genome.fa.s3.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  167  of  333  ( 39894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54905935--54905991	30	1.9	30	88	0	87	31	22	8	36	1.85
54913290--54913416	46	2.7	46	85	3	155	28	19	29	22	1.98
54914949--54915036	28	3.1	28	60	18	65	29	9	22	38	1.85
54914926--54915041	56	2.1	56	98	0	223	30	8	21	39	1.83
54915172--54915269	42	2.3	42	96	0	178	24	31	22	21	1.98
54916881--54916912	3	10.7	3	100	0	64	0	65	0	34	0.93
54918020--54918044	11	2.3	11	100	0	50	64	0	28	8	1.22
54920681--54920719	18	2.1	19	85	4	53	30	23	0	46	1.53
54920894--54920979	20	4.1	21	75	10	77	33	23	23	19	1.97
54925332--54925356	11	2.3	11	100	0	50	64	0	28	8	1.22
54929125--54929250	62	2.0	62	100	0	252	30	12	9	46	1.74
54931552--54931594	4	10.8	4	100	0	86	76	0	23	0	0.78
54944114--54944272	43	3.7	43	74	18	143	25	18	25	30	1.98
54944265--54944320	28	2.0	28	96	0	103	19	17	26	35	1.94
54945893--54945971	37	2.1	37	88	4	115	25	30	18	25	1.98
54946090--54946393	47	6.5	47	93	0	482	28	30	8	32	1.87
54955611--54955889	48	5.9	48	78	6	262	26	20	25	27	1.99
54963321--54963490	40	4.3	40	93	2	263	26	27	20	25	1.99
54963321--54963540	79	2.8	81	84	7	256	25	27	20	25	1.99
54964622--54964646	13	1.9	13	100	0	50	0	8	4	88	0.64
54971282--54971501	40	5.7	40	83	10	244	24	27	22	25	2.00
54993213--54993239	12	2.2	12	100	0	54	29	14	18	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54994330--54994571	50	4.9	50	83	4	258	27	22	28	21	1.99
54996950--54997130	84	2.2	84	90	0	290	35	18	7	38	1.79
55003230--55003277	24	2.0	25	91	4	80	20	27	4	47	1.68
55008317--55008483	40	4.3	37	90	6	210	25	28	21	25	1.99
55008317--55008483	75	2.2	80	88	5	245	25	28	21	25	1.99
55009611--55009635	13	1.9	13	100	0	50	0	8	4	88	0.64
55016279--55016458	40	4.6	40	80	11	187	25	27	21	26	1.99
55016279--55016458	79	2.3	81	81	12	205	25	27	21	26	1.99
55017539--55017565	14	1.9	14	100	0	54	0	7	3	88	0.61
55024794--55024850	29	2.0	28	80	12	64	35	5	24	35	1.78
55025874--55025905	12	2.6	13	90	9	50	18	6	25	50	1.70
55030560--55030671	20	5.6	20	97	2	208	14	31	29	25	1.94
55034258--55034306	20	2.5	20	100	0	98	44	12	10	32	1.75
55053743--55053796	24	2.3	24	84	9	67	59	3	0	37	1.15
55059996--55060037	3	14.0	3	100	0	84	66	0	0	33	0.92
55061684--55061745	6	10.3	6	71	25	51	50	3	1	45	1.27
55061684--55061745	11	5.2	12	71	24	51	50	3	1	45	1.27
55061684--55061747	17	3.6	18	78	19	71	50	3	1	45	1.27
55067042--55067074	17	1.9	18	88	11	52	45	0	12	42	1.41
55067427--55067466	20	2.0	20	95	0	71	35	7	10	47	1.65
55069541--55069715	48	3.6	48	90	0	269	28	31	15	24	1.95
55069494--55069715	96	2.3	96	85	1	284	28	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55071395--55071427	15	2.2	15	94	0	57	36	24	15	24	1.93
55095187--55095320	57	2.3	57	77	7	137	27	18	22	31	1.97
55099076--55099259	40	4.6	40	83	6	205	23	21	27	27	1.99
55099076--55099256	80	2.3	81	84	9	230	23	21	27	27	1.99
55106933--55107116	40	4.6	40	83	6	205	23	21	27	27	1.99
55106933--55107113	80	2.3	81	84	9	230	23	21	27	27	1.99
55111407--55111442	3	12.0	3	100	0	72	33	0	0	66	0.92
55112678--55112714	17	2.2	18	90	9	60	10	2	8	78	1.06
55112828--55112865	9	4.2	9	93	0	58	65	2	0	31	1.06
55113983--55114034	21	2.5	21	87	0	68	23	7	38	30	1.83
55114149--55114204	18	3.1	18	72	23	55	55	3	1	39	1.28
55118997--55119027	15	2.1	15	100	0	62	41	0	12	45	1.42
55120151--55120398	131	1.9	132	82	4	313	34	19	18	27	1.95
55132206--55132372	45	3.6	45	82	8	158	23	29	19	27	1.98
55132252--55132422	48	3.7	48	80	9	133	25	27	19	26	1.99
55137831--55138063	49	4.7	50	80	2	272	26	17	26	29	1.97
