	15	4	26	1.61
93596774--93596952	43	4.2	43	71	16	122	31	25	13	29	1.94
93600026--93600080	22	2.5	22	94	2	94	14	27	16	41	1.87
93602969--93603458	47	10.1	49	92	4	759	32	8	29	29	1.87
93603577--93603655	37	2.1	37	90	0	122	24	18	31	25	1.98
93611795--93611874	28	2.9	29	78	14	87	35	8	25	31	1.86
93612012--93612075	27	2.4	27	81	0	65	35	14	26	23	1.93
93614033--93614088	26	2.2	25	93	6	96	37	14	7	41	1.73
93614358--93614473	46	2.4	47	80	12	123	34	17	23	25	1.96
93614405--93614473	26	2.7	26	80	4	79	33	18	23	24	1.97
93620984--93621019	18	2.0	18	88	0	54	30	22	8	38	1.83
93640420--93640445	13	2.0	13	100	0	52	7	46	30	15	1.74
93647782--93647868	21	4.0	23	80	10	92	37	25	21	14	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93648245--93648296	15	3.5	15	89	0	86	51	13	0	34	1.41
93654161--93654222	21	2.8	22	75	7	72	40	24	20	14	1.90
93654597--93654654	15	3.8	15	88	2	89	51	12	0	36	1.39
93656946--93656987	12	3.4	12	81	15	50	16	2	2	78	0.96
93659627--93659896	138	2.0	138	99	0	531	24	17	26	30	1.97
93659807--93659978	39	4.4	39	88	5	233	20	25	28	26	1.99
93670128--93670155	13	2.2	13	100	0	56	28	0	32	39	1.57
93673352--93673436	44	1.9	44	85	0	116	17	20	24	37	1.93
93683448--93683570	61	2.0	61	95	0	219	25	17	8	47	1.77
93693663--93693958	18	16.1	18	73	7	191	36	15	11	36	1.83
93693756--93693958	72	2.8	71	82	5	221	36	14	11	37	1.82
93694121--93694236	45	2.6	44	83	6	153	45	17	17	19	1.85
93695137--93695265	7	17.4	7	85	7	159	15	0	38	44	1.52
93695137--93695265	15	8.7	14	83	9	159	15	0	38	44	1.52
93696082--93696139	5	11.6	5	100	0	116	60	0	0	39	0.97
93696232--93696284	21	2.5	22	78	9	65	58	3	0	37	1.16
93702478--93702554	25	3.2	25	90	5	124	11	23	16	48	1.79
93702491--93702564	22	3.2	22	78	5	67	14	20	18	45	1.85
93714441--93714495	16	3.4	16	84	0	65	36	7	27	29	1.84
93714791--93714832	21	2.0	21	90	9	68	59	7	0	33	1.25
93717266--93717312	5	9.8	5	78	17	55	38	0	0	61	0.96
93717266--93717311	8	6.0	8	80	10	60	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93725851--93725881	15	2.1	15	100	0	62	38	6	32	22	1.80
93726038--93726076	18	2.3	17	86	8	53	38	5	12	43	1.65
93726818--93726847	15	2.0	15	93	0	51	23	6	46	23	1.75
93730186--93730216	15	2.1	15	100	0	62	38	6	32	22	1.80
93730373--93730411	18	2.3	17	86	8	53	38	5	12	43	1.65
93736969--93737098	62	2.1	62	78	8	138	30	9	30	29	1.88
93740191--93740303	27	4.2	27	85	7	133	37	23	23	16	1.94
93740191--93740305	54	2.1	54	87	3	160	37	23	22	16	1.94
93741923--93742161	26	9.2	26	94	0	399	35	24	6	33	1.81
93747528--93747733	40	5.1	41	88	3	269	22	20	28	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333