genome.fa.s3.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  101  of  333  ( 39894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32289309--32289383	38	2.0	38	86	5	107	24	26	18	30	1.98
32291519--32291830	47	6.6	47	92	1	480	29	29	8	32	1.87
32296358--32296459	40	2.6	40	87	7	138	24	26	23	25	2.00
32304326--32304507	40	4.6	40	94	2	305	26	27	22	23	2.00
32305562--32305646	43	2.0	43	83	4	109	27	18	27	27	1.98
32318584--32318757	49	3.5	48	85	4	222	30	27	16	25	1.97
32318584--32318765	99	1.8	99	92	0	310	29	28	17	25	1.97
32321477--32321513	15	2.5	15	95	0	65	56	13	13	16	1.67
32324606--32324837	49	4.7	49	83	3	302	28	27	19	24	1.99
32326888--32326926	16	2.4	16	91	0	60	46	0	10	43	1.37
32327691--32327848	40	4.0	40	88	0	235	15	28	19	36	1.92
32327789--32327912	64	1.9	64	93	0	212	14	29	17	38	1.89
32327853--32327946	40	2.3	40	81	3	118	15	28	18	37	1.92
32327749--32327940	104	1.8	104	86	2	278	15	28	18	38	1.91
32334175--32334226	27	1.9	27	84	0	68	32	21	25	21	1.98
32334275--32334326	27	2.0	26	84	3	68	34	21	26	17	1.95
32338586--32338619	18	1.9	18	88	5	52	14	17	11	55	1.68
32343473--32343501	12	2.3	13	94	5	51	65	6	6	20	1.40
32345571--32345606	16	2.2	16	95	0	63	22	2	38	36	1.69
32352212--32352305	38	2.4	38	85	7	118	36	9	10	43	1.72
32352290--32352372	39	2.1	38	84	4	103	30	10	12	46	1.75
32354582--32354778	54	3.6	54	85	4	254	35	17	25	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32356128--32356224	10	9.5	10	72	18	76	64	0	2	32	1.05
32356139--32356187	8	6.4	8	76	23	52	69	0	0	30	0.89
32356128--32356224	19	4.8	19	76	18	81	64	0	2	32	1.05
32356139--32356224	9	9.9	9	73	19	67	65	0	2	32	1.06
32356175--32356228	23	2.4	23	84	6	67	61	0	3	35	1.14
32356192--32356247	22	2.5	22	83	13	71	60	0	3	35	1.14
32359299--32359520	40	5.6	40	91	1	340	22	21	26	29	1.99
32361463--32361559	30	3.2	30	70	2	88	29	16	26	26	1.97
32363738--32363768	12	2.6	12	100	0	62	25	16	12	45	1.83
32363829--32363878	6	8.2	6	81	16	50	2	20	2	76	0.99
32363818--32363888	37	1.9	37	86	11	101	2	18	2	76	1.04
32363814--32363874	16	3.8	16	77	14	63	3	19	1	75	1.03
32364804--32364835	11	2.6	13	90	9	50	3	12	3	81	0.93
32364800--32364859	12	5.1	12	78	17	56	8	10	6	75	1.20
32364828--32364865	12	3.2	12	92	3	60	13	2	7	76	1.11
32364940--32364987	12	3.8	12	84	15	69	8	4	6	81	0.98
32366594--32366690	30	3.2	30	70	2	88	29	16	26	26	1.97
32371984--32372319	47	7.4	47	85	7	424	33	8	30	27	1.87
32371984--32372319	94	3.7	94	84	8	469	33	8	30	27	1.87
32372182--32372254	36	2.0	36	91	0	119	36	10	30	21	1.88
32372137--32372309	83	2.1	84	87	2	249	36	9	28	24	1.88
32374173--32374484	40	7.8	40	91	0	482	21	23	30	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32378423--32378946	47	11.4	47	86	5	696	34	8	29	27	1.87
32378809--32378881	36	2.0	36	92	5	121	36	10	30	21	1.88
32378764--32378936	83	2.1	84	86	6	244	36	9	28	24	1.87
32385322--32385503	40	4.6	40	92	2	296	23	23	26	27	2.00
32391267--32391481	54	4.0	54	81	2	225	37	15	25	21	1.93
32391272--32391460	55	3.5	54	82	3	220	35	16	25	21	1.94
32392588--32392630	21	2.0	21	95	0	77	46	13	13	25	1.81
32407882--32408102	40	5.6	40	84	4	279	26	26	22	24	2.00
32414933--32415041	42	2.6	41	79	4	128	30	12	26	30	1.93
32418015--32418199	79	2.3	81	83	7	227	24	22	27	24	2.00
32418016--32418199	40	4.6	40	82	9	207	25	22	27	24	2.00
32418068--32418232	79	2.1	79	83	6	201	26	21	27	24	1.99
32421746--32421854	37	2.9	37	91	0	173	26	31	18	23	1.97
32422000--32422183	48	3.8	48	88	4	271	29	26	7	36	1.84
32422000--32422183	98	1.9	98	88	4	284	29	26	7	36	1.84
32422106--32422300	47	4.1	47	82	3	187	25	28	10	34	1.90
