genome.fa.s3.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  115  of  333  ( 39894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37179768--37180196	47	9.1	47	94	1	714	32	9	30	28	1.88
37180315--37180393	37	2.1	37	86	4	106	26	18	29	25	1.98
37183994--37184527	47	11.1	47	87	5	726	31	13	29	25	1.93
37183994--37184527	145	3.7	144	88	5	783	31	13	29	25	1.93
37184213--37184288	24	3.2	24	62	23	61	28	13	32	25	1.93
37184360--37184435	24	3.2	24	62	23	61	28	13	32	25	1.93
37184501--37184591	46	2.0	46	82	0	110	34	9	30	25	1.88
37184736--37184954	37	5.9	37	96	0	384	24	18	31	26	1.97
37193904--37193939	7	5.1	7	100	0	72	30	27	13	27	1.94
37195140--37195217	41	1.9	41	97	0	147	17	21	38	21	1.93
37200269--37200338	25	2.8	25	97	0	131	25	24	25	24	2.00
37200371--37200401	16	1.9	16	93	0	53	35	16	19	29	1.93
37200551--37200681	27	4.9	27	80	3	156	28	22	16	33	1.95
37200551--37200681	54	2.4	54	87	0	190	28	22	16	33	1.95
37200638--37200810	27	6.5	26	79	9	127	31	12	19	36	1.88
37200615--37200874	54	4.8	54	76	8	192	29	11	19	38	1.88
37200667--37200847	27	6.7	27	81	5	172	29	9	21	39	1.85
37200681--37200874	81	2.4	81	80	3	221	30	9	19	39	1.84
37200876--37201230	27	13.1	27	91	0	548	41	9	21	27	1.83
37203434--37203516	44	2.0	44	83	7	109	25	15	27	31	1.96
37208696--37208841	40	3.7	41	86	7	151	25	26	22	25	2.00
37216647--37216792	40	3.7	41	85	7	142	25	26	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37221464--37221707	80	3.0	80	86	4	323	22	22	28	27	1.99
37221464--37221707	120	2.0	120	87	4	350	22	22	28	27	1.99
37221464--37221682	40	5.5	40	91	1	332	22	22	28	26	1.99
37222679--37222715	18	2.1	18	100	0	74	32	18	10	37	1.86
37229514--37229711	40	4.9	40	90	2	274	23	22	27	26	1.99
37234806--37234886	26	3.2	26	79	10	96	43	14	19	22	1.88
37238671--37238854	79	2.3	82	82	7	227	24	21	27	26	1.99
37238671--37238854	40	4.6	40	83	6	223	24	21	27	26	1.99
37238723--37238887	79	2.1	79	83	6	201	26	20	27	26	1.99
37249932--37250022	24	3.9	24	75	13	73	30	17	21	29	1.96
37249970--37250022	22	2.3	23	81	9	56	30	18	20	30	1.97
37249932--37250055	46	2.7	46	79	6	133	30	16	22	29	1.96
37253548--37253626	37	2.1	37	90	0	122	25	31	18	24	1.98
37253745--37254388	47	13.4	47	89	3	883	29	28	8	32	1.87
37253796--37254388	145	4.1	141	90	5	925	30	28	8	32	1.86
37261731--37261809	22	3.3	24	78	8	90	31	17	24	26	1.97
37261738--37261842	22	4.6	22	75	12	86	35	18	20	26	1.95
37261731--37261853	23	5.3	23	70	14	74	32	18	21	26	1.97
37264866--37264992	46	2.8	46	86	2	166	20	30	20	28	1.98
37277114--37277139	12	2.2	12	100	0	52	50	7	0	42	1.31
37277620--37277794	27	6.4	27	82	3	181	26	15	28	29	1.96
37277621--37277776	82	1.9	81	85	3	215	26	16	28	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37277620--37277774	55	2.9	54	81	3	177	26	16	28	29	1.97
37277617--37277794	82	2.2	81	80	3	205	26	15	27	29	1.96
37283093--37283127	18	1.9	18	88	11	54	22	20	0	57	1.41
37291928--37292043	46	2.5	45	81	5	126	21	28	19	30	1.98
37296002--37296062	30	2.0	30	96	0	113	19	21	16	42	1.89
37297864--37297985	29	4.2	29	87	3	104	30	13	30	26	1.93
37297887--37297997	58	1.9	57	83	8	145	28	14	31	25	1.95
37297929--37298015	29	3.1	27	85	8	77	32	11	32	24	1.91
37307533--37307808	40	6.8	40	93	1	462	25	21	29	23	1.99
37309555--37309669	42	2.7	42	75	7	117	31	26	10	32	1.90
37313473--37313545	37	2.0	37	94	0	128	34	24	8	32	1.85
37317598--37317792	97	2.0	97	94	0	345	36	6	14	42	1.71
37318021--37318122	42	2.4	43	78	6	109	24	18	26	30	1.98
37321351--37321384	8	4.1	8	92	3	50	17	0	23	58	1.38
37330872--37331014	71	2.0	71	97	0	268	43	8	25	23	1.81
37331328--37331500	42	4.1	43	75	7	158	28	26	16	28	1.97
