Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  273  of  333  ( 39894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90303549--90303608
27
2.3
26
82
2
66
36
20
21
21
1.95
90303954--90304185
27
8.6
27
84
0
275
24
20
18
36
1.95
90303950--90304182
81
2.9
81
87
0
304
25
21
18
35
1.95
90304217--90304510
27
10.9
26
81
6
148
32
8
19
39
1.82
90304217--90304501
81
3.5
81
83
1
250
32
8
19
38
1.83
90304277--90304510
27
8.7
27
84
0
252
32
7
19
40
1.80
90304221--90304510
54
5.4
54
83
1
287
31
8
20
39
1.82
90304278--90304510
81
2.9
81
88
0
331
32
7
19
40
1.80
90306486--90306593
6
17.7
6
71
14
78
46
13
20
19
1.84
90306495--90306593
37
2.7
37
90
0
144
46
13
21
19
1.83
90306735--90306794
27
2.3
26
82
2
66
36
20
21
21
1.95
90307129--90307377
27
9.3
27
83
4
288
24
22
18
34
1.96
90307132--90307369
107
2.2
107
87
2
343
24
22
18
34
1.96
90307398--90307729
81
4.1
81
84
1
371
30
9
21
39
1.85
90307417--90307729
27
11.6
27
84
2
335
29
9
21
39
1.85
90309048--90309100
26
2.0
26
96
0
97
43
9
7
39
1.65
90310986--90311030
20
2.2
20
88
0
63
48
2
13
35
1.54
90313295--90313472
27
6.6
27
84
3
205
29
28
15
26
1.96
90313316--90313471
82
1.9
81
88
3
233
29
28
15
26
1.96
90318252--90318334
43
1.9
43
85
4
114
26
16
24
32
1.96
90328259--90328314
24
2.3
24
90
0
85
23
16
42
17
1.88
90335530--90335569
13
3.1
13
100
0
80
15
37
32
15
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90336436--90336518
43
1.9
43
83
9
107
28
18
21
31
1.97
90337347--90337384
19
2.0
19
100
0
76
31
0
31
36
1.58
90342284--90342338
27
2.0
27
96
0
101
38
5
25
30
1.79
90342331--90342454
55
2.3
55
89
0
194
29
15
22
33
1.95
90362480--90362657
27
6.6
27
83
3
205
26
15
28
29
1.96
90362481--90362636
82
1.9
81
88
3
233
26
15
28
29
1.96
90362477--90362657
82
2.2
81
83
2
229
27
15
27
29
1.96
90373288--90373323
18
1.9
19
88
5
56
44
2
19
33
1.65
90378603--90378756
44
3.6
43
79
9
163
22
17
27
32
1.96
90378602--90378756
43
3.6
43
78
10
156
21
17
27
32
1.96
90384766--90384983
79
2.7
78
81
8
242
27
25
21
26
1.99
90384766--90384983
40
5.5
40
83
6
239
27
25
21
26
1.99
90392354--90392558
40
5.2
40
81
5
211
25
24
21
27
1.99
90396407--90396566
43
3.7
42
81
8
171
23
18
26
30
1.98
90398007--90398122
43
2.8
42
79
12
148
32
14
22
30
1.94
90398615--90398733
56
2.1
56
93
1
202
21
13
23
42
1.88
90398750--90398779
14
2.1
14
100
0
60
43
13
6
36
1.70
90403715--90403845
40
3.3
40
88
2
192
24
20
26
28
1.99
90403715--90403882
40
4.2
38
80
9
158
25
20
26
27
1.99
90406907--90406938
13
2.5
13
94
0
55
6
34
40
18
1.76
90409474--90409506
17
1.9
17
88
11
50
81
18
0
0
0.68
90410086--90410119
17
2.0
17
94
0
59
44
50
0
5
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90414725--90414758
17
2.0
17
94
0
59
44
50
0
5
1.26
90419289--90419323
14
2.4
14
85
4
52
37
0
0
62
0.95
90419500--90419549
17
3.1
17
88
8
70
36
2
20
42
1.63
90422264--90422304
3
14.7
3
85
10
52
70
0
29
0
0.87
90428314--90428364
21
2.4
21
70
6
50
25
25
23
25
2.00
90429344--90429380
18
2.1
17
90
5
56
48
2
8
40
1.47
90433158--90433286
64
2.0
64
95
0
231
32
31
17
19
1.94
90434140--90434213
25
3.0
25
78
4
78
37
20
21
20
1.94
90446636--90446678
21
2.0
21
95
0
77
27
0
37
34
1.57
90446659--90446691
16
2.1
16
94
0
57
33
0
36
30
1.58
90446670--90446764
45
2.1
44
88
1
136
34
5
27
32
1.79
90446925--90446959
18
2.0
17
88
5
52
54
0
0
45
0.99
90454967--90455009
20
2.2
20
82
0
50
9
13
23
53
1.69
90466384--90466451
4
17.5
4
72
22
56
0
19
0
80
0.70
90466383--90466448
12
5.7
11
84
8
87
0
18
0
81
0.68
90466384--90466448
23
