Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  292  of  333  ( 39894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96333952--96334007
27
2.0
28
83
10
71
46
16
14
23
1.83
96341243--96341297
25
2.2
26
78
15
62
40
0
7
52
1.29
96349500--96349525
6
4.3
6
100
0
52
65
0
0
34
0.93
96354255--96354301
19
2.5
20
75
10
53
57
2
0
40
1.11
96361643--96361668
12
2.2
12
100
0
52
53
7
23
15
1.67
96365217--96365267
4
12.8
4
85
10
61
23
0
1
74
0.92
96365217--96365282
23
3.0
22
78
8
71
25
1
1
71
1.04
96377700--96377739
21
1.9
21
84
0
53
45
5
5
45
1.47
96385435--96385525
40
2.3
38
81
7
128
35
34
17
13
1.89
96385447--96385523
40
1.9
40
97
0
145
36
35
15
12
1.86
96392456--96392534
40
2.0
40
89
0
122
37
32
15
13
1.87
96393236--96393346
56
2.0
56
89
0
168
27
24
16
31
1.96
96394640--96394787
23
6.6
22
75
10
113
41
35
4
18
1.69
96394657--96394764
48
2.4
43
84
9
128
41
37
3
17
1.67
96400722--96400877
42
3.7
42
77
16
169
30
26
18
24
1.98
96402335--96402419
32
2.7
32
96
1
154
34
3
0
62
1.12
96402336--96402420
16
5.4
16
74
12
86
32
3
0
63
1.11
96402383--96402427
24
1.9
23
86
4
63
33
4
0
62
1.15
96402343--96402422
9
8.8
9
70
22
60
33
2
0
63
1.08
96411326--96411366
19
2.1
20
90
4
66
51
0
4
43
1.23
96411542--96411586
19
2.4
19
85
3
56
66
0
4
28
1.11
96412777--96412912
63
2.2
62
81
4
157
25
31
19
23
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96413406--96413462
6
9.8
6
81
14
57
77
0
22
0
0.77
96413406--96413462
16
3.7
16
81
4
73
77
0
22
0
0.77
96413409--96413459
3
16.7
3
76
11
50
74
0
25
0
0.82
96414404--96414499
28
3.3
29
79
10
88
25
6
1
67
1.20
96417164--96417202
17
2.4
16
86
4
51
33
2
0
64
1.08
96417590--96417638
22
2.2
22
85
3
62
24
10
2
63
1.37
96417596--96417638
22
1.9
23
90
4
70
27
9
0
62
1.25
96421281--96421326
19
2.4
18
82
10
56
32
19
8
39
1.82
96430746--96430789
21
2.1
21
83
8
54
29
25
20
25
1.99
96435412--96435515
26
4.0
26
91
0
163
36
23
6
33
1.81
96441839--96442004
82
2.0
82
95
0
296
36
7
10
45
1.67
96446834--96446869
18
2.0
18
100
0
72
33
22
0
44
1.53
96448799--96448869
35
2.0
35
97
0
133
26
14
12
46
1.80
96451519--96451557
19
2.2
19
86
9
55
41
2
0
56
1.13
96452863--96453018
52
3.0
52
77
10
174
26
16
26
30
1.97
96458723--96458764
20
2.1
20
100
0
84
35
4
23
35
1.76
96459738--96459937
52
3.9
52
78
10
182
26
18
26
29
1.98
96459857--96459947
46
2.0
46
82
4
112
25
16
27
30
1.97
96471968--96472174
107
2.0
105
85
1
279
26
11
15
46
1.80
96472398--96472457
31
2.0
30
87
9
86
18
15
11
55
1.70
96472818--96472903
22
4.2
19
73
16
73
59
8
3
29
1.43
96472818--96472903
21
4.2
21
73
12
63
59
8
3
29
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96475329--96475509
40
4.6
40
91
1
267
19
27
24
28
1.99
96479847--96479871
4
6.2
4
100
0
50
52
0
0
48
1.00
96480399--96480466
32
2.2
32
83
2
84
45
4
1
48
1.31
96480968--96481003
9
4.0
9
96
0
63
69
8
0
22
1.15
96493974--96494105
48
2.7
50
85
4
162
25
31
17
25
1.97
96493969--96494287
48
6.8
45
70
17
147
23
29
20
27
1.98
96501065--96501103
20
1.9
21
84
5
53
15
2
7
74
1.15
96505111--96505140
14
2.1
14
93
0
51
46
36
0
16
1.47
96514827--96514890
27
2.4
27
97
0
119
28
39
7
25
1.83
96525987--96526014
11
2.5
11
100
0
56
82
0
0
17
0.68
96531652--96531695
10
4.5
10
80
5
54
81
0
0
18
0.68
96533705--96533743
12
3.2
12
85
10
53
71
0
25
2
0.98
96533700--96533743
22
1.9
22
90
9
70
72
0
25
2
0.96
96545367--96545415
20
2.7
18
77
22
57
51
4
2
42
1.32
96545400--96545469
32
2.3
30
83
11
88
54
2
2
40
1.30
96547470--96547545
26
2.9
27
82
4
100
19
