Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  110  of  333  ( 39894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35432601--35432631
16
1.9
16
93
0
53
9
29
19
41
1.83
35436173--35436263
29
3.2
29
89
6
125
28
32
15
23
1.95
35436486--35436516
16
1.9
16
93
0
53
16
22
12
48
1.80
35440071--35440135
29
2.3
29
89
2
96
29
33
15
21
1.94
35440063--35440136
28
2.6
28
84
2
103
29
32
14
22
1.94
35441149--35441187
5
7.8
5
94
0
69
79
17
2
0
0.84
35442340--35442512
90
1.9
90
85
2
240
38
15
19
26
1.92
35442644--35442988
171
2.0
173
89
2
534
37
10
13
39
1.78
35443553--35443589
10
3.7
10
92
7
58
59
16
2
21
1.49
35445362--35445413
21
2.5
21
87
6
70
38
19
3
38
1.70
35458477--35458521
23
2.0
23
91
4
74
40
17
4
37
1.70
35458464--35458521
22
2.6
22
84
12
75
41
18
3
36
1.68
35458493--35458543
19
2.9
17
83
11
66
35
17
9
37
1.83
35458477--35458534
19
2.8
20
84
10
64
39
17
6
36
1.76
35472544--35472731
94
2.0
94
95
0
340
32
14
16
35
1.90
35475704--35475887
49
3.8
49
80
6
203
22
29
20
27
1.99
35475712--35476025
94
3.3
94
79
6
274
24
28
18
28
1.98
35475712--35476025
46
6.6
46
75
7
238
24
28
18
28
1.98
35480684--35480729
23
2.0
24
82
4
58
54
26
2
17
1.54
35481290--35481420
44
3.0
41
82
10
138
35
23
18
22
1.96
35482509--35482535
13
2.1
13
100
0
54
48
22
0
29
1.51
35485408--35485581
49
3.6
48
75
9
147
28
18
28
24
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35488708--35489020
49
6.6
48
74
10
193
23
27
20
28
1.99
35488855--35489023
48
3.6
47
83
4
225
23
27
20
29
1.98
35495182--35495238
20
2.8
20
89
0
78
21
29
0
49
1.50
35496669--35496718
26
1.9
26
87
0
73
46
14
24
16
1.83
35498162--35498211
26
1.9
26
95
0
91
48
2
0
50
1.12
35498162--35498211
9
5.8
9
74
9
50
48
2
0
50
1.12
35504692--35504728
19
1.9
19
94
0
65
35
0
18
45
1.50
35504940--35505115
41
4.3
41
91
0
280
29
19
27
23
1.98
35504940--35505109
82
2.1
82
98
0
331
29
18
28
23
1.98
35512341--35512377
19
1.9
19
94
0
65
35
0
18
45
1.50
35512589--35512764
41
4.3
41
91
0
280
29
19
27
23
1.98
35512589--35512758
82
2.1
82
98
0
331
29
18
28
23
1.98
35520413--35520454
7
6.0
7
100
0
84
28
14
0
57
1.38
35520441--35520504
31
2.1
31
81
0
74
28
21
10
39
1.87
35520714--35520822
51
2.2
48
90
6
164
27
22
22
27
1.99
35520727--35520822
25
3.8
26
84
5
135
28
22
23
25
2.00
35520870--35520916
20
2.3
20
92
7
78
34
19
10
36
1.86
35531856--35531904
21
2.3
22
83
16
68
38
0
0
61
0.96
35546798--35547063
94
2.9
91
77
13
299
23
30
19
27
1.98
35546803--35547063
47
5.6
46
69
16
189
23
30
18
27
1.98
35553922--35554008
42
2.1
42
97
0
165
35
8
22
33
1.84
35556742--35556782
20
2.0
20
85
0
55
56
4
4
34
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35557904--35558057
30
4.8
30
81
13
191
25
49
3
21
1.64
35557923--35558004
39
2.1
39
97
0
155
28
51
2
18
1.59
35557931--35557992
18
3.3
18
67
20
54
25
48
3
22
1.66
35557904--35558034
69
1.9
69
93
0
226
25
48
3
22
1.65
35558535--35558663
23
5.5
23
66
21
65
34
4
2
58
1.32
35558593--35558703
57
1.9
58
83
3
143
34
6
2
56
1.39
35558549--35558669
25
5.0
25
72
8
72
36
4
2
57
1.31
35558609--35558718
27
4.1
27
70
16
75
34
5
3
56
1.40
35558689--35558747
25
2.5
24
78
10
68
33
8
6
50
1.59
35558705--35558753
25
2.0
25
91
0
80
34
8
6
51
1.57
35558903--35558942
7
5.4
7
88
5
53
30
2
2
65
1.19
35558908--35558954
16
2.9
16
87
12
69
29
0
2
68
1.02
35571204--35571730
73
6.9
73
76
12
429
27
16
20
34
1.95
35571477--35571505
14
2.1
14
100
0
58
13
13
6
65
1.45
35571276--35572216
239
4.0
239
92
3
1537
27
16
20
34
1.95
35571718--35571745
14
2.0
14
100
