genome.fa.s3.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  151  of  333  ( 39894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49416551--49416710	52	3.1	52	95	0	284	33	8	23	35	1.84
49418325--49418462	27	5.1	27	80	8	138	18	21	22	36	1.95
49418325--49418462	54	2.6	54	90	2	215	18	21	22	36	1.95
49429065--49429160	27	3.6	27	89	0	138	34	18	18	28	1.95
49429145--49429401	27	9.6	27	79	7	114	40	19	8	31	1.81
49429065--49429189	54	2.3	53	79	6	135	34	19	16	29	1.94
49429145--49429410	54	4.9	55	76	9	203	39	19	8	32	1.82
49429145--49429410	81	3.3	81	77	9	224	39	19	8	32	1.82
49429224--49429403	27	6.7	27	84	8	163	41	20	7	30	1.80
49429303--49429460	27	5.8	28	75	14	100	40	17	10	31	1.84
49429724--49429802	41	1.9	41	94	0	140	22	21	29	26	1.99
49443618--49443650	14	2.2	16	89	10	52	33	6	6	54	1.50
49459732--49459761	13	2.3	13	94	0	51	20	33	33	13	1.91
49466856--49466903	25	1.9	25	91	0	78	12	25	12	50	1.75
49466882--49466911	15	2.0	15	100	0	60	20	20	6	53	1.67
49470963--49471351	47	8.2	47	90	2	589	31	8	30	29	1.86
49470963--49471351	96	4.1	94	92	1	607	31	8	30	29	1.86
49470963--49471351	143	2.7	143	90	2	597	31	8	30	29	1.86
49471469--49471547	37	2.1	37	90	0	122	24	18	31	25	1.98
49476591--49476707	43	2.7	43	84	5	155	29	23	14	33	1.94
49485094--49485154	30	2.0	30	83	0	77	31	22	8	37	1.84
49486861--49487032	59	2.9	59	90	0	254	16	22	22	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49486861--49487057	39	5.0	40	84	2	245	16	22	21	38	1.93
49486866--49487066	79	2.5	79	86	2	269	17	22	21	37	1.94
49486861--49487032	20	8.7	20	87	2	240	16	22	22	39	1.92
49487718--49487795	24	3.2	24	89	3	113	37	5	37	20	1.75
49489005--49489056	27	2.0	26	85	7	70	38	17	11	32	1.85
49489177--49489282	27	4.0	25	80	11	113	17	22	20	38	1.93
49489179--49489284	54	2.0	53	88	1	158	17	23	19	38	1.93
49495209--49495282	24	3.0	24	90	2	121	36	5	37	20	1.76
49496665--49496778	27	4.2	27	89	4	151	16	23	22	36	1.94
49496677--49496798	27	4.5	26	87	5	100	18	24	18	38	1.93
49496685--49496798	54	2.1	53	82	4	131	17	23	19	39	1.92
49500723--49500757	16	2.2	16	90	10	54	54	17	20	8	1.68
49501478--49501655	20	8.9	20	80	3	180	17	21	22	38	1.93
49501478--49501648	39	4.3	39	81	3	153	17	21	22	38	1.93
49501485--49501655	59	2.9	59	80	3	155	16	22	23	36	1.94
49507062--49507108	24	2.0	24	87	8	69	25	27	19	27	1.99
49512676--49513269	47	12.6	47	92	1	936	31	8	30	29	1.86
49513390--49513465	37	2.1	37	89	0	116	22	18	32	26	1.97
49515318--49515463	43	3.4	43	98	0	283	23	15	34	26	1.94
49515445--49515518	29	2.6	29	86	4	96	24	16	33	25	1.95
49515798--49516065	40	6.7	40	82	6	242	26	20	28	23	1.99
49515798--49516065	120	2.2	120	79	7	276	26	20	28	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49515999--49516075	40	1.9	40	86	0	109	22	22	29	25	1.99
49519505--49520098	47	12.6	47	93	1	929	31	8	30	29	1.87
49520219--49520294	37	2.1	37	87	0	107	23	18	31	26	1.97
49522749--49523015	48	5.6	50	76	14	194	26	27	18	27	1.98
49522749--49523157	46	8.7	47	70	16	201	24	27	18	28	1.98
49524609--49524654	21	2.2	20	84	3	56	21	34	15	28	1.94
49526767--49526934	43	3.9	44	79	4	182	29	14	23	32	1.94
49529823--49530226	47	8.6	47	92	2	639	32	9	29	28	1.88
49529823--49530226	143	2.9	141	91	2	639	32	9	29	28	1.88
49529823--49530226	190	2.1	188	91	1	639	32	9	29	28	1.88
49531661--49532083	40	10.6	40	89	3	600	24	21	27	26	1.99
49536030--49536480	47	9.6	47	93	1	715	32	8	29	29	1.87
49539118--49539168	20	2.7	19	82	14	54	41	0	21	37	1.54
49544595--49544915	48	6.7	48	79	5	317	23	30	19	27	1.98
49544601--49544927	144	2.3	144	86	3	435	24	30	18	26	1.98
