Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  304  of  333  ( 39894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100072169--100072208
15
2.7
15
88
0
62
55
10
17
17
1.69
100076978--100077022
22
2.0
22
83
8
56
33
13
15
37
1.86
100078778--100078813
18
2.0
18
88
0
54
11
16
22
50
1.77
100089814--100089874
28
2.2
28
94
2
106
27
13
22
36
1.92
100091437--100091513
39
2.0
39
97
2
147
31
20
5
42
1.74
100095662--100095705
22
2.0
21
91
4
70
40
0
0
59
0.98
100098548--100098628
43
1.9
42
84
2
108
27
23
23
25
2.00
100098591--100098688
42
2.3
44
85
3
128
31
31
16
20
1.95
100102818--100102861
18
2.4
18
85
7
54
36
0
40
22
1.54
100102991--100103290
74
4.0
74
92
3
503
26
11
10
51
1.70
100102993--100103289
149
2.0
148
95
0
531
26
11
10
51
1.70
100103620--100103759
46
3.0
46
95
0
253
42
27
2
27
1.67
100103602--100103735
25
5.6
25
69
16
106
42
26
2
28
1.67
100103631--100103774
14
9.7
14
68
11
63
45
27
1
25
1.62
100103931--100104056
41
3.1
41
90
2
182
17
23
21
38
1.93
100103931--100104097
41
4.1
40
87
3
165
17
20
21
39
1.92
100105616--100105729
39
2.9
39
97
0
210
21
21
30
26
1.98
100105616--100105777
39
4.2
39
87
0
200
20
21
30
27
1.98
100106377--100106439
31
2.0
31
100
0
126
36
15
12
34
1.86
100108139--100108168
15
2.0
15
93
0
51
43
30
0
26
1.55
100108120--100108169
22
2.3
20
77
12
55
48
26
0
26
1.52
100108192--100108225
14
2.4
14
95
0
59
47
32
0
20
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100108774--100108849
40
1.9
40
86
0
107
30
17
19
32
1.95
100108889--100108977
40
2.2
40
85
0
124
23
21
21
33
1.97
100111624--100111664
21
2.0
21
86
13
59
41
2
0
56
1.13
100118521--100118658
3
47.0
3
75
17
87
31
2
1
64
1.14
100118510--100118581
31
2.3
30
76
21
76
36
0
0
63
0.94
100118520--100118610
17
5.5
17
79
13
95
35
2
0
62
1.07
100118524--100118583
22
2.8
22
92
7
97
35
0
0
65
0.93
100118525--100118604
20
4.0
21
76
20
64
35
2
0
62
1.09
100118804--100118863
3
20.3
3
80
10
70
28
3
0
68
1.05
100119558--100119787
125
1.8
125
83
1
309
31
16
16
35
1.91
100120106--100120132
14
1.9
14
100
0
54
44
0
11
44
1.39
100122779--100122924
53
2.7
53
90
4
213
26
15
28
29
1.96
100129003--100129039
9
4.0
9
92
3
56
32
13
13
40
1.84
100134142--100134202
20
2.9
21
82
4
79
11
32
36
19
1.88
100136246--100136270
12
2.1
12
100
0
50
56
0
0
44
0.99
100137175--100137998
412
2.0
412
99
0
1639
31
22
13
32
1.93
100141950--100142003
20
2.7
20
94
0
90
11
31
37
20
1.88
100145673--100145738
6
11.3
6
88
6
91
78
0
3
18
0.87
100145672--100145738
17
3.9
17
88
3
98
77
0
2
19
0.89
100145666--100145738
23
3.2
23
84
11
96
75
0
5
19
0.99
100157220--100157259
21
1.9
21
94
0
71
30
27
20
22
1.98
100174495--100174526
2
16.0
2
100
0
64
0
50
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100175602--100175650
17
3.1
17
80
11
52
32
0
0
67
0.91
100181415--100181456
20
2.1
20
82
8
50
38
2
19
40
1.64
100186320--100186369
25
2.0
24
96
3
91
46
12
6
36
1.66
100186526--100186581
28
2.0
27
83
10
69
50
3
5
41
1.43
100189250--100189288
15
2.6
15
88
8
53
38
2
5
53
1.37
100189347--100189385
20
2.0
20
94
0
69
38
5
0
56
1.22
100192897--100192934
19
2.1
19
90
5
60
55
5
5
34
1.45
100196437--100196510
38
1.9
38
86
5
105
32
14
14
37
1.87
100202902--100202941
20
2.0
20
85
9
55
27
20
27
25
1.99
100203676--100203733
29
2.0
29
100
0
116
41
17
10
31
1.83
100204509--100204568
23
2.5
24
74
15
61
40
13
15
31
1.85
100204629--100204673
22
2.0
23
86
4
65
35
8
15
40
1.79
100218526--100218595
28
2.5
28
81
11
88
12
18
12
55
1.68
100218868--100218970
34
3.0
34
81
1
107
35
12
12
38
1.81
100219669--100219737
27
2.7
25
71
8
75
28
10
14
46
1.77
100220597--100220675
