Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  326  of  333  ( 39894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105836651--105836690
3
13.3
3
100
0
80
32
0
0
67
0.91
105840031--105840076
21
2.2
21
96
3
85
30
10
13
45
1.77
105843038--105843116
34
2.3
34
97
0
149
24
8
12
54
1.66
105845064--105845145
37
2.2
37
77
0
92
45
6
14
34
1.70
105849629--105849712
25
3.4
24
77
12
64
32
19
29
19
1.96
105849649--105849722
25
3.0
25
84
5
96
33
18
29
17
1.94
105851786--105851839
25
2.3
23
78
12
56
44
3
14
37
1.63
105852216--105852249
9
3.8
9
96
0
59
64
8
2
23
1.36
105852429--105852681
3
82.7
3
67
21
102
58
3
5
32
1.38
105852476--105852512
19
1.9
19
94
0
65
62
5
5
27
1.39
105852390--105852730
167
2.0
168
93
3
591
59
4
4
31
1.37
105852602--105852679
22
3.5
22
77
14
72
58
2
6
32
1.37
105852706--105852738
16
2.1
16
88
5
50
66
0
0
33
0.92
105859672--105859729
30
1.9
30
89
0
89
41
3
24
31
1.71
105859941--105859972
13
2.5
13
94
0
55
31
0
12
56
1.37
105860067--105860308
50
4.7
50
86
4
297
26
24
29
19
1.98
105860067--105860315
100
2.4
103
88
6
362
26
24
29
20
1.99
105865030--105865232
46
4.3
48
88
7
265
35
14
21
28
1.92
105864964--105865232
98
2.7
98
93
0
457
34
14
22
28
1.93
105865196--105865304
37
3.0
37
90
2
177
35
16
22
24
1.95
105870484--105870515
13
2.5
13
94
0
55
31
0
12
56
1.37
105870610--105870851
50
4.7
50
86
4
297
26
24
29
19
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105870610--105870859
100
2.4
103
88
6
364
26
24
29
20
1.99
105873292--105873338
22
2.1
23
88
4
69
4
21
4
70
1.22
105877142--105877490
80
4.3
80
87
2
470
38
30
4
26
1.76
105877366--105877603
114
2.1
113
86
2
336
40
26
4
28
1.76
105877479--105877765
80
3.6
77
81
7
295
39
28
4
27
1.77
105877297--105877683
194
2.0
192
83
5
494
39
27
4
28
1.76
105877222--105878147
274
3.3
272
85
5
1068
37
30
5
26
1.78
105877561--105878057
193
2.6
186
86
5
664
38
29
5
26
1.79
105877656--105877876
113
2.0
112
89
0
343
40
29
4
25
1.75
105877752--105877943
80
2.4
80
84
2
251
36
30
6
26
1.81
105877915--105877971
26
2.2
25
84
6
78
42
22
5
29
1.76
105877847--105878145
112
2.8
108
82
7
358
36
30
6
27
1.81
105881234--105881263
3
10.0
3
100
0
60
66
0
0
33
0.92
105882356--105882393
18
2.1
19
90
5
60
28
23
5
42
1.76
105884231--105884274
21
2.0
22
86
4
63
59
2
31
6
1.36
105903561--105903593
17
2.0
17
88
5
50
69
3
0
27
1.03
105915171--105915210
18
2.2
19
90
4
64
55
22
0
22
1.44
105916268--105916316
21
2.3
21
75
6
55
53
2
6
38
1.38
105921970--105922042
29
2.5
30
76
22
75
45
0
4
50
1.20
105922768--105922812
21
2.3
19
85
11
56
33
11
6
48
1.65
105922775--105922819
21
2.1
21
100
0
90
35
11
4
48
1.59
105924858--105925027
23
7.8
22
70
23
112
33
4
5
57
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105925022--105925129
51
2.1
52
80
10
125
37
7
4
50
1.51
105925024--105925139
25
4.7
25
76
5
103
35
6
6
51
1.53
105925201--105925240
21
2.0
21
90
5
64
35
10
2
52
1.48
105928820--105928860
21
2.0
21
85
0
55
17
19
48
14
1.81
105930448--105930535
45
2.0
45
95
0
158
40
13
13
31
1.84
105937092--105937127
16
2.2
17
95
5
65
61
11
2
25
1.43
105942465--105942513
21
2.3
21
83
10
64
6
12
14
67
1.40
105942477--105942522
21
2.2
21
84
7
58
6
13
13
67
1.41
105946022--105946065
6
7.3
6
94
0
70
4
68
11
15
1.36
105946009--105946065
18
3.2
18
87
5
71
7
64
8
19
1.44
105952417--105952476
31
1.9
31
83
6
77
43
5
3
48
1.41
105957602--105957673
36
2.0
36
94
0
126
16
47
4
31
1.66
105957778--105957830
21
2.5
22
81
9
74
37
41
13
7
1.72
105958130--105958161
16
2.0
16
93
0
55
12
15
18
53
1.73
105958239--105958329
45
2.0
45
93
0
155
34
14
12
39
1.83
105958329--105958403
38
2.0
37