37331328--37331506	84	2.1	84	82	3	207	27	26	16	29	1.97
37334228--37334268	20	2.0	20	85	9	55	51	9	12	26	1.70
37341712--37341775	33	2.0	33	84	3	85	34	20	23	21	1.97
37346356--37346549	47	4.1	47	92	0	316	32	11	28	26	1.92
37346430--37346505	23	3.2	25	62	24	63	28	13	34	23	1.92
37346356--37346605	94	2.6	91	81	11	272	33	10	28	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37346754--37346825	37	1.9	37	88	0	108	20	18	31	29	1.96
37348519--37348687	84	2.0	84	100	0	338	26	30	11	30	1.92
37353236--37353296	31	1.9	32	86	3	88	32	19	26	21	1.97
37358758--37358923	42	4.0	42	76	7	167	31	24	15	29	1.95
37358750--37358922	84	2.1	84	82	2	204	31	24	14	29	1.95
37364115--37364357	40	6.1	40	90	1	328	24	29	24	21	1.99
37370052--37370138	39	2.2	39	87	0	120	21	21	29	26	1.99
37370052--37370148	39	2.5	39	84	1	106	22	22	28	25	1.99
37380960--37380984	12	2.1	12	100	0	50	8	0	0	92	0.40
37390537--37390748	40	5.3	40	81	5	243	25	25	23	25	2.00
37400804--37400968	84	2.0	84	82	2	206	27	24	17	30	1.97
37400804--37400956	42	3.6	42	80	6	184	26	24	18	30	1.98
37403229--37403288	30	2.0	30	86	0	84	28	25	10	36	1.88
37405375--37405404	15	2.0	15	93	0	51	23	0	0	76	0.78
37407260--37407373	27	4.2	27	88	3	151	19	24	20	35	1.95
37407259--37407373	55	2.1	54	87	6	162	19	24	20	36	1.95
37408648--37408696	20	2.5	19	93	6	80	38	12	30	18	1.87
37413573--37413662	42	2.1	42	91	0	144	23	31	26	18	1.98
37415055--37415175	41	2.9	41	78	3	125	33	23	16	26	1.96
37415967--37416230	45	6.0	45	90	3	385	26	26	22	24	2.00
37417058--37417194	25	5.5	25	89	0	184	48	9	12	29	1.72
37417064--37417194	50	2.6	50	92	0	208	49	9	10	29	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37434214--37434478	45	6.0	44	85	4	311	26	27	20	25	1.99
37434989--37435125	25	5.5	25	84	3	168	48	10	13	28	1.74
37434995--37435125	50	2.6	50	92	0	208	48	10	11	29	1.73
37440670--37440708	19	2.1	19	85	0	51	71	7	5	15	1.26
37441146--37441260	55	2.1	56	83	8	146	36	21	23	18	1.95
37441171--37441260	27	3.2	28	82	7	112	35	23	22	18	1.96
37441366--37441430	28	2.3	28	89	5	96	30	7	29	32	1.85
37443227--37443460	28	8.6	27	90	3	344	30	29	14	25	1.95
37443227--37443460	83	2.9	83	91	1	366	30	29	14	25	1.95
37443227--37443460	55	4.3	56	94	1	352	30	29	14	25	1.95
37451350--37451555	28	7.6	27	93	4	333	31	28	14	26	1.95
37451350--37451555	55	3.8	55	96	1	360	31	28	14	26	1.95
37451350--37451555	109	1.9	110	93	1	360	31	28	14	26	1.95
37462480--37462559	37	2.2	37	88	0	115	27	31	17	23	1.97
37462678--37463225	47	11.4	47	92	2	736	29	29	8	32	1.88
37466549--37466638	40	2.2	40	90	0	135	30	7	14	47	1.72
37469888--37469981	42	2.2	42	84	5	118	27	18	25	28	1.98
37477922--37478120	27	7.4	27	86	1	256	35	18	21	25	1.96
37478794--37478853	27	2.3	26	82	2	66	23	23	18	35	1.96
37494364--37494554	40	4.8	40	83	3	224	25	20	27	26	1.99
37496745--37496769	13	1.9	13	100	0	50	32	16	16	36	1.90
37498297--37498370	22	3.3	22	64	17	62	29	10	31	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37498280--37498680	47	8.6	47	91	3	648	32	7	29	29	1.86
37503389--37503465	39	2.0	39	94	0	136	36	6	11	45	1.67
37503392--37503454	20	3.2	20	65	13	58	39	6	12	41	1.69
37503392--37503483	39	2.4	38	87	7	123	38	6	10	44	1.65
37508674--37508726	27	2.0	27	82	14	65	26	15	30	28	1.96
37511651--37511828	85	2.1	84	98	1	347	37	8	27	26	1.85
37512992--37513136	40	3.7	40	80	9	138	24	21	28	26	1.99
37519597--37519774	84	2.1	85	98	1	349	38	8	27	25	1.85
37525363--37525409	21	2.2	22	84	3	60	14	31	34	19	1.92
37530993--37531247	40	6.5	40	86	4	306	25	29	23	22	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333