Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  333  of  333  ( 39894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108450186--108450224
20
1.9
21
89
5
62
43
10
10
35
1.73
108451655--108451694
21
1.9
21
85
10
55
5
7
7
80
1.03
108460203--108460238
18
2.1
18
94
5
65
30
0
2
66
1.06
108464759--108464877
61
1.9
62
87
1
177
36
30
12
21
1.90
108465714--108465767
22
2.4
23
84
3
65
42
9
0
48
1.35
108469548--108469618
4
18.0
4
85
8
101
50
25
0
23
1.49
108481383--108481433
25
2.0
25
100
0
102
49
3
3
43
1.39
108483099--108483155
16
3.6
16
74
9
62
15
19
0
64
1.28
108485296--108485330
18
1.9
18
88
0
52
8
51
0
40
1.33
108488258--108488315
28
2.0
29
86
3
82
29
10
20
39
1.86
108488539--108488653
57
2.0
57
94
0
203
34
11
20
33
1.88
108492757--108492791
12
2.9
12
91
0
52
62
0
20
17
1.32
108493356--108493409
28
1.9
28
85
7
74
29
1
5
62
1.28
108493623--108493678
25
2.1
27
83
6
71
55
1
3
39
1.28
108496032--108496108
37
2.1
37
100
0
154
20
10
19
49
1.77
108507266--108507302
15
2.5
15
83
16
51
32
0
0
67
0.91
108519899--108519931
2
16.5
2
100
0
66
48
0
51
0
1.00
108523036--108523063
4
7.0
4
100
0
56
25
0
0
75
0.81
108545997--108546057
32
1.9
32
89
0
95
39
3
8
49
1.49
108554127--108554164
12
3.0
13
84
7
60
65
0
2
31
1.06
108554225--108554415
104
1.8
104
88
2
294
41
12
11
34
1.79
108560186--108560233
23
2.0
24
96
4
89
25
20
8
45
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108575350--108575405
24
2.3
25
84
9
71
50
0
3
46
1.19
108575350--108575405
25
2.3
24
84
9
69
50
0
3
46
1.19
108576217--108576444
114
2.0
115
87
0
332
30
12
16
39
1.86
108580091--108580184
23
4.1
23
85
0
134
47
4
25
22
1.69
108580418--108580531
58
2.0
58
96
0
210
21
22
14
40
1.90
108584655--108584748
23
4.1
23
83
5
127
48
4
24
22
1.68
108586974--108587131
79
2.0
79
100
0
316
39
17
12
30
1.87
108595281--108595318
20
2.0
20
84
5
51
31
7
0
60
1.25
108595381--108595456
27
2.7
27
69
18
66
39
1
2
56
1.21
108595417--108595461
22
2.1
22
87
4
65
33
0
4
62
1.15
108599671--108599725
25
2.2
25
96
0
101
58
21
9
10
1.60
108601677--108601752
23
3.3
23
68
17
66
28
2
11
56
1.49
108601661--108601755
47
2.0
47
97
0
181
27
4
11
56
1.53
108602814--108602841
14
2.0
14
100
0
56
57
7
7
28
1.52
108613459--108613488
5
6.0
5
96
0
51
16
40
0
43
1.48
108615059--108615104
6
8.0
6
92
4
69
0
17
10
71
1.13
108624895--108624929
15
2.3
15
85
0
52
11
34
0
54
1.37
108637298--108637324
5
5.4
5
100
0
54
59
0
0
40
0.98
108637291--108637324
15
2.3
14
90
10
50
58
0
0
41
0.98
108639110--108639176
35
1.9
35
90
0
107
32
20
13
32
1.92
108639156--108639281
35
3.6
34
84
4
162
34
22
14
28
1.93
108639120--108639289
35
4.9
34
81
4
160
33
21
14
30
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108639120--108639292
69
2.5
70
76
0
186
33
21
14
30
1.93
108640963--108641011
26
2.0
24
84
11
64
67
2
2
28
1.13
108647511--108647607
48
2.0
48
97
0
185
32
13
13
40
1.83
108650343--108650381
19
2.1
19
100
0
78
48
10
10
30
1.70
108656271--108656352
41
2.0
41
100
0
164
43
24
7
24
1.79
108658472--108658519
5
9.6
5
100
0
96
60
0
0
39
0.97
108659060--108659103
22
2.0
22
90
0
70
34
2
15
47
1.58
108663659--108663703
22
2.0
22
91
0
72
33
2
15
48
1.57
108669502--108669544
19
2.2
20
87
4
61
27
18
6
46
1.75
108673933--108673975
22
2.0
22
100
0
86
55
25
9
9
1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333

The End!