87
5
107
33
9
9
48
1.68
105958394--105958474
42
1.9
42
90
7
128
33
18
8
39
1.81
105958511--105958585
38
2.0
37
87
5
107
33
9
9
48
1.68
105961035--105961077
22
2.0
22
86
4
61
34
0
11
53
1.37
105966699--105966812
9
12.2
9
68
14
52
35
2
15
46
1.60
105966713--105966790
30
2.6
30
95
0
138
37
3
14
44
1.63
105966776--105966807
16
2.0
16
93
0
55
34
0
15
50
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105969531--105969562
15
2.1
15
94
0
55
28
6
0
65
1.16
105969597--105969679
7
11.7
7
73
7
60
43
38
1
16
1.56
105975858--105976219
44
8.2
44
92
0
607
27
15
32
25
1.96
105977878--105977907
12
2.4
13
94
5
53
23
0
0
76
0.78
105979713--105980084
130
2.9
130
81
0
395
29
19
18
33
1.95
105983874--105983983
24
4.6
24
87
0
139
40
30
10
19
1.84
105990637--105990697
24
2.5
24
91
0
95
36
31
13
19
1.90
105990611--105990710
24
4.2
24
72
19
82
36
31
13
20
1.90
105999141--105999191
20
2.5
20
81
12
52
58
7
0
33
1.27
106024624--106024713
29
3.3
26
70
23
62
65
0
1
33
1.00
106024644--106024694
25
2.1
24
85
10
68
68
0
0
31
0.90
106024907--106024936
10
3.0
10
100
0
60
20
10
0
70
1.16
106032393--106032468
38
2.0
38
100
0
152
55
2
15
26
1.54
106032481--106032534
28
1.9
28
92
0
90
25
14
31
27
1.95
106039384--106039424
20
2.0
21
85
4
57
56
2
9
31
1.45
106041024--106041054
5
6.2
5
100
0
62
77
0
0
22
0.77
106047292--106047329
14
2.9
13
85
11
51
47
0
0
52
1.00
106049492--106049572
31
2.6
31
79
9
85
45
1
1
51
1.16
106052761--106052798
6
6.5
6
96
3
69
31
0
0
68
0.90
106062094--106062140
22
2.1
22
100
0
94
27
8
8
55
1.59
106064166--106064245
35
2.3
34
78
20
85
40
2
5
52
1.37
106064370--106064415
19
2.5
18
82
3
56
36
0
4
58
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106064527--106064581
21
2.6
21
88
8
85
29
38
9
23
1.85
106066547--106066605
28
2.1
29
83
3
75
37
16
3
42
1.66
106068826--106069043
107
2.0
110
87
6
320
33
22
14
29
1.93
106072868--106072900
17
2.0
17
88
5
50
45
27
9
18
1.79
106072878--106072919
14
2.8
16
78
14
52
45
23
4
26
1.73
106072988--106073026
19
2.0
20
85
9
55
15
7
12
64
1.49
106076913--106076961
21
2.3
20
83
10
62
8
10
14
67
1.42
106084351--106084417
33
2.0
33
100
0
134
31
17
8
41
1.81
106084354--106084427
33
2.2
33
92
0
121
36
16
6
40
1.75
106084467--106084517
28
1.9
27
88
11
79
60
1
9
27
1.39
106094267--106094326
32
1.9
32
89
3
95
40
8
6
45
1.61
106095412--106095453
14
3.0
14
80
13
59
0
9
4
85
0.72
106096490--106096537
24
1.9
26
84
16
66
35
0
6
58
1.23
106108027--106108588
75
7.5
75
85
4
663
31
17
20
30
1.95
106108023--106108709
149
4.5
148
79
9
667
30
17
19
32
1.95
106108029--106108537
224
2.3
221
85
3
642
31
17
19
31
1.95
106108547--106108711
87
1.9
87
82
5
208
27
18
19
34
1.95
106109978--106110021
11
3.9
11
76
5
52
0
34
0
65
0.93
106110908--106110955
24
1.9
26
84
16
66
35
0
6
58
1.23
106121383--106121410
14
2.0
14
100
0
56
21
0
28
50
1.49
106122646--106122798
52
2.9
51
84
6
182
26
15
27
30
1.96
106126285--106126326
21
2.0
22
85
4
59
33
9
4
52
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106128467--106128518
25
2.1
25
82
7
61
53
1
3
40
1.30
106128720--106129552
302
2.8
302
81
6
911
38
11
15
34
1.83
106130469--106130529
21
2.8
23
80
12
74
42
1
11
44
1.50
106135388--106135472
30
2.8
30
80
3
100
25
47
3
23
1.68
106135962--106136091
23
5.5
23
69
17
72
35
4
3
56
1.35
106135976--106136178
25
8.2
25
70
14
91
34
5
3
55
1.43
106136056--106136145
26
3.3
26
72
10
83
31
5
4
58
1.41
106136328--106136375
16
3.1
15
90
6
69
31
2
2
64
1.16
106136328--106136379
8
6.5
8
82
8
61
30
1
1
65
1.14
106144519--106144693
70
2.5
69
85
2
217
28
14
22
33
1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333