Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  119  of  333  ( 39894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38406175--38406226
23
2.3
22
75
21
54
9
21
1
67
1.29
38406220--38406258
18
2.2
18
85
0
51
12
23
2
61
1.43
38418589--38418613
13
1.9
13
100
0
50
28
8
8
56
1.57
38421266--38421328
21
3.0
21
88
2
90
30
3
33
33
1.74
38430508--38430604
30
3.2
31
73
5
101
27
28
15
27
1.96
38432156--38432186
12
2.6
12
94
0
53
45
9
16
29
1.79
38434384--38434480
30
3.2
30
70
11
83
27
27
15
28
1.96
38438186--38438428
49
4.9
51
80
7
248
25
17
25
30
1.97
38444089--38444277
50
3.8
50
79
4
202
25
16
25
31
1.97
38444089--38444271
49
3.7
49
79
5
188
25
17
26
31
1.97
38462322--38462384
20
3.2
20
65
13
58
34
20
11
33
1.88
38462307--38462384
39
2.0
39
94
0
138
30
20
12
35
1.90
38465832--38465891
30
2.0
30
86
0
84
40
8
23
28
1.83
38481379--38481433
28
1.9
29
85
3
76
12
18
45
23
1.83
38483942--38483973
4
8.0
4
100
0
64
25
0
0
75
0.81
38487745--38487772
4
7.0
4
100
0
56
25
0
0
75
0.81
38489818--38489914
30
3.2
30
70
8
81
28
28
14
27
1.95
38490126--38490213
30
2.9
30
75
0
104
27
28
17
27
1.97
38489650--38490248
299
2.0
298
92
0
984
26
28
16
29
1.97
38491858--38491891
12
2.8
12
100
0
68
70
5
0
23
1.09
38492834--38492890
11
5.5
10
73
22
55
77
1
17
3
1.00
38492823--38492890
21
3.2
20
80
12
66
76
2
17
2
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38492834--38492890
5
11.0
5
77
17
55
77
1
17
3
1.00
38492834--38492890
16
3.7
14
80
17
60
77
1
17
3
1.00
38492938--38492968
12
2.6
12
100
0
62
45
12
16
25
1.83
38492971--38492995
12
2.1
12
100
0
50
76
0
16
8
1.02
38495249--38495345
30
3.2
30
76
2
106
27
27
16
27
1.97
38500039--38500090
23
2.3
22
75
21
54
9
23
1
65
1.32
38510909--38510942
15
2.3
15
89
0
50
23
14
17
44
1.86
38511578--38511637
21
3.0
20
78
7
68
20
23
18
38
1.93
38511584--38511622
20
1.9
20
94
5
69
17
20
23
38
1.93
38518280--38518438
27
5.9
27
80
11
166
34
20
24
20
1.96
38518280--38518441
54
3.0
54
89
2
229
34
20
24
19
1.96
38520398--38520494
30
3.2
30
76
2
106
27
16
27
27
1.97
38522657--38522687
12
2.6
12
100
0
62
25
16
12
45
1.83
38522733--38522802
16
4.4
16
75
12
65
4
17
4
74
1.14
38522752--38522803
25
2.0
26
82
10
63
5
15
3
75
1.14
38525358--38525454
30
3.2
30
75
5
99
27
17
28
25
1.98
38527159--38527218
15
4.0
15
80
8
68
11
6
16
65
1.46
38527159--38527218
30
2.0
30
87
6
86
11
6
16
65
1.46
38529368--38529542
50
3.5
49
82
7
183
26
17
27
29
1.97
38532479--38532519
12
3.5
11
87
9
55
75
2
19
2
1.03
38535413--38535487
39
1.9
39
100
0
150
40
5
24
30
1.77
38537313--38537360
14
3.4
14
85
0
60
43
6
31
18
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38542892--38542944
9
5.8
9
86
8
72
11
1
5
81
0.94
38543298--38543344
14
3.4
14
85
5
60
44
6
29
19
1.75
38547834--38547898
5
12.4
5
80
15
62
76
3
16
3
1.03
38547834--38547898
11
6.2
10
75
19
62
76
3
16
3
1.03
38547975--38547999
12
2.1
12
100
0
50
76
0
16
8
1.02
38547969--38548011
18
2.3
18
84
4
50
69
2
18
9
1.26
38547975--38548055
30
2.7
30
75
7
92
64
2
22
11
1.38
38548880--38548923
22
2.0
22
95
0
79
34
4
36
25
1.76
38554042--38554088
20
2.3
20
81
0
58
23
12
34
29
1.92
38555925--38555955
12
2.6
12
100
0
62
25
16
12
45
1.83
38556003--38556058
5
11.0
5
75
17
53
3
17
1
76
1.01
38556005--38556065
21
3.0
20
75
15
63
4
16
1
77
1.03
38556003--38556058
15
3.7
14
82
17
60
3
17
1
76
1.01
38556001--38556069
20
3.3
20
75
17
70
4
18
1
75
1.05
38568894--38568958
20
3.3
19
73
16
51
38
16
21
23
1.93
38571247--38571306
29
2.1
29
93
0
102
41
30
0
28
1.56
38571253--38571300
