Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  323  of  333  ( 39894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104889985--104890118
35
3.6
37
81
9
159
35
23
10
31
1.88
104890062--104890129
35
1.9
35
87
0
100
35
26
8
29
1.87
104889986--104890129
75
1.9
75
81
2
173
34
22
11
31
1.89
104891964--104892002
13
3.0
13
92
7
62
23
25
30
20
1.98
104896565--104896637
28
2.6
28
78
10
85
46
1
4
47
1.30
104897672--104897782
54
2.1
54
98
0
213
43
13
12
30
1.81
104899628--104899737
56
2.0
56
84
10
145
26
15
26
31
1.96
104902481--104902587
28
3.8
28
93
0
169
33
10
26
29
1.89
104904561--104904770
28
7.4
28
76
3
213
15
19
35
29
1.93
104904559--104904801
57
4.2
57
95
1
407
16
18
35
29
1.93
104906821--104906992
93
1.8
93
92
0
290
28
29
20
20
1.98
104906814--104906989
46
3.8
46
78
10
187
29
29
20
20
1.98
104906822--104907008
46
4.0
46
70
19
120
28
29
20
21
1.98
104912495--104912601
28
3.8
28
88
0
151
35
10
23
30
1.88
104925122--104925175
7
8.1
7
82
12
51
64
1
18
14
1.37
104925117--104925147
14
2.2
14
94
0
53
64
6
12
16
1.47
104925124--104925174
25
2.0
25
85
7
68
68
1
17
11
1.29
104929667--104929709
22
2.0
21
82
13
52
30
2
4
62
1.28
104931096--104931315
110
2.0
110
100
0
440
35
15
20
29
1.93
104934996--104935063
30
2.2
31
81
2
75
47
10
7
35
1.66
104939621--104939674
28
1.9
28
100
0
108
37
11
9
42
1.73
104950034--104950058
13
1.9
13
100
0
50
0
8
0
92
0.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104959724--104959748
12
2.1
12
100
0
50
24
36
24
16
1.94
104959909--104959987
9
8.8
9
97
0
131
37
29
10
22
1.87
104967107--104967153
18
2.6
17
83
10
58
53
0
0
46
1.00
104970311--104970359
17
2.9
17
77
17
57
67
0
6
26
1.14
104970670--104970738
30
2.4
29
81
16
81
59
0
0
40
0.97
104972451--104972501
24
2.1
25
85
3
68
56
7
0
35
1.28
104972574--104972613
21
1.9
21
89
0
62
57
2
2
37
1.26
104973560--104973614
23
2.7
20
80
11
58
16
3
3
76
1.07
104974829--104974993
79
2.1
78
87
3
244
36
19
16
27
1.94
104975002--104975230
74
3.1
74
88
3
320
34
19
15
31
1.93
104975241--104975445
73
2.8
72
90
2
320
31
24
16
27
1.96
104984820--104984979
53
3.1
52
75
15
161
30
11
21
36
1.89
104984772--104984993
47
4.6
47
77
8
187
28
13
23
34
1.92
104987512--104987549
20
1.9
20
84
10
51
71
5
2
21
1.19
104995262--104995341
40
2.0
40
97
0
151
33
8
25
32
1.86
104997689--104997785
3
31.3
3
69
17
56
31
6
3
58
1.38
104997689--104997785
12
7.5
13
70
21
62
31
6
3
58
1.38
105000576--105000729
52
2.9
53
79
10
174
25
16
27
29
1.97
105012001--105012050
17
2.7
20
78
18
70
10
0
44
46
1.37
105016639--105016688
17
2.7
20
78
18
70
10
0
44
46
1.37
105021930--105021954
13
1.9
13
100
0
50
44
0
0
56
0.99
105022461--105022523
20
3.2
20
69
13
58
44
1
3
50
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105022463--105022523
21
3.0
21
67
13
56
42
1
3
52
1.27
105025067--105025112
3
15.3
3
86
0
65
34
4
0
60
1.16
105025798--105025837
16
2.4
16
87
4
53
35
2
5
57
1.34
105025987--105026033
19
2.2
21
82
14
53
31
4
10
53
1.55
105026007--105026040
15
2.3
15
89
0
50
32
0
14
52
1.42
105026124--105026180
24
2.5
24
91
5
91
31
3
5
59
1.36
105026134--105026177
13
3.5
13
75
12
56
31
2
6
59
1.36
105030028--105030121
46
2.0
46
97
0
179
29
10
12
46
1.76
105040042--105040159
38
3.1
37
61
17
89
24
14
15
45
1.83
105040036--105040187
76
2.0
76
100
0
304
25
14
14
46
1.82
105047522--105047576
24
2.2
25
93
6
94
54
3
0
41
1.18
105047518--105047579
24
2.4
26
86
13
92
56
3
0
40
1.15
105047538--105047597
31
1.9
32
86
3
86
56
5
0
38
1.21
105051409--105051455
17
2.8
18
78
18
57
25
2
0
72
0.96
105069427--105069454
1
28.0
1
100
0
56
100
0
0
0
0.00
105072660--105072687
