genome.fa.s3.2.7.7.80.10.50.1000.312.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  312  of  333  ( 39894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102200768--102200798	12	2.6	12	94	0	53	0	25	0	74	0.82
102200822--102200855	16	2.1	17	88	5	52	5	17	5	70	1.28
102201175--102201205	15	2.1	14	94	5	53	54	6	3	35	1.42
102201192--102201260	21	3.4	20	71	16	70	55	7	1	36	1.37
102204395--102204458	22	2.9	22	77	13	60	62	4	0	32	1.16
102204432--102204463	16	2.1	16	94	5	57	56	6	0	37	1.25
102204521--102205082	114	4.9	115	94	3	908	52	16	0	30	1.50
102204521--102205080	229	2.4	229	92	4	925	52	15	0	30	1.49
102204521--102205154	114	5.7	113	91	5	848	52	15	0	31	1.49
102205355--102205416	3	19.3	3	84	12	79	0	38	0	61	0.96
102205355--102205409	10	5.6	10	97	2	103	0	38	0	61	0.96
102205929--102205958	15	2.0	15	93	0	51	43	3	13	40	1.60
102207600--102207661	31	2.0	30	84	12	81	30	12	6	50	1.66
102208086--102208154	32	2.1	33	97	2	131	17	20	15	46	1.84
102208899--102208987	30	3.0	30	80	9	101	39	2	17	40	1.63
102209371--102209421	24	2.3	23	83	10	61	54	0	1	43	1.11
102230258--102230299	21	2.0	22	85	4	59	50	2	42	4	1.36
102231879--102231916	20	1.9	20	100	0	76	47	7	10	34	1.67
102234347--102234402	26	2.1	28	83	6	71	41	5	3	50	1.43
102235039--102235217	88	2.0	89	91	4	290	31	23	10	34	1.88
102239710--102239747	19	2.0	19	94	0	67	21	18	15	44	1.86
102244037--102244091	4	13.8	4	96	0	101	23	1	23	50	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102245514--102245558	23	2.0	21	83	8	54	28	2	17	51	1.58
102247650--102247746	33	2.9	33	89	0	140	19	10	38	31	1.85
102250416--102250451	18	2.1	18	89	5	56	66	0	0	33	0.92
102250717--102250791	19	3.9	19	89	5	107	37	16	12	34	1.85
102250910--102250948	21	1.9	20	84	5	51	10	5	12	71	1.28
102251141--102251340	45	4.5	45	82	3	242	27	28	12	32	1.93
102251141--102251324	89	2.1	90	85	3	246	28	28	11	30	1.92
102251354--102251647	78	3.8	78	89	2	448	24	23	19	31	1.98
102257831--102257899	21	3.4	21	71	15	72	36	1	7	55	1.37
102257886--102257916	15	2.1	14	94	5	53	35	3	6	54	1.42
102266136--102266171	18	2.1	18	89	5	56	66	0	0	33	0.92
102266437--102266480	21	2.0	21	86	8	61	38	18	6	36	1.77
102266460--102266503	17	2.5	18	92	3	72	36	13	11	38	1.81
102268314--102268367	26	2.1	26	92	0	90	25	24	12	37	1.91
102270349--102270401	13	4.1	13	78	9	63	33	9	22	33	1.86
102271786--102271819	18	1.9	18	88	5	52	38	2	2	55	1.30
102271990--102272049	31	2.0	29	83	6	75	40	10	8	41	1.69
102272153--102272221	29	2.4	28	95	2	111	55	1	2	40	1.24
102272155--102272207	18	3.3	18	66	33	57	50	0	3	45	1.19
102272934--102273132	107	1.9	107	95	2	364	42	5	9	43	1.59
102276033--102276073	21	2.0	21	95	0	73	29	9	26	34	1.88
102279035--102279075	20	2.0	20	90	0	64	46	9	2	41	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102279138--102279199	33	1.9	32	90	3	97	35	9	16	38	1.81
102281221--102281499	125	2.2	125	92	1	481	24	29	20	26	1.99
102284825--102284861	19	1.9	19	88	0	56	40	18	10	29	1.85
102287812--102287848	3	12.3	3	100	0	74	35	0	0	64	0.94
102287809--102287865	12	4.4	14	89	10	63	33	1	0	64	1.04
102300022--102300065	21	2.2	20	84	12	54	70	2	6	20	1.21
102300175--102300234	3	19.7	3	96	3	111	66	0	1	31	1.01
102303552--102303633	42	2.0	42	85	0	110	20	20	13	45	1.85
102305284--102305381	48	2.0	48	94	3	171	45	20	7	26	1.76
102316252--102316465	42	4.7	46	83	11	232	30	27	14	27	1.96
102316322--102316580	48	5.2	48	81	8	281	31	27	14	27	1.95
102316473--102316580	53	2.0	53	87	3	155	29	26	14	28	1.95
102319587--102319632	23	2.0	23	95	0	83	45	17	0	36	1.49
102320498--102320556	17	3.5	17	71	0	55	35	27	11	25	1.91
102320702--102320887	34	5.5	34	81	2	194	46	21	7	24	1.77
102320701--102320887	68	2.8	68	81	4	218	45	21	7	24	1.77