28
15
35
1.93
96552958--96553002
23
2.0
23
82
8
56
37
22
11
28
1.88
96558854--96558902
21
2.3
21
75
0
53
40
6
0
53
1.26
96559107--96559146
20
2.0
20
95
0
71
50
7
5
37
1.53
96561469--96561569
30
3.1
30
63
26
71
55
3
6
33
1.45
96561432--96561573
67
2.1
68
97
2
270
54
4
7
34
1.47
96561869--96561926
22
2.7
21
76
10
53
43
17
3
36
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96561905--96561995
19
4.9
19
84
8
125
39
16
9
34
1.82
96561917--96561985
35
1.9
36
91
2
113
40
15
10
33
1.81
96566089--96566153
32
2.0
34
84
6
89
32
24
16
26
1.96
96567998--96568105
26
4.2
26
90
0
180
37
25
6
31
1.81
96570471--96570501
16
1.9
16
93
0
53
41
9
3
45
1.53
96570976--96571036
30
2.0
30
100
0
122
44
9
9
36
1.71
96572861--96572918
25
2.3
25
84
0
71
36
20
18
24
1.95
96581819--96581856
17
2.2
18
90
4
60
39
0
5
55
1.23
96582158--96582190
11
2.9
12
86
13
52
33
0
0
66
0.92
96582312--96582372
30
2.0
30
90
6
97
55
9
6
27
1.57
96584312--96584378
32
2.1
32
94
0
116
25
19
5
49
1.71
96594716--96594762
17
2.8
17
77
6
51
51
4
2
42
1.33
96596464--96596583
21
5.3
21
71
18
89
60
0
5
35
1.19
96596491--96596584
33
2.8
32
81
15
95
58
0
6
35
1.24
96599528--96599578
21
2.5
19
79
14
57
29
1
5
62
1.29
96600052--96600089
18
2.1
19
90
5
60
39
0
7
52
1.31
96600059--96600130
20
3.6
19
81
10
74
38
1
6
52
1.37
96600052--96600102
19
2.7
19
85
8
61
41
0
5
52
1.25
96612104--96612167
27
2.4
27
100
0
128
53
0
18
28
1.45
96615133--96615367
117
2.0
117
99
0
461
36
19
7
36
1.80
96615133--96615395
117
2.2
117
91
4
415
36
19
6
36
1.79
96617312--96617374
30
2.1
30
91
5
101
25
4
11
58
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96619207--96619268
31
2.0
31
90
0
97
30
12
24
32
1.93
96619469--96619518
19
2.6
19
93
0
82
24
4
28
44
1.72
96623951--96624012
30
2.1
30
87
0
88
22
20
32
24
1.98
96624368--96624494
55
2.3
54
79
5
146
29
25
27
17
1.97
96646995--96647019
10
2.5
10
100
0
50
56
8
0
36
1.29
96650475--96650543
30
2.3
31
80
7
79
47
26
5
20
1.72
96650492--96650549
30
1.9
30
89
6
91
50
24
6
18
1.72
96653816--96653885
34
2.1
34
89
5
106
51
1
1
45
1.18
96657551--96657680
49
2.6
49
89
3
190
21
30
22
26
1.99
96657551--96657727
93
1.8
97
84
7
227
24
30
20
24
1.99
96657695--96657871
94
1.9
95
84
1
239
24
26
18
30
1.98
96657551--96657914
48
7.7
48
74
9
232
24
27
19
28
1.99
96657692--96657914
94
2.4
93
80
5
234
23
26
19
30
1.98
96663448--96663490
16
2.7
16
96
0
77
72
11
6
9
1.29
96667348--96667388
22
1.9
22
85
5
57
68
0
19
12
1.21
96670736--96670931
49
4.1
49
71
12
158
23
27
23
26
2.00
96670904--96671030
46
2.8
45
84
8
159
23
28
18
29
1.98
96672488--96672519
6
5.5
6
96
3
57
0
28
0
71
0.86
96682275--96682351
35
2.2
35
88
4
111
24
15
24
35
1.94
96685373--96685446
26
2.8
26
83
0
103
16
21
22
39
1.92
96695953--96696005
20
2.7
19
78
16
63
43
0
0
56
0.99
96695962--96696024
31
2.0
31
87
6
90
44
1
0
53
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96702922--96702965
17
2.5
18
86
13
65
18
0
6
75
1.02
96706587--96706719
60
2.2
62
87
4
191
56
12
0
31
1.36
96706895--96706952
14
4.2
14
78
8
66
0
32
0
67
0.91
96706890--96706952
25
2.6
22
82
12
72
0
30
0
69
0.88
96706901--96706952
22
2.5
21
80
19
65
0
32
0
67
0.91
96707777--96707803
13
2.1
13
100
0
54
77
0
7
14
0.97
96712153--96712197
14
3.2
14
83
0
54
35
28
6
28
1.83
96713947--96714009
3
22.0
3
75
15
62
36
1
1
60
1.16
96714135--96714183
3
16.7
3
79
12
57
38
0
2
59
1.09
96714134--96714183
13
3.7
13
75
24
50
40
0
2
58
1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333