Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  127  of  333  ( 39894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41006220--41006373
67
2.3
67
98
0
299
30
22
28
18
1.97
41006303--41006354
27
2.0
26
88
3
77
36
21
25
17
1.94
41006600--41006872
27
10.2
27
81
5
243
25
17
19
36
1.94
41006617--41006872
54
4.8
55
81
6
283
25
17
20
37
1.93
41006626--41006872
81
3.1
80
81
7
268
25
17
19
37
1.93
41006599--41006872
133
2.1
134
82
3
329
25
17
19
36
1.94
41006877--41007292
27
15.4
27
82
5
338
37
8
22
31
1.84
41006864--41007267
80
5.0
80
71
10
293
37
9
21
31
1.85
41006857--41007345
107
4.5
106
73
8
326
36
8
21
33
1.85
41006992--41007064
28
2.7
27
91
6
112
30
6
20
42
1.78
41006802--41007158
190
1.9
189
84
5
488
33
10
22
33
1.88
41007190--41007411
27
8.3
26
81
5
119
34
7
21
36
1.82
41006868--41007415
54
10.2
53
76
9
203
35
9
20
33
1.85
41007314--41007364
26
2.0
26
92
0
84
37
7
15
39
1.77
41007272--41007436
53
3.1
54
78
6
149
31
9
18
40
1.82
41008328--41008457
48
2.7
47
80
7
136
25
27
19
27
1.99
41016781--41017000
40
5.6
40
87
3
304
30
25
20
23
1.99
41016781--41017000
79
2.8
80
88
4
322
30
25
20
23
1.99
41025254--41025475
40
5.6
40
89
1
322
29
26
20
23
1.99
41035428--41035516
24
3.7
24
96
0
151
32
2
38
26
1.69
41036477--41036506
16
1.9
15
93
6
51
53
20
20
6
1.67
41036920--41037029
27
4.1
27
86
8
136
15
22
22
39
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41036920--41037029
53
2.1
53
86
3
150
15
22
22
39
1.92
41042637--41042732
45
2.1
48
88
5
144
35
14
25
25
1.94
41046962--41047080
48
2.5
48
81
4
136
36
14
21
27
1.92
41051305--41051398
45
2.1
46
91
2
154
35
14
24
25
1.94
41051309--41051415
45
2.3
46
87
1
153
34
15
22
27
1.95
41053523--41053689
46
3.6
46
75
12
153
23
22
26
27
1.99
41053520--41053690
92
1.8
93
87
1
254
23
22
26
26
2.00
41056657--41056756
24
4.2
24
94
0
155
33
2
40
25
1.67
41058153--41058263
27
4.1
27
88
1
152
15
25
22
36
1.93
41060552--41060670
29
4.2
29
81
2
143
29
14
29
26
1.95
41061701--41061734
18
1.9
18
88
5
52
41
20
8
29
1.82
41066598--41066676
37
2.1
37
90
0
122
25
31
18
24
1.98
41066795--41067176
49
8.1
49
87
5
531
28
29
9
32
1.89
41066869--41067148
137
2.0
138
94
1
490
29
29
8
32
1.88
41074138--41074281
49
2.9
49
82
4
189
27
27
20
25
1.99
41074144--41074281
51
2.8
49
81
4
168
28
27
20
23
1.99
41080012--41080416
55
7.6
54
76
10
347
36
16
24
22
1.94
41079979--41080408
207
2.1
209
94
1
749
35
15
25
23
1.94
41080534--41080566
16
2.0
17
88
5
50
39
3
21
36
1.69
41084711--41085028
46
6.7
48
77
10
250
27
16
29
25
1.97
41084712--41085027
138
2.2
144
81
9
366
26
17
30
25
1.97
41084664--41085027
48
7.7
48
74
12
199
27
17
29
25
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41093763--41093811
25
2.0
25
87
0
71
36
22
14
26
1.92
41093842--41093887
10
4.6
10
87
12
60
36
10
17
34
1.85
41093848--41093879
11
3.0
11
95
4
57
37
15
18
28
1.92
41093848--41093887
21
1.9
21
90
10
64
37
12
17
32
1.87
41093961--41094006
25
1.9
24
82
8
58
26
21
23
28
1.99
41096799--41096832
13
2.6
13
95
0
59
61
5
0
32
1.20
41097057--41097102
20
2.2
21
92
3
76
32
21
26
19
1.97
41097370--41097410
22
1.9
21
85
5
55
48
14
17
19
1.81
41102193--41102377
40
4.7
40
80
7
200
24
22
27
25
2.00
41102194--41102410
40
5.5
40
79
9
133
25
21
27
25
2.00
41102230--41102410
79
2.3
78
76
9
188
27
20
26
25
1.99
41119366--41119409
22
2.0
22
95
0
79
34
4
36
25
1.76
41124114--41124198
39
2.2
39
93
2
145
9
25
5
58
1.52
41124284--41124319
17
2.1
18
89
5
56
13
13
0
72
1.13
41126105--41126164
22
2.7
23
73
19
63
66