35
2.3
33
81
12
90
37
2
3
55
1.31
100224126--100224172
22
2.1
22
100
0
94
25
27
8
38
1.85
100226700--100226730
15
2.1
14
94
5
53
54
6
3
35
1.42
100226717--100226785
21
3.4
20
71
16
70
55
7
1
36
1.37
100226749--100226826
30
2.6
32
76
19
78
53
7
0
38
1.30
100230112--100230227
25
4.6
25
96
0
205
27
12
30
29
1.93
100237530--100237620
25
3.6
25
92
0
146
28
12
30
28
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100240902--100240942
19
2.2
19
86
4
57
70
4
2
21
1.18
100240868--100240941
31
2.4
31
78
13
82
66
4
2
27
1.23
100246183--100246260
41
1.9
41
86
5
113
28
16
14
41
1.87
100246342--100246382
21
1.9
21
90
5
64
39
2
4
53
1.35
100246391--100246461
8
9.4
8
86
9
96
32
0
0
67
0.91
100246395--100246466
22
3.3
21
79
14
83
29
0
0
70
0.87
100246989--100247039
15
3.5
15
72
5
50
47
27
1
23
1.63
100247162--100247234
37
2.0
37
91
5
121
20
0
28
50
1.48
100247276--100247456
41
4.4
41
92
0
292
18
24
24
33
1.97
100247511--100247537
12
2.2
12
100
0
54
48
29
14
7
1.71
100252412--100252486
5
15.0
5
100
0
150
40
0
40
20
1.52
100265910--100265949
13
2.9
13
92
7
62
25
2
5
67
1.23
100268753--100268800
20
2.3
21
75
13
55
31
6
4
58
1.42
100276030--100276114
43
2.0
43
92
0
143
40
15
11
32
1.83
100277291--100277342
27
2.0
26
84
3
68
50
0
1
48
1.12
100278780--100278816
16
2.3
16
86
13
58
40
0
0
59
0.97
100278831--100278860
13
2.4
13
94
5
53
50
0
0
50
1.00
100278870--100278915
22
2.0
23
87
4
67
43
0
0
56
0.99
100279913--100279959
21
2.3
20
85
7
60
78
2
2
17
0.94
100281343--100281410
22
3.5
20
72
11
52
33
10
4
51
1.56
100296278--100296345
22
3.5
20
72
11
52
33
10
4
51
1.56
100302428--100302468
3
13.7
3
100
0
82
65
0
0
34
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100305220--100305245
3
8.7
3
100
0
52
34
0
0
65
0.93
100307570--100307600
15
2.1
14
94
5
53
64
0
0
35
0.94
100307988--100308094
37
2.9
36
77
14
94
41
2
3
52
1.34
100307988--100308176
11
16.8
11
64
23
58
42
3
3
50
1.36
100310487--100310637
53
2.8
53
88
4
214
30
27
15
26
1.96
100313318--100313439
39
3.1
39
88
2
165
27
4
21
46
1.69
100316045--100316308
43
6.1
43
92
0
429
11
24
32
31
1.91
100316537--100316585
20
2.5
20
90
6
73
40
0
28
30
1.57
100316548--100316588
20
2.0
20
100
0
82
41
0
24
34
1.55
100320234--100320298
28
2.3
27
76
7
67
63
0
7
29
1.22
100321823--100321883
22
2.8
22
80
2
61
68
6
6
18
1.33
100322079--100322110
16
2.0
16
93
0
55
50
6
21
21
1.71
100322102--100322150
12
3.8
12
79
12
53
55
6
8
30
1.54
100322214--100322256
16
2.8
15
86
6
59
62
0
6
30
1.21
100322357--100322392
3
12.0
3
100
0
72
66
0
0
33
0.92
100322985--100323054
26
2.7
26
91
4
106
47
21
4
27
1.69
100323508--100323733
44
5.2
44
78
8
221
25
26
16
30
1.97
100323891--100324603
206
3.5
202
87
5
996
28
21
18
31
1.96
100332346--100332376
15
2.1
15
100
0
62
6
38
0
54
1.26
100332420--100332469
15
3.5
14
79
15
50
42
8
24
26
1.82
100336275--100336335
22
2.8
22
80
2
61
68
6
6
18
1.33
100336425--100336535
3
36.7
3
69
15
50
55
1
8
34
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100336535--100336566
16
2.0
16
93
0
55
50
6
21
21
1.71
100336912--100336951
14
2.6
16
88
7
57
62
5
0
32
1.17
100337422--100337488
25
2.7
25
90
4
100
44
22
4
28
1.72
100339322--100339357
19
1.9
18
94
5
63
30
5
2
61
1.33
100342508--100342537
15
2.0
15
93
0
51
33
6
10
50
1.62
100346277--100346362
42
2.0
42
97
0
163
29
22
11
37
1.89
100349387--100349424
19
2.0
19
100
0
76
52
0
26
21
1.47
100358814--100358860
21
2.2
22
92
3
78
21
19
38
21
1.94
100365005--100365046
21
2.0
22
86
9
61
45
2
4
47
1.36
100365010--100365054
21
2.1
21
84
8
56
48
2
4
44
1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333