4
7.0
4
100
0
56
75
0
25
0
0.81
105073773--105073832
30
2.0
30
90
0
93
41
16
23
18
1.90
105084004--105084030
14
1.9
14
100
0
54
33
7
0
59
1.25
105091999--105092065
27
2.4
28
85
9
93
55
0
0
44
0.99
105091987--105092065
27
3.0
26
83
12
90
55
1
0
43
1.07
105092010--105092047
18
2.1
19
85
5
51
57
0
0
42
0.98
105094633--105094687
27
2.0
27
96
0
101
38
7
0
54
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105095519--105095566
23
2.1
22
81
11
53
75
4
8
12
1.18
105097681--105097722
16
2.5
17
81
14
52
54
2
2
40
1.26
105100383--105100412
3
10.0
3
100
0
60
66
0
0
33
0.92
105100822--105100859
15
2.5
15
83
8
51
26
5
0
68
1.11
105103438--105103489
23
2.3
22
75
21
54
9
23
1
65
1.32
105112599--105112662
29
2.2
28
86
2
83
28
10
14
46
1.77
105113776--105113937
51
3.0
51
83
11
216
29
22
15
33
1.94
105113830--105113939
58
1.9
58
92
0
184
27
21
17
33
1.96
105114841--105114928
31
2.6
34
78
14
101
38
0
0
61
0.96
105114869--105114915
15
3.1
15
77
17
51
36
0
0
63
0.94
105130338--105130362
13
1.9
13
100
0
50
44
0
0
56
0.99
105132087--105132144
29
2.0
29
83
6
73
43
0
12
44
1.41
105133487--105133535
10
4.9
10
78
9
55
40
0
2
57
1.10
105133483--105133539
20
3.1
18
85
14
64
36
0
1
61
1.07
105133506--105133550
19
2.3
20
92
3
74
44
0
0
55
0.99
105133515--105133570
19
2.9
19
81
5
60
42
0
3
53
1.18
105148470--105148496
6
4.5
6
100
0
54
14
0
0
85
0.61
105158973--105159034
25
2.5
25
100
0
124
29
24
17
29
1.97
105159193--105159727
277
1.9
277
99
0
1061
29
15
22
33
1.94
105159944--105160215
135
2.0
135
97
0
517
37
16
14
30
1.89
105160195--105160526
167
2.0
169
94
2
589
39
16
16
27
1.90
105165936--105165983
24
1.9
26
83
8
64
25
10
6
58
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105168206--105168256
22
2.3
22
83
6
59
41
23
1
33
1.66
105175597--105175629
16
2.1
16
100
0
66
33
12
0
54
1.37
105187717--105187756
21
1.9
21
89
0
62
12
35
7
45
1.70
105187727--105187755
15
1.9
15
100
0
58
13
34
6
44
1.71
105191608--105191632
6
4.2
6
100
0
50
20
0
0
80
0.72
105198375--105198416
22
1.9
22
85
0
57
61
4
0
33
1.17
105200506--105200562
18
3.1
19
80
10
64
54
5
1
38
1.33
105200727--105200757
16
1.9
16
93
0
53
38
6
6
48
1.55
105205215--105205277
31
2.0
31
87
6
92
47
7
6
38
1.58
105206786--105206823
18
2.0
20
85
10
53
31
0
5
63
1.17
105210491--105210520
7
4.3
7
100
0
60
46
13
13
26
1.80
105212236--105212308
29
2.5
28
82
12
78
35
1
6
56
1.35
105212247--105212308
29
2.1
30
85
11
85
35
0
8
56
1.29
105212538--105212584
23
2.1
22
84
7
60
29
0
4
65
1.11
105213961--105214025
8
8.6
8
75
13
57
69
0
0
30
0.89
105213961--105214016
23
2.6
21
82
5
67
69
0
0
30
0.89
105213956--105213989
15
2.3
15
95
5
61
70
0
0
29
0.87
105213953--105214025
37
2.0
36
84
7
94
69
0
0
30
0.88
105219822--105220173
52
7.0
52
85
8
467
34
14
22
28
1.93
105219874--105220180
98
3.1
98
91
1
429
34
14
22
28
1.93
105219808--105220173
150
2.5
144
92
5
579
34
14
22
28
1.94
105220144--105220363
37
6.0
37
94
1
372
37
16
21
24
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105222811--105222857
24
2.0
24
87
4
69
63
6
2
27
1.30
105222996--105223020
5
5.0
5
100
0
50
0
20
0
80
0.72
105232335--105232369
18
2.1
17
89
10
54
45
0
17
37
1.48
105236786--105236819
18
1.9
17
88
5
50
44
0
2
52
1.16
105237522--105237546
6
4.2
6
100
0
50
32
0
0
68
0.90
105238454--105238500
24
2.0
24
83
8
60
48
17
0
34
1.47
105246881--105246915
17
2.1
17
89
10
54
37
0
17
45
1.48
105247006--105247047
22
1.9
22
85
9
59
35
7
4
52
1.50
105247255--105247302
24
2.0
24
100
0
96
25
20
25
29
1.99
105253985--105254178
38
5.1
38
92
0
307
17
21
25
36
1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333