genome.fa.s3.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  99  of  333  ( 39894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31564395--31564424	15	1.9	16	93	6	53	43	0	0	56	0.99
31567727--31567826	52	1.9	51	87	2	146	27	18	12	43	1.85
31571659--31571690	16	2.0	16	100	0	64	12	12	25	50	1.75
31571804--31572022	45	4.9	45	90	0	321	39	15	19	25	1.91
31571804--31572022	90	2.4	90	91	0	366	39	15	19	25	1.91
31572774--31572818	19	2.4	18	81	3	54	73	2	11	13	1.19
31575766--31575797	16	2.0	16	93	0	55	15	9	25	50	1.74
31575911--31576174	45	5.9	45	93	0	411	39	15	19	25	1.91
31589411--31589678	38	7.0	39	87	7	340	25	27	23	23	2.00
31589395--31589678	115	2.5	115	85	7	350	25	27	22	24	2.00
31589411--31589675	77	3.5	76	85	9	344	25	27	22	24	2.00
31597493--31597688	39	5.1	39	87	9	262	24	30	22	22	1.99
31597480--31597652	79	2.2	78	88	7	262	24	29	21	23	1.99
31605165--31605377	40	5.4	40	88	6	287	24	29	23	23	1.99
31607359--31607392	13	2.6	13	85	0	50	0	32	2	64	1.08
31609210--31609432	79	2.8	78	82	9	256	25	26	22	25	2.00
31609210--31609432	39	5.7	40	85	8	257	25	26	22	25	2.00
31615463--31615505	18	2.3	18	84	8	50	72	4	2	20	1.14
31620891--31620971	34	2.4	34	85	4	101	27	19	22	30	1.98
31621238--31621297	26	2.3	26	80	8	68	25	1	20	53	1.55
31623876--31623985	56	2.0	56	96	0	202	41	14	8	35	1.76
31625950--31626127	27	6.6	27	83	3	205	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31625951--31626106	82	1.9	81	88	3	233	26	15	28	29	1.96
31625947--31626127	82	2.2	81	83	2	229	27	15	27	29	1.96
31634097--31634274	27	6.6	27	83	3	205	26	15	28	29	1.96
31634098--31634253	82	1.9	81	88	3	233	26	15	28	29	1.96
31634094--31634274	82	2.2	81	83	2	229	27	15	27	29	1.96
31637045--31637103	20	3.0	20	74	0	55	50	18	16	13	1.77
31639947--31640004	29	2.0	29	100	0	116	31	17	17	34	1.93
31645847--31645908	28	2.2	28	97	0	115	19	19	17	43	1.88
31649338--31649594	40	6.5	40	88	2	324	26	28	22	22	1.99
31657521--31657742	40	5.6	40	89	2	313	26	28	22	21	1.99
31658296--31658358	31	2.0	31	100	0	126	49	19	3	28	1.63
31658296--31658343	15	3.1	15	72	16	53	45	18	4	31	1.68
31661657--31661711	27	2.0	27	85	0	74	25	21	14	38	1.92
31667069--31667251	49	3.7	49	85	2	233	25	19	26	29	1.98
31688670--31688707	8	4.9	8	87	6	60	86	0	2	10	0.66
31688670--31688707	15	2.4	16	95	4	69	86	0	2	10	0.66
31689304--31689349	24	1.9	24	86	0	65	15	10	0	73	1.08
31693357--31693435	37	2.1	37	90	0	122	25	31	18	24	1.98
31693554--31693935	47	8.1	47	95	0	674	28	30	8	32	1.88
31694696--31694774	37	2.1	37	90	0	122	25	31	18	24	1.98
31694893--31695202	47	6.6	47	91	1	485	30	29	7	32	1.85
31699582--31700111	290	1.8	290	92	0	909	33	10	18	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31700166--31700287	42	2.9	42	80	4	129	33	17	22	27	1.96
31707727--31707988	46	5.6	48	81	8	258	21	29	19	29	1.98
31707727--31707991	93	2.8	92	80	10	279	21	29	19	28	1.98
31710607--31710636	14	2.1	15	93	6	53	53	6	13	26	1.64
31717021--31717196	47	3.8	46	78	10	180	24	28	17	29	1.97
31717018--31717237	47	4.7	46	78	14	172	24	27	18	29	1.98
31717067--31717239	94	1.8	94	87	0	256	24	27	19	28	1.98
31724958--31726347	690	2.0	691	97	0	2595	33	19	11	35	1.88
31729460--31729605	40	3.7	40	84	7	181	26	27	22	23	2.00
31737477--31737569	40	2.3	40	90	3	143	27	27	20	23	1.99
31740536--31740573	20	1.9	20	84	10	51	31	13	15	39	1.86
31750972--31751104	51	2.6	51	96	0	239	30	18	11	39	1.86
31764723--31764842	56	2.1	56	98	0	231	45	9	23	22	1.81
31766298--31766896	47	12.6	47	93	2	848	33	9	29	27	1.88
31766747--31766868	22	5.3	22	62	21	61	33	11	29	25	1.91
31769181--31769360	40	4.5	39	78	12	163	26	21	26	25	2.00