15
3.3
15
73
5
53
43
27
0
29
1.55
38571630--38571671
11
3.8
11
93
0
66
14
4
4
76
1.12
38579710--38579806
42
2.3
42
89
1
142
55
5
24
14
1.59
38579810--38579859
18
2.8
18
84
0
64
58
4
24
14
1.53
38579877--38579915
18
2.1
19
85
4
53
66
2
23
7
1.30
38580364--38580389
8
3.2
8
100
0
52
38
0
38
23
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38581510--38581606
30
3.2
30
68
8
81
27
16
28
26
1.97
38586800--38586829
11
2.7
11
100
0
60
80
0
6
13
0.91
38593762--38593809
15
3.3
15
73
5
53
31
0
25
43
1.55
38595406--38595706
40
7.7
40
87
7
386
25
26
20
26
1.99
38595406--38595706
79
3.8
79
88
5
398
25
26
20
26
1.99
38595406--38595706
117
2.6
119
85
6
391
25
26
20
26
1.99
38603377--38603597
40
5.7
40
82
9
253
24
27
22
25
2.00
38603377--38603597
76
2.8
79
84
7
263
24
27
22
25
2.00
38603377--38603597
116
1.9
117
82
11
285
24
27
22
25
2.00
38616918--38617011
18
5.4
18
92
3
131
36
25
9
28
1.87
38616918--38616998
9
9.0
9
70
0
54
34
27
9
28
1.89
38619369--38619457
21
4.1
21
84
5
90
53
10
23
12
1.68
38619369--38619437
21
3.3
21
87
2
95
55
8
24
11
1.64
38623600--38623628
14
2.1
14
100
0
58
51
6
13
27
1.66
38626393--38626432
13
2.8
15
85
14
66
65
0
0
35
0.93
38638979--38639061
27
3.3
26
88
9
120
8
24
34
32
1.85
38638979--38639061
25
3.3
25
90
6
116
8
24
34
32
1.85
38639031--38639282
43
6.0
42
85
7
322
11
25
31
31
1.91
38639031--38639282
84
3.0
83
85
11
331
11
25
31
31
1.91
38639031--38639282
127
2.0
123
85
9
341
11
25
31
31
1.91
38640677--38640852
56
3.1
56
99
0
343
44
9
23
22
1.81
38641981--38642164
40
4.7
40
81
8
207
24
21
27
26
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38642034--38642187
79
1.9
79
83
7
197
25
20
27
26
1.99
38648282--38648457
56
3.1
56
99
0
343
44
9
23
22
1.81
38649588--38649771
40
4.6
39
80
9
194
25
22
27
25
2.00
38649640--38649804
79
2.1
79
82
6
192
26
21
26
25
1.99
38654185--38654545
43
8.4
43
87
3
503
12
24
31
31
1.92
38654185--38654545
86
4.2
86
91
0
571
12
24
31
31
1.92
38654185--38654545
129
2.8
129
91
0
580
12
24
31
31
1.92
38654523--38654627
45
2.3
45
83
3
131
20
21
27
29
1.98
38668709--38668812
24
4.3
23
80
8
111
33
17
25
24
1.96
38668709--38668814
48
2.2
48
83
8
135
33
16
24
24
1.96
38669818--38670382
302
1.9
300
84
3
760
36
17
9
36
1.83
38671809--38671844
16
2.2
16
90
0
54
58
19
13
8
1.61
38672067--38672180
29
4.0
29
85
3
124
27
14
32
25
1.95
38674710--38674756
21
2.4
19
82
13
51
21
25
38
14
1.92
38678811--38679113
47
6.4
47
92
1
480
32
7
30
29
1.85
38678811--38679113
143
2.1
141
93
1
516
32
7
30
29
1.85
38680516--38680827
40
7.8
40
90
1
437
23
21
28
27
1.99
38683911--38684213
47
6.4
47
92
1
489
33
7
30
29
1.86
38683911--38684213
143
2.1
141
93
1
507
33
7
30
29
1.86
38684331--38684409
37
2.1
37
88
0
113
25
18
30
25
1.98
38689489--38689554
30
2.2
30
100
0
132
36
12
24
27
1.91
38697196--38697229
16
2.1
16
94
0
59
47
38
5
8
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38697866--38697895
11
2.7
11
100
0
60
6
36
0
56
1.26
38698708--38698825
29
4.1
28
83
6
123
26
14
33
26
1.94
38704293--38704346
21
2.6
21
87
0
72
20
31
12
35
1.90
38707243--38707414
93
1.8
93
92
2
292
29
29
20
20
1.98
38707235--38707409
46
3.8
45
80
10
210
29
29
20
21
1.98
38707240--38707429
46
4.1
45
74
11
143
30
28
20
21
1.98
38710817--38710889
32
2.3
32
83
4
85
32
21
16
28
1.95
38710985--38711051
22
3.0
22
74
10
64
32
22
23
20
1.98
38711193--38711314
41
3.0
41
87
3
165
27
27
21
23
1.99
38711575--38711708
27
4.9
27
76
7
101
28
10
17
44
1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333