genome.fa.s3.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  142  of  333  ( 39894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46537442--46537507	27	2.4	27	89	0	96	34	13	18	33	1.90
46537867--46537953	34	2.6	34	86	0	129	25	26	25	22	2.00
46544889--46545011	26	4.7	26	84	3	149	36	11	22	29	1.89
46544889--46545009	51	2.3	51	84	5	145	37	10	22	29	1.88
46546701--46546872	67	2.6	66	81	7	170	31	16	29	22	1.96
46546725--46546908	67	2.8	64	78	8	203	28	16	30	23	1.96
46549424--46549475	2	26.0	2	100	0	104	0	50	0	50	1.00
46550635--46550796	80	2.0	80	93	0	279	27	14	25	32	1.94
46557174--46557343	93	1.8	93	97	0	322	28	18	13	39	1.89
46558002--46558053	22	2.4	22	86	0	77	28	13	23	34	1.92
46560483--46560777	49	5.9	49	83	3	347	28	26	18	26	1.98
46561407--46561466	30	2.0	30	90	6	95	28	26	6	38	1.81
46564338--46564429	26	3.5	26	80	5	114	41	9	20	28	1.84
46570385--46570426	15	2.8	15	82	13	59	57	16	11	14	1.66
46574247--46574485	40	6.3	40	80	14	249	26	21	27	24	1.99
46574346--46574401	28	2.0	28	96	0	103	28	16	28	26	1.97
46574307--46574441	68	2.0	68	94	0	234	26	20	28	25	1.99
46574266--46574469	108	1.9	108	88	2	311	25	20	27	25	1.99
46578398--46578454	30	1.9	30	85	0	78	26	22	7	43	1.78
46580376--46580405	13	2.4	13	94	5	53	30	0	0	70	0.88
46582092--46582123	16	2.0	16	100	0	64	37	12	18	31	1.88
46583159--46583189	16	1.9	16	93	0	53	25	19	6	48	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46584163--46584214	21	2.5	21	69	12	52	30	0	9	59	1.29
46596175--46596272	27	3.5	28	88	5	128	25	13	28	32	1.93
46596203--46596287	27	3.0	27	87	5	98	30	11	24	32	1.91
46604170--46604267	27	3.5	28	88	5	128	25	13	28	32	1.93
46604198--46604282	27	3.0	27	87	5	98	30	11	24	32	1.91
46606334--46607856	765	2.0	767	92	1	2570	33	20	13	33	1.91
46609300--46609482	40	4.5	39	78	9	152	34	27	13	24	1.92
46618539--46618731	56	3.4	56	89	1	280	35	23	12	27	1.92
46634156--46634336	39	4.6	39	80	12	199	24	28	23	24	2.00
46634156--46634337	79	2.3	80	83	8	221	24	28	23	24	2.00
46641836--46642019	40	4.6	40	79	10	189	26	28	21	24	1.99
46641836--46642020	79	2.3	80	79	8	189	26	28	21	24	1.99
46645061--46645130	21	3.2	21	70	18	70	40	27	12	20	1.88
46652478--46652641	43	3.9	41	78	11	136	29	23	18	28	1.98
46658690--46658731	18	2.4	17	84	11	50	52	26	2	19	1.58
46660152--46660324	43	4.0	43	74	12	167	32	27	13	27	1.94
46664808--46664847	10	3.9	10	81	18	55	12	27	0	60	1.33
46666620--46666730	47	2.3	46	86	4	132	50	12	9	27	1.70
46666640--46666730	47	1.9	47	90	0	146	52	13	7	26	1.66
46669767--46669806	13	3.2	13	74	25	50	17	30	0	52	1.45
46677739--46677861	41	3.0	41	91	0	201	26	29	21	22	1.99
46678099--46678431	54	6.2	53	76	3	283	32	9	18	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46678099--46678439	81	4.2	80	76	6	287	32	9	18	39	1.84
46678099--46678439	27	12.7	27	78	4	251	32	9	18	39	1.84
46678425--46678504	27	3.0	27	86	0	115	27	21	17	33	1.96
46681767--46681819	16	3.3	16	97	0	97	37	18	5	37	1.75
46687881--46688103	39	5.7	40	85	8	257	25	27	21	25	2.00
46687881--46688103	79	2.8	79	84	9	244	25	27	21	25	2.00
46695831--46696092	39	6.6	39	87	6	320	24	27	22	25	2.00
46698293--46698442	6	24.3	6	67	17	76	48	14	16	21	1.81
46698302--46698442	31	4.5	31	84	3	167	48	14	17	20	1.81
46698562--46698642	27	3.0	26	83	5	99	38	23	20	17	1.93
46698801--46698860	22	2.7	22	81	0	66	33	21	26	18	1.96
46699207--46699616	27	15.3	27	85	1	518	25	19	18	36	1.94
46699600--46699830	27	8.7	26	74	8	164	29	10	20	39	1.86
46699208--46699673	54	8.7	53	80	9	355	26	18	17	37	1.93
46699223--46699757	27	19.9	26	77	10	171	26	16	18	37	1.92