31769332--31769531	40	5.0	40	86	0	238	26	22	26	25	2.00
31770799--31770918	56	2.1	56	98	0	231	45	9	23	22	1.81
31772363--31773008	47	13.6	47	93	2	924	33	8	29	28	1.88
31772363--31773008	96	6.8	94	92	2	924	33	8	29	28	1.88
31777023--31777166	42	3.4	41	79	7	121	34	25	15	25	1.95
31777044--31777166	44	2.9	40	76	11	120	33	26	16	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31784747--31784881	68	2.0	68	98	0	261	45	19	7	28	1.77
31785146--31785302	43	3.7	43	83	8	160	33	22	16	26	1.95
31785164--31785311	43	3.4	42	86	3	188	35	22	14	27	1.93
31791207--31791311	27	3.9	27	91	0	138	23	14	20	40	1.89
31791209--31791311	54	1.9	54	87	0	152	22	14	21	41	1.89
31795322--31795544	40	5.6	40	81	12	221	24	26	21	26	2.00
31795322--31795544	79	2.8	78	81	10	263	24	26	21	26	2.00
31795322--31795544	119	1.9	120	82	10	287	24	26	21	26	2.00
31802587--31802810	40	5.6	40	79	12	205	25	26	21	26	1.99
31802587--31802811	79	2.8	78	79	10	249	25	26	21	26	1.99
31803216--31803285	34	2.1	34	97	0	131	32	22	4	40	1.74
31807663--31807732	34	2.1	34	100	0	140	34	22	2	40	1.69
31812076--31812145	34	2.1	34	100	0	140	34	22	2	40	1.69
31816475--31816539	32	2.0	33	96	3	123	33	24	3	38	1.71
31820938--31821005	34	2.0	34	100	0	136	32	23	5	38	1.79
31828314--31828633	157	2.0	157	98	0	615	31	12	18	37	1.88
31834943--31835107	47	3.5	47	89	0	240	32	9	30	27	1.89
31837356--31837639	43	6.7	43	82	3	310	29	25	19	25	1.98
31838048--31838093	21	2.2	21	92	0	74	2	43	17	36	1.61
31842546--31842662	9	13.2	9	74	10	73	34	0	17	47	1.54
31842561--31842647	36	2.5	36	94	3	151	34	1	17	47	1.55
31843964--31844142	46	3.8	49	80	13	207	28	29	21	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31843971--31844142	93	1.8	93	92	0	290	27	29	21	21	1.99
31846527--31846576	15	3.4	15	86	2	66	60	12	18	10	1.59
31846538--31846585	15	3.2	15	79	5	53	56	14	16	12	1.68
31849509--31849680	93	1.8	93	93	0	299	28	29	20	21	1.98
31849502--31849677	46	3.8	46	81	10	214	29	28	20	21	1.98
31850968--31851022	27	2.0	27	96	0	101	38	0	12	49	1.41
31851346--31851392	14	3.3	14	87	3	67	48	0	0	51	1.00
31851184--31851828	177	3.7	175	82	10	786	50	5	9	34	1.58
31851523--31851583	15	4.3	13	76	15	50	52	0	0	47	1.00
31851524--31851575	14	3.4	16	76	15	65	48	0	0	51	1.00
31851526--31851585	29	2.1	29	96	0	111	50	0	0	50	1.00
31851535--31851583	15	3.3	15	82	5	73	55	0	0	44	0.99
31855974--31856057	43	1.9	44	85	7	118	30	5	27	35	1.81
31856661--31856802	7	19.7	7	72	16	112	47	37	2	12	1.56
31856698--31856802	37	2.9	34	79	14	104	49	35	2	12	1.55
31857231--31857347	41	2.9	41	87	2	155	19	18	20	41	1.91
31859162--31859292	39	3.3	39	91	5	194	24	26	22	25	2.00
31863982--31864019	18	2.1	18	90	9	60	57	2	5	34	1.35
31867212--31867245	17	2.0	17	100	0	68	29	5	23	41	1.78
31870645--31870747	41	2.5	42	84	6	129	31	29	15	24	1.96
31872116--31872385	48	5.6	48	84	1	310	28	30	16	24	1.96
31883757--31884003	50	4.9	50	78	3	262	26	17	27	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31883761--31883942	101	1.8	101	87	2	276	25	18	26	29	1.98
31887921--31888286	48	7.6	48	85	3	468	28	30	15	25	1.96
31890307--31890439	45	3.0	44	80	9	148	33	27	14	24	1.94
31891020--31891050	15	2.1	15	93	0	53	54	25	0	19	1.44
31893914--31893961	13	3.7	13	94	0	78	29	37	22	10	1.88
31894978--31895139	42	3.8	42	85	1	207	26	23	16	33	1.96
31894981--31895139	85	1.9	84	86	1	228	26	23	16	33	1.96
31902604--31902741	41	3.4	40	81	7	154	34	26	14	24	1.94
31906573--31906777	46	4.4	46	80	9	193	28	17	30	23	1.97
31906581--31906777	93	2.1	93	82	10	233	28	17	30	23	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333