Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  291  of  333  ( 39894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96003385--96003409
3
8.3
3
100
0
50
32
0
0
68
0.90
96008079--96008110
16
2.0
16
100
0
64
43
6
18
31
1.75
96010379--96010645
46
5.6
46
84
7
277
20
23
14
41
1.88
96010379--96010659
96
3.0
96
91
3
428
20
23
13
41
1.88
96010427--96010659
46
5.0
46
87
6
324
21
24
13
40
1.89
96012721--96012760
17
2.4
16
87
4
53
0
32
0
67
0.91
96012789--96012834
16
2.8
17
83
6
58
13
13
0
73
1.09
96012785--96012822
10
3.7
10
86
13
51
5
15
0
78
0.91
96021752--96021793
19
2.2
19
87
8
59
28
0
9
61
1.27
96029323--96029448
20
6.2
20
69
9
58
17
21
22
38
1.93
96029317--96029356
20
2.0
21
85
5
55
20
22
17
40
1.92
96029383--96029498
39
3.0
39
90
0
178
13
24
25
37
1.92
96029416--96029480
21
3.2
21
72
12
73
12
24
23
40
1.89
96031167--96031222
24
2.2
26
93
6
98
46
8
3
41
1.52
96051028--96051124
49
2.1
45
84
11
124
48
11
9
30
1.70
96052610--96052646
18
2.1
18
100
0
74
27
29
16
27
1.97
96054092--96054176
23
3.6
23
69
10
64
58
2
9
29
1.42
96054122--96054203
33
2.3
38
83
12
102
52
0
13
34
1.41
96054188--96054229
19
2.3
18
87
4
57
69
2
2
26
1.13
96054604--96054670
13
5.8
13
69
25
60
7
0
55
37
1.28
96054593--96054676
22
3.8
22
93
3
134
9
0
55
34
1.32
96054751--96054795
15
2.9
15
86
3
54
6
4
37
51
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96055166--96056249
206
5.3
206
95
0
1891
28
22
19
29
1.98
96065529--96065613
23
3.6
23
72
10
73
58
2
9
29
1.42
96065906--96065938
13
2.5
13
95
0
57
9
15
12
63
1.51
96066040--96066110
22
3.2
22
90
4
108
9
0
54
35
1.33
96066051--96066130
13
6.8
13
70
21
59
11
0
51
37
1.38
96066213--96066257
15
2.9
15
86
3
54
6
4
37
51
1.49
96067096--96067153
29
2.0
29
89
0
89
37
8
24
29
1.85
96077056--96077124
27
2.5
27
75
11
68
57
4
4
33
1.38
96078653--96079084
176
2.4
176
81
3
490
27
22
20
29
1.99
96079019--96079127
44
2.5
43
80
8
112
30
25
21
22
1.99
96079025--96079441
205
2.0
205
99
0
825
29
22
18
30
1.97
96079259--96079514
44
5.7
44
69
13
153
28
24
17
29
1.98
96084257--96084300
21
2.1
21
86
0
61
54
6
9
29
1.58
96091706--96091774
27
2.5
27
77
11
77
59
4
4
31
1.37
96098882--96098911
14
2.1
14
93
0
51
43
33
0
23
1.54
96119229--96119268
17
2.4
18
80
16
50
52
0
0
47
1.00
96121830--96121864
16
2.1
16
89
5
52
34
2
5
57
1.37
96127570--96127613
18
2.5
17
81
7
52
54
0
2
43
1.12
96128576--96128619
22
2.0
21
83
16
54
50
2
4
43
1.35
96130226--96130268
21
2.0
21
95
0
77
23
16
27
32
1.96
96130328--96130378
22
2.3
22
89
0
75
64
0
29
5
1.17
96131351--96131392
22
2.0
22
86
9
61
7
26
0
66
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96133073--96133159
43
2.0
42
80
10
97
32
12
21
33
1.91
96135522--96135711
41
4.6
41
78
5
177
24
15
23
35
1.94
96135522--96135711
84
2.3
82
81
7
206
24
15
23
35
1.94
96136369--96136411
19
2.1
20
87
12
61
30
0
2
67
1.03
96137574--96137616
22
2.0
22
86
4
61
53
6
0
39
1.28
96137815--96137866
21
2.5
21
83
0
68
26
3
34
34
1.75
96138481--96138536
29
2.0
28
83
13
71
55
5
7
32
1.50
96144074--96144170
46
2.1
46
94
1
169
34
6
10
49
1.62
96148635--96148679
20
2.3
20
88
3
65
28
17
26
26
1.98
96148708--96148814
28
3.7
27
73
23
74
26
19
28
26
1.99
96148700--96148844
61
2.4
61
83
8
170
26
19
26
27
1.99
96151977--96152015
10
3.9
10
100
0
78
69
10
20
0
1.17
96160093--96160296
41
5.0
39
83
9
196
28
19
24
26
1.99
96160111--96160296
82
2.3
81
83
7
216
27
19
25
26
1.99
96162710--96162760
23
2.2
24
85
3
68
52
3
3
39
1.38
96163476--96163516
21
2.0
21
90
9
66