2.8
23
97
2
121
0
18
0
81
0.69
90467025--90467151
63
2.0
63
86
3
175
27
18
26
26
1.98
90467863--90467907
22
2.0
22
91
0
72
15
17
17
48
1.81
90467865--90467918
22
2.5
22
81
0
63
20
18
12
48
1.81
90469474--90469589
61
1.9
58
86
8
162
49
3
3
43
1.36
90469574--90469621
25
1.9
25
83
8
62
52
0
2
45
1.12
90471625--90471799
27
6.4
27
82
3
172
29
28
14
27
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90471643--90471798
82
1.9
81
85
3
215
28
29
15
26
1.96
90471647--90471798
54
2.8
54
84
3
198
27
29
15
26
1.96
90478722--90478764
18
2.4
18
100
0
86
51
6
9
32
1.61
90479789--90479841
20
2.7
20
84
0
70
22
32
28
16
1.96
90487186--90487238
20
2.6
19
75
21
54
24
37
24
13
1.91
90495505--90495682
27
6.6
26
81
6
169
26
16
28
28
1.97
90495506--90495661
82
1.9
81
85
3
215
26
16
28
27
1.97
90495502--90495682
82
2.2
81
81
2
211
27
16
28
28
1.97
90495587--90495693
27
3.9
27
82
1
70
26
15
28
28
1.96
90503530--90503706
27
6.6
26
81
7
169
27
16
28
28
1.97
90503531--90503685
81
1.9
81
85
5
215
27
16
28
27
1.97
90503527--90503706
81
2.2
81
81
3
211
27
16
27
28
1.97
90503612--90503717
27
3.9
27
80
2
70
26
16
28
29
1.96
90510254--90510403
75
2.0
75
96
0
273
32
16
27
24
1.96
90518056--90518109
23
2.3
23
78
9
65
25
25
16
31
1.97
90524024--90524116
39
2.5
37
80
7
98
27
29
22
20
1.98
90524484--90524520
6
6.2
6
87
0
56
51
10
0
37
1.37
90524471--90524518
12
4.0
12
88
0
60
58
8
0
33
1.28
90524472--90524520
18
2.7
18
90
0
71
55
10
0
34
1.34
90525181--90525206
11
2.4
11
100
0
52
0
42
7
50
1.31
90525564--90525606
21
2.0
21
81
0
50
58
6
0
34
1.25
90538090--90538126
6
6.2
6
87
0
56
51
10
0
37
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90538077--90538124
12
4.0
12
88
0
60
58
8
0
33
1.28
90538078--90538126
18
2.7
18
90
0
71
55
10
0
34
1.34
90538786--90538811
11
2.4
11
100
0
52
0
42
7
50
1.31
90539169--90539211
21
2.0
21
81
0
50
58
6
0
34
1.25
90546313--90546373
29
2.1
29
93
0
104
39
4
9
45
1.59
90557374--90557521
3
48.7
3
64
15
54
26
9
2
62
1.37
90557292--90557424
35
3.8
33
71
11
88
29
10
0
59
1.36
90557482--90557532
26
2.0
26
88
7
77
31
5
0
62
1.19
90557481--90557539
15
3.8
17
75
18
58
28
6
0
64
1.19
90561812--90561896
37
2.2
39
82
12
97
40
3
3
52
1.36
90562980--90563007
2
14.0
2
100
0
56
50
0
0
50
1.00
90565527--90565637
50
2.2
49
81
9
127
20
4
3
71
1.19
90571535--90571793
68
3.9
64
77
14
242
30
16
28
24
1.97
90575241--90575312
36
2.0
36
91
0
117
40
13
9
36
1.78
90577181--90577211
16
1.9
16
93
0
53
16
9
3
70
1.26
90587054--90587128
24
3.1
24
77
7
80
24
18
32
25
1.97
90604535--90604589
29
1.9
29
85
10
78
21
43
20
14
1.87
90616931--90616958
14
2.0
14
100
0
56
71
0
0
28
0.86
90620044--90620069
13
2.0
13
100
0
52
23
30
0
46
1.53
90622440--90622497
28
2.1
28
100
0
116
18
25
20
34
1.96
90624129--90624178
21
2.5
20
83
3
64
36
2
4
58
1.29
90627146--90627194
20
2.5
20
86
0
71
20
8
2
69
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90633823--90633864
16
2.6
16
92
3
66
38
11
9
40
1.75
90636961--90637097
61
2.2
61
79
7
145
35
5
19
39
1.76
90638868--90638907
18
2.4
17
87
8
55
47
10
7
35
1.65
90638875--90638912
18
2.1
18
100
0
76
36
10
13
39
1.79
90659485--90659518
10
3.3
10
88
8
50
2
20
17
58
1.51
90662402--90662624
49
4.7
49
73
10
183
27
20
27
25
1.99
90665524--90665553
14
2.1
14
93
0
51
83
0
13
3
0.77
90665863--90665896
16
2.1
16
88
0
50
41
2
20
35
1.68
90669271--90669407
55
2.5
55
91
3
213
27
16
25
29
1.97
90672239--90672278
15
2.6
15
88
4
53
67
2
0
30
1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333