46699604--46699809	80	2.6	80	85	6	249	30	10	18	40	1.85
46699718--46699779	26	2.3	27	83	2	72	30	11	17	40	1.85
46699547--46699830	53	5.3	53	76	6	218	28	11	20	39	1.88
46700786--46700854	31	2.3	31	94	2	122	46	11	13	28	1.78
46709460--46709485	13	2.0	13	100	0	52	23	15	7	53	1.67
46719735--46719782	22	2.2	22	85	7	62	14	16	31	37	1.89
46722012--46722291	39	7.2	39	81	6	309	32	17	30	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46722012--46722291	78	3.6	77	81	5	341	32	17	30	18	1.95
46737677--46737834	51	3.1	50	88	3	235	28	22	17	31	1.96
46739503--46739618	37	3.1	37	94	0	196	25	32	18	22	1.97
46739737--46740055	47	6.7	47	92	2	469	27	30	9	32	1.89
46747635--46747813	27	6.6	27	79	8	166	26	14	29	30	1.95
46747632--46747813	82	2.2	81	83	3	240	26	14	28	30	1.95
46755840--46756018	27	6.6	27	79	8	166	26	14	29	30	1.95
46755837--46756018	82	2.2	81	83	3	240	26	14	28	30	1.95
46760800--46760833	16	2.2	16	89	5	52	50	14	8	26	1.72
46764955--46765112	81	2.0	81	94	0	280	28	13	13	44	1.82
46766535--46766560	13	2.0	13	100	0	52	38	23	0	38	1.55
46770472--46770556	42	2.0	42	100	0	170	55	9	14	21	1.67
46774077--46774160	40	2.1	40	93	0	141	19	25	25	30	1.98
46786396--46786518	57	2.1	57	84	1	156	46	6	19	27	1.74
46787953--46788092	70	2.0	69	91	1	226	42	16	5	36	1.70
46790220--46790271	19	2.7	21	80	17	67	40	28	17	13	1.87
46791976--46792019	23	2.0	22	86	4	61	54	15	4	25	1.60
46792471--46792499	13	2.2	13	100	0	58	34	13	13	37	1.85
46792590--46792698	43	2.6	43	82	4	141	30	26	18	24	1.98
46795391--46795549	6	24.5	6	68	22	58	72	2	6	18	1.16
46795391--46795440	20	2.5	20	81	12	59	80	4	2	14	0.95
46795465--46795526	33	1.9	33	84	12	85	70	0	8	20	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46795472--46795549	20	3.8	20	73	15	70	73	0	5	21	1.03
46798244--46798372	50	2.5	51	88	5	199	36	16	21	25	1.94
46798348--46798558	31	6.8	31	93	2	334	27	20	27	25	1.99
46798576--46798740	47	3.7	46	80	9	153	28	15	26	29	1.96
46798670--46798784	42	2.7	43	87	4	171	30	13	26	28	1.94
46804752--46805014	40	6.6	40	88	3	316	26	27	20	24	1.99
46804946--46805023	40	1.9	41	82	10	97	26	28	21	23	1.99
46820919--46821040	43	2.8	44	81	5	158	24	15	28	31	1.96
46821354--46821553	38	5.3	38	90	0	292	21	21	25	32	1.98
46821546--46821669	45	2.8	45	87	2	178	20	23	27	28	1.99
46829808--46830196	38	10.3	38	92	0	645	20	21	25	32	1.98
46831591--46831724	45	3.1	44	82	9	177	25	17	29	28	1.97
46832021--46832168	38	3.9	38	92	1	244	20	22	26	30	1.98
46832028--46832191	38	4.3	38	91	0	238	21	21	26	31	1.98
46832184--46832313	45	2.9	45	87	2	190	23	23	26	26	2.00
46841249--46841286	20	1.9	20	94	0	67	42	23	2	31	1.68
46841435--46841487	24	2.2	24	83	12	65	35	18	24	20	1.95
46841447--46841500	24	2.2	24	83	6	65	33	24	24	18	1.97
46860012--46860037	13	2.0	13	100	0	52	46	0	7	46	1.31
46860018--46860092	33	2.3	34	84	9	102	49	13	6	30	1.67
46860598--46860686	36	2.4	37	80	14	112	11	14	2	71	1.22
46860734--46860796	22	3.0	20	76	17	63	41	0	6	52	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46860750--46860804	21	2.4	23	85	14	78	38	0	5	56	1.23
46860746--46860804	22	2.6	22	82	12	68	38	0	5	55	1.22
46860759--46860836	35	2.2	32	85	14	102	39	0	1	58	1.06
46860773--46860836	35	1.9	34	90	9	105	39	0	1	59	1.07
46860768--46860851	20	4.5	19	73	19	79	40	0	1	58	1.06
46860781--46860838	13	4.8	13	71	28	56	39	0	1	58	1.08
46860800--46860860	20	3.0	21	88	9	90	44	0	0	55	0.99
46860919--46860981	21	2.8	21	79	18	65	34	0	3	61	1.12
46861018--46861140	19	6.4	19	66	26	62	55	0	4	40	1.19
46861066--46861133	14	4.2	15	76	21	66	55	0	1	42	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333