102320708--102320889	51	3.6	51	78	5	188	47	20	7	24	1.75
102320702--102320889	17	11.1	17	78	2	162	46	21	7	25	1.77
102332804--102332858	22	2.5	22	82	14	60	30	5	0	63	1.17
102332825--102332867	22	2.0	22	86	9	61	27	2	0	69	1.00
102340918--102340957	17	2.4	17	83	4	55	60	2	0	37	1.11
102342434--102342496	31	2.0	32	87	9	94	39	1	3	55	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102350570--102350615	3	15.3	3	95	0	83	63	2	0	34	1.07
102353393--102353457	31	2.1	31	100	0	130	23	9	35	32	1.86
102353683--102353747	31	2.1	31	97	0	121	24	9	33	32	1.87
102353237--102353822	290	2.0	290	97	0	1118	35	10	23	30	1.88
102372254--102372290	16	2.3	16	85	0	56	56	8	0	35	1.29
102377403--102377442	2	20.0	2	100	0	80	50	0	50	0	1.00
102379070--102379107	15	2.4	16	86	4	51	42	18	2	36	1.64
102382078--102382131	27	2.0	27	92	0	90	33	18	14	33	1.92
102386947--102386971	12	2.1	12	100	0	50	56	8	16	20	1.65
102387259--102387292	16	2.1	16	88	0	50	41	20	14	23	1.89
102387852--102387927	20	3.8	20	75	1	71	23	7	10	57	1.58
102403549--102403816	104	2.6	105	93	1	450	18	20	30	29	1.97
102406043--102406070	5	5.6	5	100	0	56	82	0	0	17	0.68
102406433--102406493	30	2.0	30	100	0	122	9	13	31	45	1.75
102407680--102407720	21	2.0	21	90	0	64	26	12	9	51	1.70
102408470--102408499	15	2.0	15	93	0	51	36	13	26	23	1.92
102430052--102430110	27	2.2	27	84	3	84	61	1	5	32	1.28
102430046--102430109	19	3.5	18	75	12	60	60	1	4	32	1.26
102430409--102430461	20	2.7	19	82	8	61	33	7	1	56	1.38
102430435--102430483	25	1.9	26	83	4	64	28	10	0	61	1.29
102431774--102431856	22	3.9	21	71	6	67	61	12	8	18	1.55
102441854--102441909	28	2.0	28	100	0	112	46	14	14	25	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102442368--102442439	32	2.2	32	85	0	99	31	16	8	43	1.78
102442951--102443000	23	2.2	23	88	0	73	46	12	12	30	1.77
102443581--102443626	10	4.6	10	78	10	58	21	10	2	65	1.35
102446300--102446782	54	8.9	54	76	5	285	39	12	17	29	1.87
102446272--102446777	108	4.7	107	76	6	362	39	12	18	29	1.88
102446300--102446785	162	3.0	159	77	5	440	39	13	17	29	1.88
102447107--102447145	18	2.2	18	86	9	53	20	0	12	66	1.24
102447146--102447179	12	2.8	12	90	0	50	67	0	0	32	0.91
102447346--102447450	54	1.9	54	82	3	131	36	13	20	29	1.91
102449071--102449357	42	6.8	42	93	0	477	33	21	21	22	1.98
102449073--102449453	42	9.1	42	88	2	192	31	21	20	26	1.98
102449512--102449545	14	2.4	14	95	0	59	52	20	8	17	1.71
102449769--102449839	21	3.4	21	80	0	79	2	45	18	33	1.64
102451231--102451275	13	3.5	13	87	0	72	51	2	6	40	1.41
102451231--102451289	26	2.4	25	86	8	77	50	3	6	38	1.45
102451280--102451323	17	2.6	17	100	0	88	36	0	15	47	1.46
102451231--102451330	13	7.3	13	77	14	53	45	2	10	43	1.49
102454095--102454411	115	2.8	114	93	1	553	38	18	15	27	1.91
102454160--102454238	40	2.0	40	84	0	104	34	18	16	30	1.94
102454276--102454353	40	2.0	39	82	7	95	34	19	16	29	1.94
102454315--102454486	75	2.3	74	95	2	308	39	18	13	27	1.89
102454200--102454578	189	2.0	189	90	1	589	39	19	14	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102454638--102454859	114	1.9	115	85	3	306	31	22	18	28	1.97
102455364--102455537	7	25.1	7	67	15	60	40	38	3	17	1.67
102455443--102455499	27	2.1	27	96	0	105	38	45	3	12	1.59
102455969--102456106	73	1.9	72	86	4	197	30	19	21	28	1.98
102456006--102456332	113	2.9	114	83	2	372	30	22	20	25	1.98
102456300--102456451	39	3.8	39	79	3	144	22	19	21	36	1.95
102456686--102456727	16	2.6	16	96	0	75	19	19	54	7	1.66
102457869--102457905	11	3.2	12	85	11	51	56	5	5	32	1.45
102460678--102460711	17	2.0	17	88	0	50	64	0	0	35	0.94
102461570--102461626	19	2.9	19	78	2	60	35	0	5	59	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333