genome.fa.s3.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  118  of  333  ( 39894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38154291--38154437	6	23.8	6	69	18	88	18	18	14	48	1.82
38154261--38154336	37	2.1	37	87	0	107	22	18	11	47	1.81
38154323--38154416	19	4.7	20	70	21	63	18	18	15	47	1.82
38154232--38154434	62	3.3	61	79	7	194	21	18	12	48	1.80
38154331--38154413	37	2.2	38	82	2	96	19	18	15	46	1.83
38154291--38154383	25	3.7	25	85	0	123	20	19	13	46	1.84
38154232--38154416	87	2.1	87	86	0	262	21	18	12	47	1.81
38154348--38154428	37	2.2	37	86	0	108	17	17	14	50	1.78
38159429--38159470	21	2.0	22	85	4	59	23	0	19	57	1.41
38159945--38160044	52	1.9	52	91	0	164	35	3	20	42	1.67
38159945--38160033	28	3.3	27	71	17	78	35	2	20	41	1.65
38160457--38160515	29	2.0	31	80	12	70	38	0	20	40	1.53
38180561--38180620	27	2.3	27	79	2	68	41	20	20	18	1.90
38180760--38180924	27	6.2	27	85	6	212	25	21	18	33	1.96
38180760--38180924	78	2.1	78	86	5	224	25	21	18	33	1.96
38180786--38180988	105	1.9	105	83	0	262	26	20	19	33	1.96
38180786--38180988	27	7.6	27	83	5	207	26	20	19	33	1.96
38180891--38181006	27	4.3	27	79	4	126	30	15	17	37	1.91
38189683--38189850	46	3.6	46	75	16	184	23	19	27	29	1.98
38189735--38189897	47	3.5	47	74	17	185	23	19	29	27	1.98
38189679--38189905	93	2.4	93	91	0	364	23	18	29	28	1.98
38196321--38196454	43	3.1	43	79	1	160	33	23	16	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38197152--38197188	14	2.7	14	87	4	58	48	13	2	35	1.57
38201720--38201951	49	4.7	49	81	3	284	28	27	19	25	1.99
38213423--38213686	53	4.9	54	80	9	279	23	24	17	35	1.95
38213437--38213686	108	2.3	110	90	5	393	22	24	17	35	1.95
38217142--38217304	9	18.1	9	73	16	108	34	0	17	47	1.53
38217165--38217283	36	3.3	34	89	7	166	35	0	15	48	1.51
38217165--38217295	38	3.6	38	89	6	161	34	0	16	48	1.51
38217198--38217347	47	3.2	47	84	9	157	34	0	18	47	1.49
38217716--38217771	28	2.1	27	87	9	80	48	0	1	50	1.11
38220857--38220900	19	2.4	19	85	7	56	50	0	9	40	1.34
38223308--38223355	25	1.9	25	86	0	69	33	25	16	25	1.96
38223403--38223458	11	5.5	11	71	16	57	35	12	19	32	1.89
38223392--38223458	20	3.3	20	93	0	116	34	11	20	32	1.90
38223508--38223578	23	3.0	23	87	6	88	30	21	21	26	1.98
38223772--38223834	31	2.0	31	90	0	99	38	15	22	23	1.93
38226900--38227590	47	14.3	49	92	5	1115	32	8	28	29	1.87
38227295--38227370	22	3.3	22	64	10	62	30	11	28	28	1.92
38226879--38227590	192	3.7	192	93	3	1173	32	8	29	29	1.87
38227709--38227787	37	2.1	37	88	0	113	25	18	30	25	1.98
38229997--38230040	19	2.4	19	85	7	56	50	0	9	40	1.34
38231102--38231143	20	2.2	20	86	4	59	4	40	0	54	1.21
38232444--38232491	25	1.9	25	86	0	69	33	25	16	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38232538--38232594	11	5.5	11	68	16	50	35	14	21	29	1.92
38232528--38232594	20	3.3	20	89	0	98	34	13	22	29	1.92
38232644--38232737	23	4.0	24	89	9	140	28	21	22	27	1.99
38232932--38232992	31	2.0	31	90	0	95	34	16	24	24	1.95
38234147--38234198	26	2.0	25	96	3	95	59	0	0	40	0.97
38234642--38234765	40	3.1	39	79	9	108	29	14	16	38	1.89
38244921--38245049	46	2.8	46	92	0	204	20	21	27	29	1.98
38252699--38252873	88	2.0	87	87	5	257	52	12	12	24	1.72
38254207--38254375	48	3.6	49	77	10	140	26	14	28	30	1.95
38254256--38254404	42	3.4	42	84	5	136	25	16	28	30	1.96
38254304--38254411	42	2.6	42	87	0	144	26	15	28	28	1.96
38254325--38254511	90	2.1	90	77	2	196	28	18	26	26	1.98
38254580--38254620	21	1.9	22	85	5	57	41	0	31	26	1.56
38262401--38263044	319	2.0	319	89	1	977	30	16	21	31	1.95
38265073--38265238	48	3.4	49	80	5	151	27	17	28	26	1.98
