Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  296  of  333  ( 39894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97689022--97689078
30
1.9
29
86
10
80
49
5
0
45
1.24
97690995--97691065
3
22.3
3
72
11
52
59
4
4
32
1.36
97691043--97691100
21
2.9
19
80
17
64
56
0
10
32
1.33
97692280--97692316
18
2.1
18
90
5
58
5
0
16
78
0.93
97692611--97692793
94
2.0
93
86
3
262
29
20
18
31
1.96
97692611--97692839
94
2.5
93
82
5
248
27
20
18
34
1.96
97692711--97692997
138
2.1
138
80
2
317
25
21
19
33
1.97
97692621--97693074
232
2.0
229
82
3
545
27
20
18
33
1.96
97692850--97693948
94
11.7
94
82
2
1114
28
19
19
32
1.96
97697260--97697362
52
2.0
52
84
7
138
28
17
25
29
1.97
97697256--97697383
52
2.6
47
77
14
134
28
17
25
28
1.97
97702637--97702700
12
5.5
11
77
17
58
59
7
3
29
1.41
97702730--97702794
18
3.3
18
70
25
60
56
0
10
32
1.34
97702703--97702801
41
2.4
41
98
1
191
55
0
11
33
1.35
97702654--97702765
3
36.3
3
68
12
57
58
2
7
32
1.39
97704086--97704358
43
6.3
43
81
2
289
28
27
17
26
1.97
97717104--97717201
42
2.4
41
84
1
115
24
12
17
45
1.82
97717363--97717458
8
11.9
8
81
14
101
34
0
3
62
1.11
97717356--97717432
15
5.1
15
84
4
102
36
0
1
62
1.04
97717351--97717431
7
11.0
7
85
7
81
39
0
1
59
1.05
97717351--97717431
37
2.2
37
86
4
110
39
0
1
59
1.05
97718441--97718484
17
2.8
16
82
6
54
6
0
15
77
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97731316--97731430
42
2.7
42
85
6
153
26
27
14
30
1.95
97731502--97731712
31
6.8
31
93
0
314
26
25
20
27
1.99
97731688--97731816
50
2.5
51
88
5
190
25
21
16
36
1.94
97751987--97752011
12
2.1
12
100
0
50
32
44
16
8
1.76
97772551--97772665
42
2.7
42
85
6
153
26
27
14
30
1.95
97772737--97772947
31
6.8
31
93
0
314
26
25
20
27
1.99
97772923--97773051
50
2.5
51
88
5
190
25
21
16
36
1.94
97793306--97793330
12
2.1
12
100
0
50
32
44
16
8
1.76
97810008--97810044
12
3.1
12
88
0
56
51
10
13
24
1.73
97812127--97812176
8
6.4
8
80
13
59
38
0
0
62
0.96
97812136--97812176
5
8.0
5
84
15
57
41
0
0
58
0.98
97812114--97812176
16
4.0
16
81
8
67
34
1
1
61
1.15
97828681--97828851
40
4.2
41
94
2
294
33
28
9
28
1.89
97828681--97828851
81
2.1
80
93
3
290
33
28
9
28
1.89
97832382--97832432
16
3.1
16
80
2
57
37
21
9
31
1.86
97833184--97833214
16
1.9
16
93
0
53
48
16
19
16
1.81
97843109--97843149
20
2.0
20
95
0
73
29
9
24
36
1.87
97846247--97846347
14
7.1
13
70
26
55
26
9
0
62
1.33
97846275--97846378
43
2.4
43
77
6
104
27
10
0
61
1.29
97846478--97846634
3
52.7
3
74
16
123
30
3
1
64
1.19
97846808--97846836
2
14.5
2
100
0
58
48
0
0
51
1.00
97858913--97859019
54
2.0
54
90
3
171
41
23
23
12
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97865832--97865985
36
4.3
36
82
4
152
12
11
36
38
1.80
97866775--97866830
20
2.8
20
88
0
76
48
0
30
21
1.51
97869560--97869584
13
1.9
13
100
0
50
40
24
16
20
1.91
97869452--97869677
113
2.0
114
96
0
418
29
19
14
36
1.91
97870070--97870113
22
2.0
22
95
0
79
22
4
34
38
1.75
97874676--97874745
24
2.9
24
89
0
104
34
32
11
21
1.89
97884688--97884727
21
2.0
19
85
9
53
35
2
2
60
1.24
97885258--97885297
19
2.2
20
78
17
50
35
0
0
65
0.93
97886408--97886489
42
1.9
44
85
7
116
57
4
23
14
1.57
97887605--97887639
15
2.3
15
100
0
70
22
22
37
17
1.94
97887735--97887791
27
2.1
27
87
6
80
10
10
40
38
1.74
97887806--97887863
27
2.1
27
80
0
62
17
13
36
32
1.89
97887825--97887885
27
2.3
27
88
0
86
14
18
36
31
1.91
97896143--97896186
20
2.2
20
83
0
52
15
2
18
63
1.41
97901927--97901975
21
2.3
22
82
10
57
26
4
0
69
1.06
97902932--97903004
