Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  331  of  333  ( 39894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107376508--107376565
29
2.0
29
100
0
116
62
3
6
27
1.37
107394802--107394841
19
2.2
18
90
4
62
40
15
2
42
1.60
107402272--107402307
18
2.0
18
94
0
63
27
30
16
25
1.97
107407849--107408042
46
4.2
45
84
4
228
42
13
22
20
1.88
107407839--107408007
92
1.8
92
88
2
259
43
13
23
20
1.86
107408301--107408333
17
2.0
17
94
5
59
48
0
15
36
1.45
107410667--107410752
42
2.0
42
100
0
172
26
24
18
30
1.98
107420872--107420910
18
2.1
18
85
4
51
38
2
0
58
1.12
107421641--107421668
11
2.5
11
100
0
56
92
0
7
0
0.37
107423322--107423358
18
2.1
18
100
0
74
43
16
16
24
1.87
107428510--107428547
16
2.4
17
86
8
53
34
2
0
63
1.09
107429457--107429502
15
2.8
17
81
15
53
65
0
2
32
1.05
107436969--107437011
20
2.2
19
87
4
59
62
2
0
34
1.08
107436969--107437038
18
3.7
19
76
5
61
60
4
1
34
1.25
107438495--107438543
19
2.4
21
86
6
66
59
4
4
32
1.35
107440143--107440170
13
2.2
13
100
0
56
21
35
14
28
1.92
107449824--107449890
19
3.2
21
77
18
68
43
0
1
55
1.09
107450765--107450826
31
2.0
32
84
9
83
43
12
6
37
1.69
107456574--107456606
16
2.1
16
100
0
66
6
18
6
69
1.30
107483140--107483180
21
2.0
21
81
18
50
31
19
26
21
1.97
107495164--107495198
17
2.0
18
88
5
54
42
0
0
57
0.99
107495162--107495255
30
3.3
28
68
28
72
40
4
0
55
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107499313--107499363
16
3.2
16
85
0
57
58
5
3
31
1.40
107502817--107502858
15
2.7
16
77
7
59
59
16
2
21
1.48
107505452--107505642
103
1.9
102
84
5
260
41
8
6
42
1.63
107520933--107520965
16
2.1
16
100
0
66
42
15
6
36
1.71
107523124--107523161
19
1.9
19
89
5
58
28
21
10
39
1.86
107524099--107524145
15
3.0
15
75
22
51
38
6
0
55
1.26
107532991--107533015
5
5.0
5
100
0
50
40
60
0
0
0.97
107535214--107535264
24
2.1
24
89
7
77
72
13
0
13
1.12
107537708--107537903
103
1.9
103
96
0
365
39
7
8
44
1.61
107540873--107541100
46
5.0
46
90
1
314
39
14
24
21
1.90
107541362--107541407
23
1.9
25
82
8
60
54
0
15
30
1.41
107551915--107551940
7
3.7
7
100
0
52
53
0
0
46
1.00
107552023--107552056
16
2.1
16
88
0
50
70
2
0
26
1.01
107559885--107560079
98
2.0
98
86
2
275
26
8
23
42
1.81
107559984--107560624
186
3.4
186
90
0
969
25
14
20
39
1.90
107565155--107565216
31
2.0
31
90
0
97
43
12
11
32
1.79
107567943--107567982
18
2.2
18
86
8
55
60
0
0
40
0.97
107572267--107572308
21
2.0
21
100
0
84
33
4
19
42
1.72
107575067--107575094
13
2.2
13
100
0
56
0
7
14
78
0.95
107575542--107575612
31
2.3
31
80
4
81
21
8
19
50
1.73
107579101--107579145
23
2.0
23
90
0
72
11
31
24
33
1.90
107579424--107579450
2
13.5
2
100
0
54
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107584932--107584972
19
2.1
19
86
13
57
73
2
4
19
1.13
107589038--107589170
67
2.0
67
89
2
205
45
17
11
26
1.82
107601522--107601571
9
5.6
9
87
0
73
44
18
10
28
1.81
107601591--107601631
6
6.5
6
83
10
55
17
0
4
78
0.93
107606789--107606847
20
3.2
20
64
26
58
30
1
16
50
1.55
107606787--107606861
34
2.2
34
97
0
141
34
2
13
49
1.56
107607228--107607262
17
2.0
18
88
5
54
25
37
0
37
1.57
107611417--107611475
29
2.0
30
83
9
77
35
15
11
37
1.84
107613501--107613536
11
3.4
11
88
7
56
72
0
0
27
0.85
107613501--107613538
10
3.7
10
92
3
58
71
0
0
28
0.87
107619301--107619992
101
6.9
100
74
6
494
31
20
18
29
1.96
107619301--107619978
300
2.3
301
84
2
860
32
20
18
28
1.96
107619981--107620009
15
1.9
15
100
0
58
27
37
0
34
1.57
107624740--107624825
29
2.9
29
77
8
102
27
15
11
45
1.80
107624787--107624855
29
2.2
32
82
12
83
31
15
10
42
1.81
107634336--107634395
28
2.1
28
87
6
86
35
0
6
58