55141577--55141619	20	2.2	20	88	8	63	13	34	32	18	1.90
55143529--55143751	48	4.6	48	90	0	338	28	30	17	23	1.97
55156651--55156742	27	3.4	27	89	3	105	27	17	17	38	1.92
55156694--55156846	27	5.7	27	75	13	120	29	9	20	41	1.83
55156694--55156846	81	1.9	81	82	10	197	29	9	20	41	1.83
55162339--55162417	37	2.1	37	88	0	113	26	31	17	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55162538--55163017	192	2.5	192	94	0	820	28	30	9	31	1.88
55162536--55163017	47	10.1	47	91	2	739	28	30	9	31	1.88
55174861--55174932	31	2.3	31	85	4	92	50	13	16	19	1.79
55175419--55175934	27	19.2	27	86	0	613	41	7	21	29	1.81
55175419--55175934	161	3.2	159	86	2	701	41	7	21	29	1.81
55175924--55175999	26	2.9	26	84	7	100	28	11	21	38	1.89
55176010--55176068	26	2.2	27	82	8	68	28	8	20	42	1.81
55176242--55176303	28	2.2	28	91	2	99	12	41	24	20	1.87
55178584--55178758	46	3.8	46	76	13	178	30	30	18	20	1.97
55178592--55178762	93	1.8	93	89	0	270	29	30	19	20	1.97
55181766--55181883	43	2.8	43	78	6	132	29	23	16	29	1.97
55183162--55183273	55	2.0	55	96	0	206	25	24	16	33	1.96
55185403--55185440	19	2.0	20	85	15	53	39	23	0	36	1.55
55185671--55185840	93	1.8	93	94	0	304	28	28	21	21	1.99
55185665--55185837	46	3.7	46	76	15	194	28	27	21	21	1.99
55186263--55186322	30	2.0	30	86	0	84	33	25	5	36	1.78
55188057--55188165	18	6.1	18	79	5	105	35	15	15	33	1.89
55188057--55188151	36	2.6	36	84	0	118	37	15	13	32	1.87
55189105--55189145	12	3.5	11	90	6	55	26	17	0	56	1.41
55189532--55189572	21	1.9	22	95	5	75	0	34	0	65	0.93
55193820--55194130	47	6.6	47	94	1	514	28	30	8	33	1.86
55193870--55193948	25	3.3	25	66	16	76	31	29	5	34	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55193820--55194130	143	2.2	141	92	1	514	28	30	8	33	1.86
55199992--55200038	21	2.4	19	82	10	58	46	23	2	27	1.63
55201526--55201609	28	3.0	28	84	3	105	27	29	14	28	1.95
55208682--55208891	40	5.3	39	89	4	242	25	21	27	25	1.99
55208629--55208891	120	2.2	120	82	4	309	25	21	27	25	1.99
55208630--55208926	80	3.7	80	81	6	230	26	21	27	24	1.99
55216058--55216267	40	5.3	39	89	4	242	25	21	27	25	1.99
55216005--55216267	120	2.2	120	82	4	309	25	21	27	25	1.99
55216006--55216302	80	3.7	80	81	6	230	26	21	27	24	1.99
55242949--55242989	21	2.0	21	85	9	57	21	9	19	48	1.77
55242958--55243002	21	2.1	21	84	12	56	26	11	20	42	1.85
55248310--55248349	20	2.0	21	90	5	64	17	15	2	65	1.39
55250281--55250432	27	5.6	27	93	4	243	30	28	13	26	1.94
55250281--55250432	55	2.8	55	94	2	261	30	28	13	26	1.94
55258450--55258628	28	6.4	28	93	0	288	33	27	12	26	1.92
55263060--55263271	68	3.1	68	75	14	158	21	26	17	33	1.96
55271442--55271664	40	5.6	40	85	3	236	26	27	21	24	1.99
55271596--55271673	40	1.9	41	82	10	97	26	28	21	23	1.99
55276117--55276177	24	2.5	24	81	5	70	19	14	29	36	1.92
55286598--55286681	28	3.2	28	65	25	83	23	16	29	29	1.96
55286550--55286774	49	4.5	49	88	2	297	24	17	28	29	1.97
55286543--55286782	99	2.4	100	85	2	313	24	18	28	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55289754--55289813	30	2.0	30	87	6	86	11	16	16	55	1.70
55289754--55289813	15	4.0	15	76	6	59	11	16	16	55	1.70
55291491--55291715	49	4.5	49	88	2	306	25	18	27	28	1.98
55291484--55291723	99	2.4	100	85	2	322	24	19	27	28	1.98
55293772--55293855	41	2.0	42	84	6	109	27	17	21	33	1.96
55293790--55293914	37	3.2	39	77	7	128	24	17	24	33	1.96
55293790--55293923	40	3.4	39	77	7	128	24	16	25	33	1.96
55299355--55299539	79	2.3	82	83	7	229	24	27	22	24	2.00
55299336--55299539	40	5.1	40	81	8	229	24	27	22	25	2.00
55307271--55307455	79	2.3	82	83	7	229	24	27	22	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333