Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  143  of  333  ( 39894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46861071--46861131
18
3.4
18
78
15
72
50
0
1
47
1.10
46861065--46861129
17
4.0
15
76
18
58
55
0
1
43
1.09
46861065--46861140
36
2.1
34
86
11
100
57
0
1
40
1.07
46861593--46861653
20
3.0
21
66
9
63
37
11
1
49
1.49
46861586--46861671
40
2.2
40
87
4
120
37
9
2
51
1.47
46861727--46861877
71
2.1
72
93
2
259
51
3
1
42
1.31
46861700--46861831
18
7.3
19
66
16
50
54
2
2
40
1.25
46861931--46862000
17
4.0
17
74
9
61
54
1
1
42
1.18
46867188--46867242
12
4.0
13
75
25
51
50
1
0
47
1.11
46867240--46867274
12
3.0
11
84
15
52
62
0
0
37
0.95
46867240--46867274
13
2.8
13
91
8
56
62
0
0
37
0.95
46867218--46867281
33
1.9
34
84
15
89
60
0
0
39
0.97
46867330--46867362
14
2.3
15
94
5
59
57
6
0
36
1.23
46867309--46867356
25
2.0
25
87
4
71
56
2
0
41
1.11
46867360--46867430
29
2.4
27
78
19
72
57
1
0
40
1.07
46867462--46867531
21
3.3
21
76
21
74
54
0
0
45
0.99
46867248--46867510
135
1.9
135
84
6
345
54
3
2
39
1.28
46867465--46867525
21
2.9
21
85
11
88
57
0
0
42
0.98
46867471--46867534
22
3.0
21
88
9
85
59
0
0
40
0.97
46879217--46879249
12
2.8
12
90
0
57
24
18
0
57
1.40
46880093--46880165
19
3.8
18
76
7
65
13
16
34
35
1.88
46880093--46880175
38
2.2
39
82
6
107
13
19
33
33
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46883260--46883325
35
1.9
34
84
6
89
45
13
7
33
1.72
46888694--46888735
21
2.0
20
90
4
66
30
28
16
23
1.96
46888700--46888744
21
2.1
21
91
0
72
28
28
13
28
1.94
46894469--46894748
48
6.0
47
75
12
227
25
18
32
23
1.97
46898447--46898518
34
2.1
34
82
10
85
27
13
23
34
1.93
46901125--46901345
40
5.6
40
85
3
232
23
20
27
28
1.99
46912643--46912798
37
4.2
37
85
2
188
17
16
27
37
1.92
46912656--46912828
37
4.7
36
82
5
179
17
14
28
39
1.89
46912657--46912798
74
1.9
74
88
2
214
17
15
27
39
1.90
46916655--46916832
27
6.6
27
83
5
198
30
28
14
26
1.95
46916675--46916831
82
1.9
81
89
3
244
31
28
14
26
1.94
46920003--46920094
27
3.4
27
84
0
103
30
22
17
29
1.97
46920111--46920208
26
3.8
26
80
2
90
31
27
10
30
1.90
46920159--46920262
28
3.8
27
85
7
115
24
25
19
30
1.98
46921380--46921412
7
4.9
7
96
3
59
42
0
0
57
0.98
46921676--46921717
21
2.0
21
85
0
57
45
4
11
38
1.62
46922714--46922762
17
2.8
18
84
6
64
34
18
6
40
1.75
46927590--46927696
40
2.7
39
77
16
103
46
2
16
33
1.62
46927632--46927695
13
4.8
13
77
12
58
50
3
14
32
1.58
46944976--46945000
13
1.9
13
100
0
50
32
4
24
40
1.73
46946120--46946243
42
2.9
42
78
4
124
27
16
23
33
1.95
46946140--46946243
43
2.5
42
77
12
113
25
16
24
33
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46952312--46952355
22
1.9
23
81
9
54
11
9
9
70
1.34
46959244--46959475
40
5.8
41
85
3
312
23
21
29
25
1.99
46959244--46959495
120
2.1
120
86
2
355
23
21
28
26
1.99
46959244--46959475
80
2.9
80
90
1
367
23
21
29
25
1.99
46964054--46964230
27
6.6
26
83
5
185
27
15
28
28
1.96
46964054--46964230
54
3.3
54
82
7
207
27
15
28
28
1.96
46964055--46964209
81
1.9
81
86
5
224
27
16
28
28
1.97
46964051--46964230
81
2.2
81
82
3
220
27
16
27
28
1.97
46964136--46964241
27
3.9
27
86
0
77
26
15
28
30
1.96
46972067--46972244
27
6.6
26
82
6
169
26
15
28
29
1.96
46972068--46972223
82
1.9
81
86
3
224
26
16
28
28
1.97
46988515--46988766
40
6.3
40
82
5
289
23
20
28
27
1.99
46988515--46988766
120
2.1
120
84
3
330
23
20
28
27
1.99
46988515--46988746
80
2.9
80
89
3
351
23
21
28
26
1.99
46990342--46990453
59
1.9
59
81
1
134
35
16
24
24
1.94
46996885--46996923
19
2.1
19
85
9
53
