Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  295  of  333  ( 39894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97413391--97413463
36
2.1
35
97
2
137
36
16
10
35
1.84
97413587--97413626
21
2.0
20
85
5
53
10
2
15
72
1.21
97419500--97419548
21
2.3
21
85
3
62
65
6
2
26
1.27
97419499--97419548
23
2.2
22
78
3
55
66
6
2
26
1.26
97423697--97423746
24
2.0
25
85
11
68
62
0
0
38
0.96
97424475--97424549
38
2.0
38
100
0
150
34
9
5
50
1.57
97429515--97429645
38
3.4
38
82
0
163
36
16
14
32
1.89
97438524--97438579
21
2.6
22
75
8
62
41
26
0
32
1.56
97466818--97467645
75
11.1
75
87
4
1004
28
16
22
31
1.96
97466837--97467645
148
5.4
147
85
5
937
28
16
23
31
1.96
97466818--97467645
226
3.7
221
85
7
1030
28
16
22
31
1.96
97472724--97472787
33
2.0
32
90
3
101
39
25
9
26
1.86
97483254--97483303
20
2.5
20
96
0
91
34
22
10
34
1.87
97484470--97484533
33
2.0
32
90
3
101
39
25
9
26
1.86
97484750--97484905
41
3.8
41
96
0
276
27
22
20
29
1.98
97486608--97486651
18
2.5
18
88
3
72
13
25
45
15
1.83
97487113--97487172
24
2.5
24
91
2
95
23
3
48
25
1.66
97491436--97491480
18
2.6
18
82
3
56
15
35
28
20
1.93
97493715--97493852
27
5.2
26
74
17
106
44
1
15
37
1.56
97493758--97493868
40
2.8
40
80
13
122
46
2
15
35
1.60
97493701--97493901
13
14.8
13
68
13
93
47
2
15
34
1.59
97495766--97495874
44
2.6
41
80
9
128
23
19
22
33
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97495766--97495929
42
3.9
43
77
12
142
23
17
25
33
1.96
97500895--97500936
20
2.2
19
87
12
59
45
0
4
50
1.23
97500985--97501052
21
3.3
22
82
10
72
35
4
0
60
1.17
97501002--97501053
14
3.6
14
75
12
52
32
5
0
61
1.20
97501022--97501085
33
1.9
34
84
9
87
31
4
3
60
1.32
97502664--97502746
31
2.6
31
80
3
85
60
19
3
16
1.50
97508615--97508736
9
12.9
9
74
13
102
33
1
18
45
1.60
97508619--97508736
57
2.1
57
88
0
173
33
1
18
46
1.59
97508640--97508731
48
1.9
48
84
0
121
34
1
19
44
1.58
97508650--97508725
39
1.9
39
91
0
125
35
0
18
46
1.50
97512352--97512412
25
2.4
25
91
2
95
37
16
42
3
1.64
97512718--97513008
158
1.8
157
81
7
365
31
23
13
30
1.93
97512716--97513042
158
2.1
158
80
8
362
30
22
13
32
1.93
97514017--97514060
14
3.2
14
87
6
72
50
27
0
22
1.50
97514520--97514611
41
2.3
40
83
5
105
26
23
21
28
1.99
97514586--97514671
40
2.2
38
81
8
100
13
17
27
40
1.88
97514603--97514690
40
2.2
40
87
4
124
17
18
25
39
1.91
97525437--97526338
44
20.6
44
81
3
835
32
14
24
28
1.94
97525437--97526337
88
10.3
88
84
1
961
32
14
24
28
1.94
97527833--97527874
20
2.2
19
87
12
59
45
0
4
50
1.23
97527923--97527967
22
2.2
21
88
11
67
37
4
0
57
1.19
97535751--97535781
14
2.1
15
94
5
55
38
0
3
58
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97538148--97538191
22
2.0
22
90
0
70
54
4
0
40
1.21
97540729--97540914
80
2.3
80
89
0
273
28
16
22
32
1.95
97540729--97540916
40
4.7
40
85
0
241
28
16
22
32
1.96
97542254--97542306
26
2.0
27
85
7
74
24
15
22
37
1.92
97543796--97543853
26
2.2
26
93
0
98
36
24
5
34
1.78
97547270--97547327
27
2.1
27
96
0
107
34
17
17
31
1.93
97548938--97549036
36
2.7
37
81
4
112
35
20
2
42
1.64
97553574--97553631
17
3.6
17
73
15
52
60
0
1
37
1.07
97553924--97554147
3
72.3
3
64
25
51
61
1
3
33
1.22
97553882--97554146
59
4.4
59
75
16
201
61
1
4
33
1.24
97553927--97554047
13
9.8
12
68
23
56
61
1
2
33
1.19
97553875--97554211
20
17.3
19
66
21
107
62
1
4
32
1.25
97553929--97554147
49
4.5
46
73
17
119
61
1
3
33
1.22
97553884--97554143
58
4.3
57
70
19
149
61
1
4
33
1.25
97553881--97554147
17
15.2
17
67
23
87
61
1
4
32
1.24
97553977--97554147
27
6.2
27
