genome.fa.s3.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  137  of  333  ( 39894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44698721--44698946	100	2.3	99	85	5	296	30	26	16	25	1.97
44699194--44699247	27	2.0	27	85	0	72	38	14	7	38	1.75
44699399--44699557	80	2.0	80	91	0	255	24	18	11	44	1.84
44702150--44702226	38	2.0	38	97	0	145	48	16	9	25	1.76
44704765--44705003	49	4.8	49	79	5	255	30	25	17	27	1.97
44704779--44705009	100	2.3	98	83	5	277	30	25	17	26	1.97
44705257--44705310	27	2.0	27	85	0	72	38	14	7	38	1.75
44705460--44705622	80	2.0	80	94	2	283	23	20	12	42	1.86
44706717--44706761	23	2.0	23	91	4	74	46	17	4	31	1.68
44706743--44706793	19	2.9	17	83	11	66	35	17	9	37	1.83
44706714--44706771	22	2.6	22	86	7	82	43	18	3	34	1.68
44706727--44706784	19	2.8	20	84	10	64	39	17	6	36	1.76
44711838--44711882	23	2.0	23	86	4	65	48	17	2	31	1.59
44711864--44711908	19	2.5	17	80	13	54	35	20	4	40	1.72
44711835--44711892	22	2.6	22	84	7	73	44	18	1	34	1.60
44714367--44714400	15	2.5	13	90	9	50	44	0	0	55	0.99
44719953--44719987	10	3.4	10	92	4	52	57	2	0	40	1.14
44724901--44725164	45	5.9	45	93	0	420	25	19	15	39	1.91
44731316--44731579	45	5.9	45	93	0	420	25	19	15	39	1.91
44732555--44732659	41	2.6	40	80	7	113	32	18	25	23	1.97
44732593--44732783	40	4.5	40	72	19	143	32	17	23	25	1.97
44732689--44732796	40	2.7	40	76	11	114	31	19	23	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44733378--44733526	49	3.0	49	98	0	280	38	8	4	48	1.55
44733586--44733654	30	2.3	31	79	2	77	47	10	4	37	1.57
44734103--44734165	7	8.7	7	89	6	99	74	0	0	25	0.82
44734077--44734159	29	2.6	32	81	18	102	69	1	1	27	1.03
44734224--44734254	16	1.9	16	100	0	62	67	6	0	25	1.14
44736916--44736958	19	2.3	19	88	8	61	37	0	6	55	1.27
44738718--44738799	42	2.0	42	87	4	121	23	17	32	26	1.96
44738789--44738897	43	2.5	43	88	4	148	23	24	21	30	1.99
44744028--44744059	17	1.9	16	93	6	55	25	31	31	12	1.92
44748209--44748238	15	1.9	16	93	6	53	40	26	0	33	1.57
44749602--44749774	46	3.7	46	78	10	199	22	20	27	29	1.99
44749599--44749769	93	1.8	93	92	0	288	22	21	28	28	1.99
44756948--44757073	46	2.7	46	90	0	198	22	20	26	30	1.98
44774790--44774915	46	2.7	46	90	0	198	22	20	26	30	1.98
44783966--44784109	40	3.6	40	91	2	229	23	23	25	27	2.00
44785558--44785717	41	3.8	42	79	8	157	30	22	15	31	1.95
44788759--44788903	74	1.9	75	97	1	274	45	22	4	26	1.72
44790912--44790970	24	2.5	24	81	8	68	67	1	1	28	1.10
44790934--44790994	32	1.9	31	83	3	77	67	0	3	29	1.07
44790912--44790971	23	2.6	23	79	10	68	66	1	1	30	1.11
44791018--44791087	35	2.0	35	84	15	92	62	1	2	32	1.18
44791182--44791237	26	2.2	25	87	3	85	66	1	1	30	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44791516--44791591	29	2.6	30	75	12	77	31	3	0	64	1.12
44791754--44791838	30	2.8	30	76	3	89	38	0	2	58	1.11
44791757--44791823	11	6.4	11	76	13	54	34	0	1	64	1.03
44796537--44796743	109	1.9	109	86	4	292	33	21	15	29	1.94
44820476--44820521	25	1.9	24	82	8	58	43	13	13	30	1.81
44823443--44823568	46	2.7	46	90	0	198	22	20	26	30	1.98
44832614--44832757	40	3.6	40	91	2	229	23	23	25	27	2.00
44834249--44834371	42	2.9	42	86	1	165	30	23	15	30	1.95
44837415--44837560	75	1.9	75	98	0	283	45	22	4	26	1.72
44839519--44839602	10	8.1	10	73	12	53	61	1	2	34	1.16
44839584--44839617	16	2.2	16	89	5	52	67	0	2	29	1.05
44839833--44839889	27	2.2	26	84	6	80	66	1	1	29	1.12
44840413--44840475	28	2.2	29	83	5	76	36	0	3	60	1.13
44850893--44850931	19	2.1	19	95	0	69	25	33	5	35	1.78
44863687--44863767	37	2.2	37	90	0	126	40	29	12	17	1.86
44872508--44872563	20	2.8	20	83	2	69	35	23	14	26	1.93