32428213--32428317	51	2.1	51	87	0	147	25	16	21	36	1.94
32429746--32429907	42	3.9	42	83	5	220	32	17	24	26	1.97
32434665--32434703	20	2.0	20	100	0	78	35	12	20	30	1.90
32434754--32434829	24	3.2	23	87	5	107	28	18	22	30	1.97
32453237--32453341	40	2.6	38	76	11	102	26	20	26	26	1.99
32458363--32458492	65	2.0	65	98	0	251	41	16	10	31	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32459423--32459461	20	1.9	21	89	5	62	25	46	5	23	1.73
32460016--32460130	29	4.0	28	82	8	142	28	28	14	27	1.95
32460007--32460117	58	1.9	57	87	1	159	28	29	14	27	1.95
32460341--32460377	16	2.3	16	90	0	56	8	21	18	51	1.72
32464520--32464634	29	4.0	29	82	6	128	28	28	16	26	1.97
32464511--32464598	29	3.1	29	82	8	117	28	30	14	26	1.95
32464511--32464621	58	1.9	58	85	1	152	27	28	17	26	1.97
32469078--32469163	28	3.0	28	84	3	109	26	30	15	27	1.96
32469373--32469408	16	2.2	16	95	0	63	13	25	13	47	1.80
32478343--32478376	17	1.9	18	88	5	52	50	5	5	38	1.51
32478965--32479002	17	2.2	17	90	0	58	42	2	0	55	1.14
32485421--32485464	19	2.2	20	92	4	72	20	36	29	13	1.91
32497271--32497315	20	2.2	20	96	0	81	20	37	28	13	1.90
32515342--32515441	50	2.0	50	98	0	191	40	9	18	33	1.81
32516300--32516353	27	2.0	27	100	0	108	48	3	18	29	1.65
32527067--32527122	27	2.2	25	75	12	58	41	14	16	28	1.87
32527076--32527129	27	2.0	28	88	3	83	42	11	14	31	1.81
32541849--32541912	27	2.4	27	92	2	103	51	6	3	39	1.43
32541898--32541930	17	1.9	17	93	0	57	51	12	6	30	1.63
32542488--32542568	40	2.0	41	86	9	114	38	22	27	12	1.90
32542496--32542621	39	3.2	39	78	11	91	38	19	26	15	1.91
32543227--32543304	41	1.9	41	84	5	104	16	39	23	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32548140--32548245	38	2.7	39	85	4	142	30	26	18	24	1.98
32548140--32548245	39	2.7	38	85	4	131	30	26	18	24	1.98
32565224--32565369	40	3.7	40	86	5	197	29	25	19	25	1.99
32565159--32565369	80	2.7	80	82	5	243	26	25	22	26	2.00
32573239--32573444	40	5.2	40	84	2	222	26	25	23	24	2.00
32576231--32576414	84	2.2	85	78	4	203	33	25	12	28	1.92
32576231--32576416	42	4.4	42	75	6	153	33	25	12	28	1.92
32591208--32591314	6	17.3	6	70	16	67	48	14	15	21	1.80
32591208--32591314	31	3.5	31	89	0	142	48	14	15	21	1.80
32591723--32591947	27	8.3	27	80	5	206	25	19	17	37	1.93
32591724--32591938	54	4.0	54	85	1	252	25	20	17	37	1.94
32591722--32591937	81	2.7	81	89	1	317	25	19	18	37	1.94
32591990--32592432	27	16.4	26	80	7	343	30	8	20	39	1.83
32592038--32592432	27	14.6	27	85	0	484	30	8	20	39	1.83
32591990--32592432	54	8.2	54	86	0	564	30	8	20	39	1.83
32593755--32593800	23	2.0	23	95	0	83	15	17	19	47	1.82
32597739--32597816	40	2.0	40	86	0	111	30	24	17	26	1.97
32597750--32598056	114	2.7	114	82	2	350	33	20	18	28	1.96
32598099--32598148	21	2.3	21	82	3	64	16	2	28	54	1.53
32598595--32598665	14	5.1	14	77	6	72	18	0	36	45	1.50
32598595--32598660	7	9.4	7	77	0	60	19	0	33	46	1.50
32598595--32598669	28	2.7	28	83	6	91	18	0	38	42	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32598620--32598663	21	2.1	21	91	0	70	15	0	38	45	1.47
32598627--32598669	21	2.1	21	86	4	61	16	0	44	39	1.48
32600140--32600232	46	2.0	46	100	0	186	29	15	8	47	1.74
32600648--32600676	3	9.7	3	100	0	58	0	31	0	68	0.89
32602580--32602647	16	4.2	16	92	0	118	27	0	36	35	1.58
32602875--32603084	17	12.6	17	64	22	63	53	2	0	43	1.20
32602912--32602960	24	2.1	22	85	14	64	55	0	2	42	1.11
32602891--32603027	41	3.4	39	75	18	127	54	2	1	42	1.21
32602941--32603003	26	2.5	25	82	10	83	58	1	0	39	1.07
32605409--32605455	21	2.2	21	92	0	76	27	25	25	21	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333