38265212--38265324	42	2.7	42	88	0	181	26	15	28	29	1.96
38270491--38270690	27	7.4	27	87	0	283	25	21	19	34	1.96
38272412--38272587	46	3.8	45	76	11	178	30	25	19	24	1.98
38283434--38283518	41	2.1	41	88	4	127	32	29	21	16	1.95
38286558--38286688	45	2.9	45	86	4	176	38	21	17	22	1.93
38289230--38289326	50	1.9	52	89	4	153	32	14	13	39	1.85
38289238--38289346	52	2.1	50	83	3	128	35	15	12	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38304060--38304230	93	1.8	93	96	0	315	28	28	21	21	1.99
38304052--38304227	46	3.8	46	79	12	216	28	28	21	21	1.98
38304653--38304712	30	2.0	30	90	0	93	30	25	8	36	1.85
38314712--38314796	41	2.1	41	88	4	127	32	29	21	16	1.95
38317873--38318004	45	2.9	45	87	3	185	38	21	17	22	1.93
38320578--38320674	50	1.9	52	89	4	153	32	14	13	39	1.85
38320586--38320694	52	2.1	50	83	3	128	35	15	12	35	1.86
38326239--38326282	15	2.9	15	82	0	61	11	6	2	79	1.01
38327950--38328258	40	7.8	40	92	0	476	24	27	20	27	1.99
38327950--38328258	159	1.9	160	92	0	512	24	27	20	27	1.99
38336119--38336427	40	7.8	40	93	0	476	24	27	20	27	1.99
38336119--38336427	159	1.9	160	92	0	512	24	27	20	27	1.99
38338116--38338163	14	3.4	14	85	0	60	43	6	31	18	1.75
38341908--38341960	23	2.4	22	76	20	56	9	18	1	69	1.25
38346749--38346845	30	3.2	29	71	8	79	28	27	15	27	1.96
38348976--38349019	22	2.0	22	90	0	70	34	2	36	27	1.70
38356209--38356256	15	3.3	15	73	5	53	29	0	27	43	1.55
38356203--38356246	14	3.1	14	74	6	52	27	0	34	38	1.57
38356203--38356262	29	2.1	29	93	0	102	28	0	30	41	1.56
38356897--38356941	14	3.3	14	81	6	56	46	13	0	40	1.43
38356924--38357029	42	2.5	42	98	1	203	39	14	12	33	1.83
38357476--38357502	10	2.7	10	100	0	54	18	11	29	40	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38357929--38357963	17	2.0	17	88	5	52	31	8	5	54	1.54
38358560--38358604	18	2.3	20	82	17	60	46	11	13	28	1.77
38359321--38359355	10	3.5	10	88	0	52	37	22	25	14	1.92
38359318--38359365	20	2.4	20	75	0	60	31	18	29	20	1.97
38359347--38359395	20	2.5	20	77	16	57	30	14	36	18	1.90
38361858--38361900	22	2.0	22	86	9	61	37	18	11	32	1.87
38366680--38366727	20	2.4	20	71	0	51	31	16	29	22	1.96
38366709--38366757	20	2.5	20	77	16	57	30	14	36	18	1.90
38368314--38368352	18	2.1	19	85	4	53	7	23	2	66	1.30
38368370--38368417	16	2.9	16	84	6	60	12	29	0	58	1.35
38368429--38368517	42	2.1	42	93	0	151	14	23	5	56	1.60
38368428--38368495	21	3.2	21	65	8	57	11	22	7	58	1.57
38370940--38370987	20	2.4	20	75	0	60	31	14	29	25	1.95
38377071--38377191	50	2.4	52	85	2	174	38	13	15	33	1.86
38377210--38377335	39	3.2	39	86	2	171	42	15	10	31	1.80
38379016--38379054	20	1.9	20	84	5	51	7	23	0	69	1.14
38382071--38382397	43	7.6	43	92	0	528	30	33	24	11	1.91
38382390--38382497	38	2.8	38	85	0	144	26	27	23	22	1.99
38386806--38386932	29	4.4	29	92	1	211	27	30	16	25	1.97
38386806--38386949	58	2.5	58	85	6	206	27	31	15	24	1.96
38389120--38389278	50	3.1	51	76	6	153	40	12	13	33	1.83
38389291--38389371	39	2.1	39	90	0	126	48	12	9	29	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38389931--38389955	11	2.3	11	100	0	50	68	16	8	8	1.38
38390409--38390526	55	2.1	55	83	6	150	25	22	13	38	1.91
38391150--38391204	20	2.8	20	88	0	83	29	16	29	25	1.97
38392092--38392121	16	1.9	15	93	6	51	43	33	3	20	1.68
38393562--38393591	8	3.6	8	91	8	51	0	13	0	86	0.57
38393563--38393591	9	3.3	9	90	9	51	0	10	0	89	0.48
38393600--38393644	12	3.5	13	81	9	56	4	11	2	82	0.91
38394312--38394336	11	2.3	11	100	0	50	68	16	8	8	1.38
38394790--38394907	55	2.1	55	84	6	159	25	22	13	38	1.90
38395531--38395585	20	2.8	20	88	0	83	29	16	29	25	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333