6
0
26
1.16
41126114--41126147
4
8.0
4
90
9
50
73
2
0
23
0.97
41127502--41127553
23
2.3
22
75
21
54
9
23
1
65
1.32
41127547--41127585
18
2.2
18
85
0
51
12
23
2
61
1.43
41129917--41129976
22
2.7
23
73
19
63
66
6
0
26
1.16
41129926--41129959
4
8.0
4
90
9
50
73
2
0
23
0.97
41132618--41132657
20
2.0
20
100
0
80
35
10
25
30
1.88
41136982--41137053
28
2.5
28
78
10
83
69
6
13
9
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41137896--41137930
18
1.9
18
88
11
54
57
0
20
22
1.41
41149771--41149847
39
2.0
39
94
0
136
31
6
15
46
1.71
41149864--41149986
50
2.4
50
84
2
165
34
13
13
38
1.85
41152486--41152538
16
3.6
16
85
9
60
71
3
11
13
1.26
41153460--41153494
18
1.9
18
88
11
54
57
0
20
22
1.41
41158551--41158588
8
4.9
8
87
6
51
89
5
5
0
0.59
41159555--41159683
18
7.4
17
66
20
61
52
3
27
17
1.59
41159615--41159720
48
2.2
47
83
12
128
57
1
25
15
1.48
41164513--41164557
9
4.7
9
84
15
63
68
11
0
20
1.19
41164512--41164559
10
4.8
10
85
10
71
68
10
0
20
1.18
41164511--41164563
20
2.5
21
87
6
81
66
11
0
22
1.24
41176699--41176738
19
2.1
19
85
0
53
25
35
17
22
1.95
41177980--41178027
14
3.4
14
85
0
60
18
31
6
43
1.75
41178286--41178319
15
2.3
15
90
5
52
76
5
8
8
1.15
41178300--41178352
22
2.4
22
84
9
72
69
9
5
15
1.33
41179269--41179325
11
5.5
10
73
22
55
77
1
17
3
1.00
41179269--41179325
5
11.0
5
77
17
55
77
1
17
3
1.00
41179269--41179325
16
3.7
14
80
17
60
77
1
17
3
1.00
41181883--41181948
21
3.0
22
86
4
80
30
4
30
34
1.78
41188742--41188775
17
2.0
17
94
0
59
20
8
5
64
1.43
41188860--41188891
11
2.9
11
95
0
55
18
6
0
75
1.01
41191434--41191470
11
3.2
12
85
14
51
13
5
8
72
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41193181--41193277
30
3.2
30
75
2
106
28
15
26
28
1.96
41195424--41195475
23
2.3
22
75
21
54
9
23
1
65
1.32
41203969--41204012
10
4.5
10
91
5
72
88
2
0
9
0.59
41211887--41211934
14
3.4
14
85
0
60
18
31
6
43
1.75
41213815--41213862
20
2.4
20
85
0
60
12
16
18
52
1.75
41213824--41213865
20
2.1
20
90
0
66
9
14
23
52
1.71
41219071--41219188
55
2.1
55
84
6
159
25
22
13
38
1.90
41219812--41219866
20
2.8
20
88
0
83
29
16
29
25
1.97
41221348--41221386
15
2.4
15
87
12
51
10
20
2
66
1.33
41223853--41223920
29
2.3
30
95
5
122
10
11
2
75
1.16
41223965--41224016
12
4.5
12
88
4
72
13
1
5
78
1.01
41225265--41225382
55
2.1
55
84
6
159
25
22
13
38
1.90
41226005--41226059
20
2.8
20
88
0
83
29
16
29
25
1.97
41228815--41228859
14
3.3
14
78
6
56
35
0
15
48
1.45
41230060--41230116
11
5.0
11
77
12
53
73
7
3
15
1.18
41233609--41233653
14
3.3
14
78
6
56
35
0
15
48
1.45
41236812--41236855
22
2.0
22
95
0
79
25
36
4
34
1.76
41237697--41237730
12
2.8
12
90
0
50
50
8
17
23
1.74
41237820--41237865
18
2.5
19
79
6
51
65
2
26
6
1.28
41239824--41239877
20
2.7
20
85
0
72
38
18
18
24
1.93
41250593--41250652
18
3.2
18
75
11
66
6
16
3
73
1.18
41264333--41264403
12
5.6
12
73
16
54
71
4
7
16
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41265481--41265588
6
17.7
6
68
13
60
73
3
16
6
1.19
41265485--41265543
18
3.3
18
80
0
73
76
6
11
5
1.14
41265549--41265586
13
2.8
13
82
17
51
73
0
18
7
1.06
41265467--41265586
12
10.0
12
68
19
54
71
3
16
8
1.24
41265550--41265600
21
2.4
21
74
6
50
74
1
17
5
1.11
41267644--41267690
20
2.3
20
85
0
67
29
36
12
21
1.91
41269219--41269263
22
2.1
21
87
4
63
82
2
11
4
0.91
41269219--41269254
10
3.8
9
89
10
54
86
2
8
2
0.77
41270283--41270388
48
2.2
47
85
9
135
59
1
24
14
1.45
41272059--41272105
20
2.3
20
85
0
67
29
36
12
21
1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333