39
4
14
41
1.67
96170090--96170132
18
2.5
17
81
7
50
48
0
0
51
1.00
96174843--96174879
19
1.9
19
94
0
65
35
10
16
37
1.83
96184535--96184760
108
2.1
108
98
0
434
24
15
16
43
1.86
96189505--96189643
69
2.0
69
97
0
260
25
9
19
46
1.80
96190225--96190286
17
3.8
17
68
8
56
51
4
6
37
1.49
96190815--96190857
16
2.6
16
85
10
52
65
2
2
30
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96198816--96198851
12
3.0
12
87
0
54
75
0
25
0
0.81
96198805--96198858
22
2.4
23
85
11
69
68
0
31
0
0.90
96199202--96199242
21
2.0
21
100
0
82
34
9
21
34
1.87
96201891--96202228
140
2.4
140
93
1
572
26
7
7
58
1.52
96202207--96202249
13
3.4
13
74
6
52
18
6
4
69
1.29
96202187--96202334
46
3.1
48
74
14
135
21
7
3
67
1.30
96202246--96202324
16
4.9
16
75
9
79
17
8
3
69
1.30
96202634--96202667
11
3.1
11
95
0
59
64
11
0
23
1.26
96202940--96203005
27
2.5
26
73
7
69
13
30
34
21
1.92
96209814--96209933
56
2.1
56
98
0
231
45
9
23
22
1.81
96211059--96211243
40
4.7
40
80
7
191
24
21
27
25
1.99
96211112--96211276
79
2.1
79
83
6
201
26
20
27
25
1.99
96218240--96218424
40
4.7
40
81
5
198
24
22
27
25
2.00
96218240--96218424
79
2.3
81
83
7
218
24
22
27
25
2.00
96218293--96218457
79
2.1
79
84
6
210
26
21
27
24
1.99
96224953--96225035
42
2.0
42
85
0
112
21
19
25
33
1.97
96227437--96227541
54
2.0
54
92
3
178
22
13
4
59
1.53
96227801--96227940
7
19.6
7
71
12
63
42
36
0
20
1.53
96227831--96227968
7
19.3
7
75
7
62
44
32
0
23
1.54
96227818--96228017
21
9.3
22
68
13
58
44
33
0
22
1.57
96227828--96227968
14
9.9
14
70
10
70
43
33
0
22
1.54
96228376--96228477
40
2.6
38
76
14
91
37
17
17
27
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96228967--96229057
38
2.3
39
86
3
121
23
20
20
35
1.96
96232365--96232409
19
2.4
19
88
7
65
26
22
6
44
1.77
96238395--96238539
30
4.8
31
82
3
156
22
4
47
26
1.69
96239287--96239349
14
4.5
14
82
7
74
61
4
12
20
1.49
96239306--96239349
13
3.3
13
84
6
61
63
6
13
15
1.49
96239372--96239627
77
3.4
77
92
2
392
33
22
17
25
1.96
96239792--96239826
17
2.1
17
89
5
54
65
5
17
11
1.43
96239910--96240210
73
4.0
73
78
10
347
32
22
16
27
1.96
96240129--96240292
87
1.9
86
91
3
267
35
23
15
26
1.94
96240360--96240388
14
2.1
14
100
0
58
65
6
13
13
1.45
96240047--96240514
163
2.9
163
83
5
617
33
22
16
27
1.95
96240368--96240657
72
4.0
72
86
4
347
34
20
17
27
1.95
96248962--96248997
12
3.0
12
95
0
63
41
5
25
27
1.77
96250574--96250621
16
3.1
15
90
6
69
64
2
2
31
1.16
96250570--96250625
24
2.3
24
81
6
69
66
1
1
30
1.12
96250570--96250621
8
6.5
8
82
8
61
65
1
1
30
1.14
96250860--96250987
23
5.5
23
67
20
61
57
3
4
35
1.36
96250768--96250987
25
9.0
25
69
16
97
56
4
5
33
1.44
96251473--96251617
30
4.8
31
82
3
156
22
4
47
26
1.69
96258176--96258234
27
2.1
29
87
6
86
25
15
0
59
1.36
96259749--96259871
37
3.4
36
70
10
106
42
4
9
43
1.59
96259731--96259867
73
1.9
73
89
3
213
40
5
9
44
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96263996--96264062
31
2.2
30
78
7
73
53
2
1
41
1.25
96272200--96272240
21
2.0
21
90
0
64
29
21
29
19
1.98
96279311--96279337
12
2.2
12
100
0
54
7
11
48
33
1.67
96296130--96296225
43
2.2
43
88
0
138
20
14
33
31
1.93
96307623--96307696
30
2.5
30
82
4
87
52
21
4
21
1.63
96309198--96309232
17
2.1
17
88
0
52
51
0
14
34
1.42
96320418--96320489
36
2.0
36
100
0
144
52
13
11
22
1.72
96320759--96320805
21
2.2
21
81
7
60
61
0
4
34
1.15
96320758--96320804
22
2.2
22
80
3
60
63
0
4
31
1.13
96320847--96320885
18
2.2
19
86
9
55
58
0
5
35
1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333