0
56
14
21
7
57
1.61
35571513--35572194
163
4.4
154
74
17
553
28
16
21
33
1.95
35571642--35571825
90
2.1
87
84
6
244
26
16
18
38
1.92
35571732--35572208
75
6.3
74
75
13
398
28
16
20
34
1.94
35571988--35572208
74
3.0
72
83
8
261
29
17
21
31
1.96
35571988--35572171
72
2.6
73
87
6
252
32
16
22
28
1.96
35572188--35572238
14
3.6
14
77
12
50
19
11
3
64
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35572202--35572235
16
2.1
16
88
0
50
17
8
2
70
1.25
35572115--35572322
104
2.0
104
83
3
267
21
15
17
44
1.86
35572926--35573097
30
5.8
30
93
1
292
25
49
3
22
1.65
35573586--35573666
23
3.6
23
74
12
62
35
4
2
56
1.34
35573759--35573807
25
2.0
25
87
0
71
32
8
8
51
1.61
35573959--35574006
16
3.1
15
90
6
69
31
2
2
64
1.16
35573959--35574010
8
6.5
8
82
8
61
30
1
1
65
1.14
35574670--35574725
19
3.1
19
68
19
55
53
7
7
32
1.55
35574737--35574850
55
2.1
55
86
6
160
42
0
33
22
1.60
35574814--35574847
17
1.9
18
88
5
52
32
0
38
29
1.58
35575692--35575736
20
2.2
21
84
4
56
62
6
2
28
1.33
35575708--35575764
30
1.9
29
89
10
89
63
3
0
33
1.12
35575740--35575805
19
3.4
18
76
17
62
59
0
3
37
1.13
35575738--35575823
20
4.3
20
76
8
77
61
1
2
34
1.16
35575732--35575823
10
9.3
10
73
11
64
63
2
2
32
1.19
35575851--35575910
19
3.0
20
78
4
77
60
3
3
33
1.30
35575796--35575910
20
5.5
20
68
17
81
59
3
4
33
1.34
35576091--35576222
9
14.4
9
71
19
87
28
1
2
67
1.12
35576091--35576179
10
9.2
10
70
14
62
30
1
2
66
1.11
35576091--35576222
19
7.2
18
70
16
85
28
1
2
67
1.12
35576090--35576222
27
4.9
27
75
18
107
29
1
2
66
1.12
35576091--35576210
10
12.7
10
69
17
60
30
1
2
65
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35577024--35577086
31
2.0
31
93
0
108
19
26
14
39
1.90
35579505--35579547
20
2.1
21
83
12
54
20
0
20
58
1.40
35583849--35583942
46
2.1
44
84
7
118
29
18
27
24
1.98
35585194--35585233
20
2.0
21
85
14
57
12
37
30
20
1.89
35593139--35593258
51
2.4
51
91
0
186
17
22
40
19
1.91
35594750--35594784
3
11.7
3
93
0
61
28
0
2
68
1.04
35595112--35595161
19
2.6
19
81
15
59
54
0
2
44
1.11
35595194--35595223
8
3.8
8
95
0
51
63
0
0
36
0.95
35602187--35602253
34
2.0
34
90
0
107
25
14
23
35
1.94
35603182--35603261
30
2.7
30
84
0
106
28
8
23
38
1.85
35606038--35606193
57
2.7
57
75
13
158
29
16
18
35
1.93
35608099--35608125
12
2.2
12
100
0
54
7
0
25
66
1.17
35609499--35609545
22
2.2
21
85
7
60
40
0
2
57
1.11
35609891--35610106
40
5.4
39
73
8
148
30
20
19
29
1.97
35610357--35610401
14
3.2
14
83
0
54
22
2
28
46
1.63
35610363--35610410
14
3.4
14
82
0
60
22
2
31
43
1.65
35610474--35610572
43
2.3
43
84
6
121
22
2
40
35
1.65
35610482--35610597
50
2.3
50
85
2
153
21
1
40
36
1.64
35610473--35610616
7
20.1
7
69
12
69
21
2
40
36
1.65
35611000--35611035
18
1.9
18
88
5
54
38
8
2
50
1.47
35611294--35611525
83
2.9
79
80
11
278
38
12
21
28
1.89
35611204--35611525
169
2.0
160
84
9
416
37
11
21
29
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35614874--35614902
14
2.1
14
93
6
51
34
0
10
55
1.34
35615511--35615603
47
2.0
47
97
0
177
19
5
24
50
1.68
35615653--35615761
44
2.5
44
90
3
166
37
15
16
30
1.90
35615740--35615837
42
2.3
43
89
1
144
20
22
25
31
1.98
35618101--35618126
9
2.9
9
100
0
52
0
0
19
80
0.71
35629499--35629599
38
2.7
38
84
4
107
42
11
22
22
1.86
35629528--35629599
37
1.9
38
88
2
110
45
11
22
20
1.82
35633271--35633371
20
5.1
19
75
13
96
40
21
26
10
1.86
35633251--35633373
60
2.0
62
84
6
162
38
21
26
13
1.91
35633271--35633371
40
2.5
39
81
7
114
40
21
26
10
1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333