1.24
107637183--107637226
16
2.8
16
82
6
54
18
11
20
50
1.77
107643999--107644034
18
2.0
18
88
0
54
61
0
0
38
0.96
107644181--107644211
16
1.9
16
93
0
53
35
6
9
48
1.62
107652582--107652628
20
2.5
19
76
10
53
59
0
0
40
0.97
107652599--107652654
26
2.2
26
87
6
78
55
0
0
44
0.99
107654974--107655004
6
5.2
6
100
0
62
32
0
0
67
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107659255--107659288
15
2.3
15
100
0
68
50
11
11
26
1.73
107659692--107659721
6
5.0
6
95
0
51
50
30
0
20
1.49
107665411--107665479
33
2.1
33
88
0
102
69
17
5
7
1.32
107668032--107668697
194
3.4
194
87
2
913
25
12
20
41
1.87
107682867--107682905
13
3.1
13
92
3
62
30
2
7
58
1.39
107687369--107687404
16
2.2
16
90
0
54
47
16
0
36
1.47
107687695--107687725
11
2.8
11
100
0
62
29
9
0
61
1.28
107690075--107690113
19
2.1
19
85
0
51
61
5
0
33
1.18
107699750--107699866
60
2.0
59
82
1
144
45
14
13
26
1.82
107699834--107699940
31
3.5
30
79
5
117
42
19
11
26
1.84
107701678--107701723
18
2.5
19
75
10
51
43
0
13
43
1.43
107701844--107701875
14
2.3
14
100
0
64
31
6
18
43
1.75
107704062--107704739
350
1.9
351
87
3
1001
26
14
19
39
1.90
107718352--107718618
75
3.6
74
90
2
408
14
22
26
36
1.93
107728751--107728802
9
5.7
9
73
13
52
73
1
3
21
1.10
107728751--107728801
17
2.8
17
80
13
57
72
1
3
21
1.11
107729534--107729587
24
2.3
23
78
12
56
53
1
3
40
1.29
107729536--107729582
24
2.0
24
83
8
60
57
2
2
38
1.23
107740050--107740080
15
2.1
15
93
0
53
22
6
29
41
1.78
107742783--107742807
11
2.3
11
100
0
50
60
0
8
32
1.26
107745181--107745337
78
2.0
78
98
0
305
22
14
21
42
1.88
107748573--107748607
6
5.8
6
87
12
54
0
0
14
85
0.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107748573--107748607
13
2.9
12
88
12
54
0
0
14
85
0.59
107752699--107752735
16
2.2
18
85
9
51
45
5
2
45
1.40
107762470--107762546
31
2.5
31
74
4
75
37
15
16
29
1.90
107763915--107763985
29
2.4
30
81
11
76
39
1
1
57
1.16
107766539--107766581
22
2.0
22
85
0
59
37
6
16
39
1.75
107770265--107770308
23
1.9
24
90
9
74
29
4
0
65
1.12
107773276--107773324
21
2.3
21
92
0
80
30
8
10
51
1.65
107774215--107774255
18
2.3
18
86
0
55
26
31
7
34
1.84
107774258--107774731
237
2.0
237
92
2
790
28
24
19
27
1.99
107778117--107778174
28
2.1
28
96
0
107
13
22
17
46
1.83
107782875--107782911
17
2.2
17
100
0
74
24
5
5
64
1.36
107784887--107784927
21
2.0
20
85
4
55
34
2
2
60
1.23
107785124--107785153
15
1.9
16
93
6
53
50
6
10
33
1.62
107786444--107786604
85
1.9
85
100
0
322
42
18
13
26
1.87
107794996--107795042
21
2.2
22
92
3
78
21
19
38
21
1.94
107798893--107798940
23
2.1
23
84
3
62
22
8
8
60
1.52
107819375--107819412
20
1.9
20
100
0
76
52
7
10
28
1.64
107823513--107823601
42
2.1
42
89
0
133
52
13
5
28
1.62
107829594--107829682
42
2.1
42
93
0
151
50
14
6
28
1.68
107829707--107829743
19
2.0
18
94
5
65
43
16
5
35
1.71
107854243--107854311
36
1.9
36
84
0
93
36
11
20
31
1.88
107854244--107854311
18
3.8
18
78
0
73
36
11
19
32
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107872692--107872865
46
3.8
46
76
15
187
20
20
28
29
1.98
107872689--107872858
93
1.8
93
94
0
304
21
20
29
28
1.98
107873147--107873241
47
2.0
47
100
0
190
26
8
14
50
1.71
107875336--107875386
19
2.6
19
87
3
75
45
5
0
49
1.26
107890330--107890418
18
4.9
18
84
0
124
33
15
22
28
1.95
107890330--107890418
36
2.5
36
92
0
142
33
15
22
28
1.95
107895927--107896012
18
4.8
18
89
0
127
29
23
15
32
1.95
107895921--107896012
36
2.6
36
94
0
157
29
22
15
32
1.95
107900247--107900737
47
10.3
47
93
2
793
32
8
28
29
1.87
107900247--107900737
96
5.2
96
94
0
819
32
8
28
29
1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333