44874846--44874870	3	8.3	3	100	0	50	64	0	0	36	0.94
44882526--44882678	43	3.6	43	90	0	227	26	20	30	22	1.98
44890723--44890759	18	2.1	19	90	10	60	32	27	10	29	1.90
44897228--44897495	48	5.7	47	82	5	274	29	19	27	24	1.98
44897228--44897495	94	2.8	94	81	10	280	29	19	27	24	1.98
44897231--44897495	142	1.9	143	83	2	354	29	18	27	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44904349--44904385	18	2.1	19	90	10	60	35	27	8	29	1.85
44907138--44907331	47	4.1	47	87	0	262	32	10	29	26	1.90
44907301--44907483	48	3.8	48	89	2	296	35	6	26	31	1.82
44907629--44907773	37	3.9	37	89	1	229	23	18	29	28	1.98
44909045--44909433	40	9.7	40	88	0	562	25	21	26	26	1.99
44912676--44912848	46	3.7	46	80	10	217	21	21	27	28	1.99
44912673--44912843	93	1.8	93	94	0	306	21	21	28	28	1.99
44916177--44916367	47	4.1	47	86	0	256	31	11	30	26	1.91
44916341--44916534	98	2.0	96	89	4	300	34	7	28	29	1.85
44916340--44916524	48	3.8	48	87	5	282	35	7	27	30	1.83
44916670--44916814	37	3.9	37	93	0	247	22	17	31	28	1.97
44937730--44937792	26	2.4	26	81	7	74	34	26	11	26	1.90
44938094--44938138	20	2.3	20	88	3	65	28	15	26	28	1.96
44938167--44938271	28	3.6	28	68	20	79	25	20	29	24	1.99
44938159--44938303	61	2.4	61	83	8	179	26	18	27	27	1.98
44942423--44942455	17	1.9	17	100	0	66	60	0	24	15	1.35
44942595--44942655	26	2.4	26	86	8	81	44	9	11	34	1.74
44945952--44945991	19	2.1	19	85	0	53	42	12	10	35	1.76
44948534--44948863	48	6.9	48	80	2	313	26	28	18	26	1.98
44948580--44948863	144	2.0	144	85	0	388	26	29	16	26	1.97
44951260--44951301	21	2.0	22	86	13	61	35	26	2	35	1.70
44955073--44955691	47	13.1	47	94	1	995	31	8	30	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44955073--44955691	284	2.2	284	93	0	1053	31	8	30	29	1.87
44955810--44955888	37	2.1	37	88	4	115	25	18	30	25	1.98
44959835--44959870	3	12.3	3	88	5	56	0	30	0	69	0.89
44961276--44961377	30	3.2	30	76	18	84	51	3	0	43	1.26
44990533--44990573	6	6.8	6	100	0	82	48	17	17	17	1.81
44990596--44990621	13	2.0	13	100	0	52	38	15	23	23	1.92
44990553--44990655	46	2.2	45	86	10	138	42	19	16	21	1.89
44998041--44998256	39	5.6	39	81	13	195	24	26	23	25	2.00
44998041--44998184	73	2.0	73	86	6	204	25	25	23	25	2.00
45005966--45006167	39	5.3	39	87	5	277	24	28	20	26	1.99
45005966--45006170	38	5.3	38	89	5	297	23	28	21	26	1.99
45005960--45006184	77	2.9	75	86	5	299	23	28	21	27	1.99
45013743--45013924	28	6.5	28	96	0	303	32	28	12	26	1.93
45016821--45016850	9	3.3	9	100	0	60	60	10	10	20	1.57
45019507--45019556	20	2.5	20	86	0	82	32	8	26	34	1.85
45020742--45020887	65	2.2	65	95	0	256	44	30	8	16	1.77
45021604--45021685	34	2.4	35	83	6	105	20	23	26	29	1.99
45031226--45031278	22	2.3	22	81	15	63	35	39	0	24	1.56
45032665--45032735	29	2.6	27	73	8	70	29	18	11	40	1.85
45034139--45034480	171	2.0	171	98	0	666	32	11	26	29	1.91
45036459--45036858	47	8.5	47	93	1	611	29	29	8	32	1.87
45044098--45044183	43	2.0	43	84	4	111	27	27	17	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45045722--45045840	43	2.8	43	80	3	134	20	17	31	30	1.96
45047669--45047740	36	2.0	36	100	0	144	38	13	13	33	1.85
45083325--45083586	40	6.6	40	86	3	307	27	27	19	25	1.99
45083325--45083586	119	2.2	119	82	4	305	27	27	19	25	1.99
45083328--45083586	79	3.3	80	86	3	265	26	28	20	25	1.99
45091270--45091531	40	6.6	40	87	3	316	26	27	20	24	1.99
45091270--45091531	119	2.2	119	83	4	323	26	27	20	24	1.99
45091273--45091531	79	3.3	80	86	3	274	26	28	20	24	1.99
45096541--45096643	51	2.0	51	92	0	170	30	19	23	27	1.98
45099660--45099709	25	2.0	25	100	0	100	44	12	12	32	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333