69
22
99
61
1
3
33
1.23
97553995--97554137
14
9.8
15
65
24
56
60
1
4
34
1.25
97554380--97554440
30
2.0
31
84
9
81
54
13
11
21
1.70
97554745--97554772
9
3.1
9
100
0
56
21
57
21
0
1.41
97558445--97558525
32
2.5
32
86
4
110
30
1
16
51
1.52
97562993--97563038
21
2.3
19
88
7
65
73
8
0
17
1.07
97563664--97563709
11
4.3
11
73
15
51
17
0
2
80
0.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97563796--97563869
36
2.1
36
100
0
148
18
18
10
51
1.75
97563878--97563929
5
10.0
5
80
12
52
17
0
1
80
0.80
97563881--97563929
11
4.7
10
80
7
53
16
0
2
81
0.78
97563881--97563926
16
2.9
16
87
9
67
15
0
2
82
0.76
97563653--97564069
217
1.9
216
98
0
798
25
10
11
51
1.70
97564492--97564619
3
43.3
3
71
3
62
28
9
4
57
1.50
97564463--97564611
15
9.7
15
68
8
57
27
10
5
57
1.53
97564760--97564798
15
2.6
14
88
8
51
28
12
0
58
1.34
97564710--97564755
20
2.3
20
88
7
67
23
4
0
71
1.03
97566546--97566590
19
2.3
20
81
7
58
24
22
11
42
1.86
97568504--97568540
19
1.9
19
94
0
65
18
10
2
67
1.32
97571402--97571709
134
2.3
134
90
1
474
31
17
24
26
1.97
97571861--97572077
89
2.4
88
75
6
211
33
21
19
25
1.97
97572471--97572505
5
7.0
5
87
12
54
20
0
0
80
0.72
97572471--97572501
14
2.1
15
94
5
55
19
0
0
80
0.71
97573009--97573171
3
54.3
3
69
10
66
27
5
6
60
1.43
97573261--97573306
20
2.3
19
85
10
65
23
4
0
71
1.03
97578235--97578341
43
2.5
43
86
4
135
31
27
24
16
1.96
97579210--97579400
40
4.7
40
87
3
267
32
27
17
21
1.96
97579210--97579398
80
2.3
80
91
3
299
32
28
17
22
1.96
97580175--97580202
12
2.3
12
100
0
56
32
7
0
60
1.24
97583870--97583912
19
2.1
21
87
8
63
44
2
0
53
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97603091--97603146
22
2.6
21
76
18
60
58
3
7
30
1.42
97603204--97603228
13
1.9
13
100
0
50
84
0
0
16
0.63
97603379--97603577
61
3.4
60
81
12
252
62
4
9
23
1.42
97603445--97603636
100
1.9
102
83
8
255
60
4
10
24
1.48
97603440--97603656
52
4.2
52
81
9
232
60
4
10
24
1.46
97603440--97603656
100
2.1
102
77
11
228
60
4
10
24
1.46
97604754--97604780
11
2.5
11
100
0
54
11
40
40
7
1.69
97632444--97632515
21
3.4
21
77
7
83
13
15
18
52
1.74
97632379--97632509
42
3.1
42
79
1
154
13
19
16
49
1.79
97634594--97634720
44
2.8
45
83
4
148
33
14
24
28
1.94
97643486--97643607
62
2.0
62
90
0
190
36
22
11
29
1.89
97644900--97645072
43
4.0
43
76
6
172
30
25
16
28
1.96
97647038--97647081
21
2.1
21
100
0
88
38
25
4
31
1.76
97647683--97647835
42
3.6
42
84
6
168
28
23
16
32
1.96
97649915--97649955
19
2.1
20
95
4
75
26
4
4
63
1.35
97650510--97650549
9
4.4
9
84
12
55
77
0
22
0
0.77
97653587--97653654
28
2.4
27
88
7
100
25
4
2
67
1.23
97653593--97653674
28
3.5
23
79
17
73
25
3
2
68
1.18
97654786--97654965
96
1.9
97
83
8
242
28
13
25
32
1.94
97655636--97655674
20
2.0
20
85
10
53
25
5
2
66
1.25
97658168--97658442
48
5.7
48
85
5
310
28
16
26
29
1.96
97658147--97658407
97
2.6
98
84
6
312
27
15
25
31
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97658351--97658459
42
2.6
41
88
2
146
32
13
23
30
1.94
97658363--97658473
42
2.6
42
88
2
152
31
14
25
28
1.95
97660920--97660968
18
2.8
18
81
9
57
44
2
26
26
1.65
97662267--97662358
48
1.9
48
97
0
175
43
7
25
23
1.80
97673131--97673184
19
2.8
19
97
0
99
38
22
0
38
1.54
97673275--97673356
24
3.4
24
81
8
103
36
21
29
12
1.90
97673240--97673370
25
5.3
24
76
12
106
34
20
29
16
1.94
97685170--97685246
39
2.0
38
97
2
145
23
5
25
45
1.73
97687541--97687827
93
3.1
93
80
6
312
21
20
15
42
1.89
97687765--97687842
41
1.9
41
89
0
120
17
26
15
39
1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333