34
2.2
34
97
2
139
38
21
5
34
1.77
97907189--97907241
21
2.5
21
84
0
61
32
9
30
28
1.88
97907867--97907901
18
1.9
18
94
0
61
31
17
17
34
1.93
97907981--97908049
29
2.3
29
85
5
84
49
14
14
21
1.79
97911753--97911782
7
4.3
7
100
0
60
43
0
13
43
1.43
97923699--97923749
18
2.8
18
73
5
50
17
21
17
43
1.88
97923895--97923973
18
4.4
18
76
9
72
37
12
13
35
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97928079--97928229
53
2.8
53
89
4
214
29
27
16
25
1.97
97932542--97932570
5
5.8
5
100
0
58
62
0
0
37
0.96
97934556--97934611
22
2.5
22
85
0
76
23
30
28
17
1.97
97940689--97940729
14
3.1
14
75
13
50
60
0
2
36
1.10
97940729--97940774
17
2.6
19
78
21
55
73
0
15
10
1.08
97942688--97942743
22
2.5
22
85
0
76
23
30
28
17
1.97
97948844--97948872
5
5.8
5
100
0
58
62
0
0
37
0.96
97948864--97948914
17
2.8
19
75
21
56
72
0
13
13
1.12
97950859--97950914
22
2.5
22
85
0
76
23
30
28
17
1.97
97957053--97957081
5
5.8
5
100
0
58
62
0
0
37
0.96
97957073--97957123
17
2.8
19
75
21
56
72
0
13
13
1.12
97959065--97959120
22
2.5
22
85
0
76
23
30
28
17
1.97
97963659--97963696
20
2.0
20
85
14
55
42
5
0
52
1.24
97964868--97964946
39
2.0
39
100
0
158
43
5
12
39
1.65
97966183--97966220
2
19.0
2
94
0
67
52
0
47
0
1.00
97967790--97967814
3
8.3
3
100
0
50
0
0
64
36
0.94
97972749--97972798
16
3.1
15
81
18
57
34
2
2
62
1.18
97973242--97973294
28
1.9
28
84
3
72
28
5
7
58
1.48
97975498--97975569
19
3.7
19
83
7
83
56
5
0
37
1.22
97975499--97975560
20
3.2
19
86
6
72
58
4
0
37
1.20
97975519--97975575
19
3.1
19
76
16
57
54
3
0
42
1.17
97975582--97975636
10
5.4
10
77
2
56
67
3
3
25
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97976881--97976941
24
2.5
24
76
7
61
60
0
1
37
1.07
97977057--97977108
15
3.3
15
80
17
61
67
1
7
23
1.27
97978811--97978878
31
2.2
32
91
2
111
60
1
5
32
1.30
97979895--97980239
172
2.0
172
98
0
663
30
9
18
41
1.82
97993295--97993362
10
7.0
10
76
17
72
64
0
0
35
0.94
97994174--97994361
103
1.8
105
88
5
294
59
3
1
36
1.21
97994274--97994339
19
3.6
20
71
24
56
54
1
3
40
1.25
97994184--97994315
8
15.6
8
68
26
69
58
2
0
38
1.16
97994611--97994637
7
3.9
7
100
0
54
85
0
0
14
0.61
97994765--97994828
19
3.3
19
74
16
60
35
0
3
60
1.12
97994766--97994823
30
1.9
30
82
0
71
34
0
3
62
1.12
97994910--97994951
17
2.3
18
84
12
50
21
2
2
73
1.06
97994910--97994951
10
4.6
9
82
14
50
21
2
2
73
1.06
97995368--97995413
19
2.3
20
81
3
58
47
4
2
45
1.34
97995355--97995422
15
4.4
16
75
14
63
44
5
1
48
1.36
97995403--97995441
13
2.9
13
88
11
53
35
2
0
61
1.10
97996822--97997014
105
1.9
100
82
7
244
26
25
15
31
1.96
97997137--97997180
24
1.9
24
86
9
65
47
13
0
38
1.43
97998442--97998474
17
2.0
17
88
5
50
39
0
0
60
0.97
98008271--98008302
5
6.6
5
92
7
57
81
0
0
18
0.70
98008272--98008302
9
3.3
9
95
4
53
80
0
0
19
0.71
98012434--98012521
44
2.0
44
97
0
167
30
12
13
43
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
98025669--98025720
21
2.5
21
74
0
59
61
0
7
30
1.24
98032261--98032304
15
2.9
15
77
12
54
40
9
22
27
1.84
98032756--98032818
26
2.2
30
83
13
89
58
0
0
41
0.98
98033491--98033564
29
2.6
29
76
8
71
29
1
1
67
1.07
98034349--98034388
21
2.0
20
85
5
53
47
5
0
47
1.24
98034516--98034588
20
3.6
20
73
14
51
36
4
2
56
1.33
98041786--98041883
38
2.6
38
79
9
119
38
16
15
29
1.89
98041874--98041920
16
2.9
16
100
0
94
25
19
17
38
1.92
98043719--98043753
13
2.6
14
90
4
54
42
2
0
54
1.15
98059861--98059902
6
7.0
6
81
10
50
50
2
28
19
1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333