49545651--49545729	31	2.5	31	93	2	131	27	27	17	26	1.98
49545951--49546122	26	6.7	26	86	0	231	26	21	22	29	1.99
49545953--49546122	52	3.3	51	90	5	272	27	21	22	28	1.99
49546915--49547001	27	3.2	27	86	3	104	19	25	18	36	1.94
49547119--49547365	27	9.2	25	71	17	108	29	7	21	40	1.81
49547146--49547351	54	3.8	53	79	6	227	29	7	20	42	1.79
49547144--49547350	81	2.6	81	88	2	292	29	7	21	41	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49547367--49547436	23	2.8	25	83	16	92	41	12	18	27	1.87
49547343--49547443	28	3.8	28	72	15	97	41	9	20	27	1.84
49549692--49549952	40	6.6	40	92	1	393	26	23	27	22	2.00
49559062--49559444	193	2.0	192	94	1	678	30	23	22	22	1.99
49564058--49564127	21	3.2	21	68	18	61	17	14	27	41	1.87
49564043--49564140	45	2.2	44	90	3	153	21	13	26	38	1.90
49564606--49564679	36	2.1	36	100	0	148	16	32	5	45	1.70
49568255--49568412	68	2.3	68	77	11	160	20	28	15	34	1.94
49570897--49570937	21	2.0	21	85	9	57	29	2	12	56	1.49
49576258--49576298	22	1.9	22	95	5	75	17	24	43	14	1.86
49577513--49577671	46	3.5	45	83	9	164	23	30	18	27	1.98
49585645--49585685	20	2.1	20	86	4	57	39	2	9	48	1.49
49585756--49585790	18	2.0	18	88	5	54	28	14	20	37	1.91
49586862--49586958	29	3.4	28	87	9	126	27	27	16	27	1.97
49595327--49595392	18	3.6	17	76	15	62	13	40	4	40	1.65
49601195--49601248	27	2.0	27	85	0	72	38	14	5	40	1.70
49601546--49601602	30	1.9	30	88	0	87	33	21	5	40	1.75
49607019--49607072	27	2.0	27	85	0	72	38	14	5	40	1.70
49607370--49607426	30	1.9	30	92	0	96	31	21	7	40	1.80
49612366--49612513	51	3.0	50	82	4	165	31	25	18	24	1.98
49612385--49612513	49	2.6	51	82	6	156	31	26	17	24	1.97
49612766--49612822	27	2.1	27	83	6	71	40	14	5	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49613100--49613319	46	4.7	47	79	8	218	30	18	28	22	1.97
49613105--49613319	93	2.3	94	82	10	255	30	19	27	22	1.98
49613067--49613320	47	5.5	45	78	10	219	29	18	27	23	1.98
49613067--49613320	140	1.8	140	81	5	316	29	18	27	23	1.98
49617082--49617264	39	4.7	39	90	2	296	29	19	26	24	1.98
49617082--49617264	78	2.3	78	95	0	330	29	19	26	24	1.98
49626952--49627155	96	2.1	96	94	1	304	33	7	27	30	1.85
49626952--49627155	47	4.3	47	91	2	336	33	7	27	30	1.85
49627086--49627223	68	2.0	68	97	0	258	32	5	30	31	1.81
49627133--49627176	21	2.1	21	100	0	88	34	0	31	34	1.58
49627154--49627279	47	2.7	48	87	3	175	31	7	31	28	1.86
49627040--49627270	115	2.0	116	89	3	358	32	7	30	29	1.86
49629454--49629636	78	2.3	78	97	0	339	29	20	26	23	1.99
49629454--49629636	39	4.7	39	91	0	303	29	20	26	23	1.99
49634241--49634361	39	3.1	39	93	0	206	22	31	23	22	1.98
49636256--49636473	40	5.5	40	82	3	246	24	22	27	25	2.00
49642153--49642228	38	2.0	38	94	0	134	31	21	15	31	1.94
49644444--49644561	42	2.7	43	87	6	159	24	16	27	30	1.97
49655359--49655501	43	3.3	43	86	4	173	32	15	23	28	1.95
49658449--49658501	21	2.6	21	85	8	65	60	7	1	30	1.35
49658469--49658511	21	2.0	21	86	0	59	58	6	2	32	1.38
49658484--49658535	17	2.9	17	88	5	68	63	3	5	26	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49658538--49658599	32	1.9	32	86	0	88	62	1	1	33	1.14
49658569--49658682	43	2.6	45	82	10	128	64	0	2	32	1.14
49658618--49658665	17	2.9	15	77	17	51	64	0	4	31	1.12
49659018--49659076	30	1.9	31	83	10	77	42	8	6	42	1.61
49659313--49659384	28	2.6	28	80	8	78	37	8	1	52	1.40
49659368--49659412	19	2.3	20	84	3	65	42	2	2	53	1.25
49659470--49659534	26	2.5	26	80	7	78	27	4	1	66	1.20
49659470--49659543	17	4.3	17	75	16	71	28	4	2	64	1.25
49659470--49659543	25	2.9	24	73	18	60	28	4	2	64	1.25
49659543--49659601	30	2.0	30	100	0	118	42	13	10	33	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333