38
17
0
43
1.50
46997066--46997111
22
2.1
22
100
0
92
36
17
4
41
1.69
47008354--47008417
32
2.0
32
100
0
128
18
3
37
40
1.67
47010003--47010484
48
10.0
48
89
0
696
27
31
18
22
1.97
47017914--47018086
48
3.7
48
85
4
253
27
31
17
23
1.97
47017914--47018086
93
1.8
94
88
3
267
27
31
17
23
1.97
47020129--47020288
55
3.0
54
80
7
200
35
18
25
21
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47020086--47020283
108
1.8
110
87
4
303
34
17
25
21
1.95
47020525--47020555
16
1.9
16
93
0
53
41
0
22
35
1.54
47024595--47024653
23
2.6
23
92
7
95
27
30
25
16
1.97
47027479--47027586
39
2.7
40
83
8
148
25
21
27
25
1.99
47027484--47027609
39
3.2
40
81
11
145
25
22
27
24
2.00
47034587--47034734
79
1.9
80
90
4
237
25
22
27
25
2.00
47034587--47034734
40
3.7
40
90
5
237
25
22
27
25
2.00
47039842--47039906
33
2.0
33
100
0
130
30
15
24
29
1.96
47041383--47041432
24
2.0
25
81
11
59
10
32
2
56
1.44
47050085--47050127
6
7.2
6
79
10
52
30
6
0
62
1.21
47051558--47051597
19
2.1
19
86
9
55
30
12
7
50
1.68
47055711--47055754
23
1.9
23
90
0
70
15
0
29
54
1.42
47055868--47055957
19
4.8
19
82
10
114
37
1
18
42
1.58
47055868--47055957
39
2.5
35
83
7
108
37
1
18
42
1.58
47056491--47056745
126
2.0
126
90
0
402
36
18
18
27
1.94
47059772--47059806
17
2.1
17
94
0
61
42
8
28
20
1.81
47061388--47061521
48
2.8
47
81
8
139
50
5
9
34
1.58
47061655--47061741
11
7.9
11
78
5
77
41
1
18
39
1.58
47063262--47063327
30
2.2
32
81
8
84
34
1
4
59
1.27
47070036--47070077
8
5.1
8
82
11
50
50
0
2
47
1.14
47070985--47071082
30
2.9
35
73
17
107
29
27
16
26
1.97
47071017--47071103
30
2.9
30
91
0
129
27
27
19
25
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47074658--47074687
6
4.8
6
95
4
51
30
0
0
70
0.88
47074782--47074861
35
2.3
35
86
4
108
21
21
18
38
1.93
47074796--47074882
35
2.5
35
77
7
95
21
26
13
37
1.91
47076389--47076438
19
2.7
18
84
9
64
24
4
2
70
1.15
47076332--47076438
28
3.8
27
74
16
76
28
3
1
66
1.19
47083779--47083813
3
11.7
3
100
0
70
34
0
0
65
0.93
47084631--47085063
116
3.8
116
77
8
449
15
17
17
48
1.81
47084795--47085061
110
2.4
114
80
9
282
16
16
17
48
1.81
47084656--47085063
226
1.8
225
81
3
507
16
17
17
48
1.81
47090982--47091025
21
2.2
20
83
4
52
15
15
22
45
1.85
47094383--47094424
21
2.0
21
95
0
75
21
16
14
47
1.82
47094676--47094763
25
3.6
24
76
10
72
20
22
21
35
1.96
47101099--47101133
13
2.6
14
86
4
54
71
0
8
20
1.11
47105609--47105775
35
4.8
35
93
0
255
37
24
12
25
1.91
47107288--47107322
16
2.2
16
94
0
61
25
25
5
42
1.77
47110334--47110377
21
2.1
21
100
0
88
31
18
9
40
1.81
47117116--47117173
24
2.4
24
97
0
107
60
0
29
10
1.30
47134200--47134241
20
2.1
20
83
16
52
64
0
9
26
1.24
47136523--47136564
22
1.9
22
85
9
59
47
2
0
50
1.14
47137304--47137548
117
2.1
119
87
3
361
24
22
28
25
1.99
47138155--47138210
20
2.6
22
72
13
53
30
8
7
53
1.59
47149667--47149724
28
2.2
28
82
11
70
62
1
6
29
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47153973--47154011
14
2.8
14
96
0
69
58
10
7
23
1.56
47157226--47157288
29
2.1
29
80
13
67
42
9
3
44
1.52
47159244--47159365
50
2.5
49
82
5
142
28
21
13
36
1.92
47181028--47181058
6
5.2
6
100
0
62
0
0
51
48
1.00
47183268--47183319
26
2.0
26
96
0
95
7
34
21
36
1.82
47184930--47184957
14
2.0
14
100
0
56
42
14
7
35
1.73
47185253--47185290
15
2.4
17
91
8
62
63
0
0
36
0.95
47185635--47185695
21
2.9
21
73
11
61
32
1
4
60
1.28
47187973--47188034
25
2.5
25
81
0
79
45
19
17
17
1.86
47190065--47190146
18
4.6
17
74
16
69
31
1
1
65
1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333