genome.fa.s3.2.7.7.80.10.50.1000.212.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  212  of  333  ( 39894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69580807--69581262	84	5.4	84	85	4	566	30	24	17	27	1.97
69580799--69581262	252	1.8	251	86	4	675	31	24	17	26	1.97
69583900--69583965	28	2.4	26	73	16	71	16	21	22	39	1.92
69599843--69599952	44	2.5	43	82	4	123	25	27	20	27	1.99
69603930--69603955	12	2.2	12	100	0	52	46	23	7	23	1.78
69610871--69610980	42	2.6	43	78	11	127	26	25	20	28	1.99
69612502--69612778	48	5.7	48	76	6	168	27	18	26	26	1.98
69620425--69620644	48	4.6	48	83	4	237	27	16	29	27	1.97
69620425--69620644	96	2.3	97	84	2	273	27	16	29	27	1.97
69620425--69620692	96	2.8	95	81	4	259	28	16	27	27	1.97
69620617--69620740	48	2.6	48	80	5	135	26	18	27	27	1.98
69622691--69622727	18	2.1	18	94	0	65	27	13	5	54	1.61
69629693--69629730	19	2.0	19	89	0	58	31	0	18	50	1.47
69631218--69631364	47	3.1	47	85	0	195	32	9	29	27	1.89
69631247--69631320	23	3.1	25	62	25	59	29	13	33	22	1.93
69631334--69631616	48	5.8	48	92	4	478	35	7	26	30	1.83
69631763--69631871	37	2.9	37	95	0	191	22	19	31	26	1.98
69633132--69633183	15	3.2	15	73	19	50	44	0	1	53	1.11
69633216--69633252	16	2.3	16	90	0	65	35	0	0	64	0.94
69633276--69633319	22	2.0	22	90	0	70	45	0	0	54	0.99
69633224--69633305	31	2.5	33	73	15	80	48	0	1	50	1.08
69639395--69639623	90	2.6	90	93	2	381	55	12	5	26	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69641798--69642040	56	4.4	56	80	8	266	30	11	15	42	1.83
69641887--69641984	50	2.0	50	89	0	151	32	10	14	42	1.79
69641840--69642043	106	1.9	106	88	2	311	31	11	14	42	1.82
69641946--69642079	56	2.4	57	81	7	150	31	11	13	43	1.80
69643910--69643942	17	2.1	16	88	11	50	30	0	0	69	0.88
69650625--69650802	27	6.6	27	85	3	214	26	14	28	30	1.95
69650626--69650781	82	1.9	81	89	3	242	26	14	28	30	1.95
69650622--69650802	82	2.2	81	84	2	238	27	14	27	30	1.95
69669469--69669525	16	3.6	16	95	0	87	29	0	36	33	1.58
69669771--69669805	18	2.0	17	88	5	52	54	0	0	45	0.99
69669905--69669946	15	2.7	16	82	14	52	52	2	0	45	1.13
69669658--69669971	154	2.0	156	95	1	569	44	3	5	46	1.41
69669914--69669955	15	2.9	15	82	10	52	52	0	0	47	1.00
69669903--69670199	120	2.5	121	90	6	462	50	5	2	41	1.39
69670024--69670075	15	3.6	15	80	12	56	53	1	0	44	1.11
69670001--69670091	44	2.1	43	81	6	103	53	3	2	40	1.29
69669943--69670126	59	3.1	59	65	21	148	49	7	2	41	1.42
69670160--69670198	17	2.5	15	80	15	51	51	0	5	43	1.24
69670165--69670198	17	2.0	17	94	0	59	50	0	5	44	1.26
69670231--69670424	92	2.1	92	88	5	277	46	4	4	44	1.41
69672826--69672853	12	2.3	12	100	0	56	35	25	25	14	1.93
69674304--69674354	24	2.1	24	100	0	102	33	7	23	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69674893--69674934	18	2.4	18	84	11	52	66	7	2	23	1.28
69674903--69674939	18	2.1	17	90	5	56	64	5	2	27	1.28
69675045--69675123	28	2.8	29	83	9	92	63	8	2	25	1.36
69679490--69679520	12	2.7	11	90	9	53	61	9	0	29	1.28
69690515--69690566	24	2.2	24	89	0	77	50	9	3	36	1.54
69694452--69694503	24	2.2	24	89	0	77	36	3	9	50	1.54
69705016--69705077	14	4.1	15	75	24	51	64	0	20	14	1.28
69705024--69705077	14	3.7	13	76	23	54	62	0	22	14	1.31
69705017--69705075	31	1.9	31	92	0	100	62	0	22	15	1.32
69715767--69715866	28	3.6	28	75	6	96	24	16	35	25	1.95
69716480--69716526	24	1.9	25	91	4	78	19	4	51	25	1.65
69723459--69723495	16	2.3	16	95	0	65	37	10	35	16	1.83
69726839--69726997	43	3.7	42	71	12	119	25	15	25	33	1.95
69734990--69735152	42	3.9	41	82	10	161	30	24	14	30	1.95
69734990--69735152	84	1.9	84	85	4	222	30	24	14	30	1.95
69748824--69749068	50	4.9	50	82	4	291	26	17	26	29	1.98
69755899--69755964	27	2.4	27	78	9	71	34	18	18	28	1.94
69756193--69756237	22	2.0	22	91	0	72	8	31	28	31	1.88
69781068--69781096	12	2.3	13	94	5	51	20	6	13	58	1.58
69783282--69783527	49	4.9	50	82	4	300	26	17	27	29	1.98
69790451--69790516	27	2.4	27	78	9	71	34	18	18	28	1.94
69790747--69790791	22	2.0	22	91	0	72	8	31	28	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69797205--69797257	18	2.9	18	91	0	79	43	13	22	20	1.86
69797576--69798057	27	18.0	27	86	1	556	42	18	14	24	1.88
69811688--69811776	34	2.6	34	82	12	101	25	21	29	23	1.99
69818334--69818388	23	2.3	23	93	3	92	18	14	20	47	1.83
69819578--69819643	34	1.9	34	84	0	87	25	19	27	27	1.99
69822652--69822678	13	2.1	13	100	0	54	14	33	37	14	1.88
69830279--69830438	43	3.8	42	78	10	182	28	29	18	23	1.98
69841168--69841196	14	2.0	15	93	6	51	51	20	0	27	1.47
69846485--69846842	48	7.7	48	69	11	185	28	20	25	25	1.99
69846595--69846842	96	2.7	89	78	11	250	28	19	26	25	1.99
69849312--69849481	41	4.1	41	74	18	140	27	28	22	21	1.99
69849314--69849461	41	3.6	41	78	10	142	27	28	22	21	1.99
69858056--69858186	47	2.8	48	87	2	176	33	28	15	22	1.94
69862791--69862973	40	4.6	40	93	1	278	25	28	23	22	1.99
69862791--69862973	79	2.3	80	90	0	278	25	28	23	22	1.99
69862791--69863011	40	5.6	38	81	8	194	26	28	22	22	1.99
69870842--69871088	40	6.2	40	87	3	295	25	28	22	23	1.99
69877699--69877732	17	1.9	18	88	5	52	50	5	2	41	1.42
69878977--69879092	43	2.7	43	77	4	128	31	27	16	24	1.96
69884975--69885036	26	2.4	26	100	0	124	54	0	16	29	1.42
69885756--69885784	14	2.0	15	93	6	51	24	0	20	55	1.44
69887183--69887262	40	2.0	40	95	0	142	33	11	20	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69901437--69901665	48	4.9	48	68	11	150	30	25	18	25	1.98
69907901--69908094	107	1.8	106	81	5	239	32	18	25	23	1.97
69924221--69924379	43	3.7	43	80	9	173	31	24	18	25	1.97
69924221--69924380	86	1.9	85	84	6	216	31	24	18	25	1.97
69928348--69928482	23	5.8	23	73	14	98	19	1	31	47	1.58
69936200--69936230	7	4.4	7	100	0	62	29	0	0	70	0.87
69938766--69938818	22	2.4	21	77	22	56	39	5	7	47	1.56
69938768--69938815	20	2.3	21	85	7	62	39	6	8	45	1.59
69940678--69940710	17	1.9	17	93	0	57	69	0	9	21	1.15
69942366--69942545	48	3.8	48	71	15	140	29	23	21	26	1.99
69946137--69947257	373	3.0	373	99	0	2188	38	11	19	30	1.87
69948205--69948249	21	2.2	21	84	4	56	24	11	2	62	1.40
69959979--69960049	20	3.5	20	77	7	81	47	12	11	28	1.76
69961260--69961339	28	2.9	28	83	9	101	30	31	16	22	1.96
69973306--69973344	17	2.3	17	86	0	51	46	15	17	20	1.84
69985989--69986096	27	4.0	26	89	7	144	35	22	23	19	1.96
69989449--69989478	15	2.0	15	93	0	51	40	13	16	30	1.87
69991838--69991890	26	2.0	26	100	0	106	33	7	35	22	1.83
69994868--69994913	18	2.5	18	89	3	65	43	0	34	21	1.53
70006657--70006831	46	3.8	46	75	10	176	29	30	20	20	1.97
70006664--70006836	93	1.9	93	90	0	274	28	30	20	20	1.97
70009174--70009304	19	6.9	19	68	6	77	28	12	14	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70009528--70009663	72	1.9	71	82	7	168	22	15	10	52	1.72
70010027--70010071	20	2.3	20	84	3	65	44	0	6	48	1.29
70010164--70010194	4	7.8	4	100	0	62	77	0	0	22	0.77
70013055--70013106	21	2.5	21	75	6	52	46	34	7	11	1.69
70013182--70013221	20	2.0	20	90	0	62	27	5	25	42	1.75
70013231--70013269	20	2.0	20	89	0	60	17	12	33	35	1.88
70023740--70023782	20	2.2	20	95	0	77	25	30	25	18	1.98
70039107--70039140	18	1.9	17	88	5	50	50	2	32	14	1.58
70041234--70041263	5	6.0	5	100	0	60	60	0	0	40	0.97
70046727--70046855	57	2.3	57	90	0	204	31	17	12	39	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333