genome.fa.s3.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  111  of  333  ( 39894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35635602--35635713	55	2.0	55	89	0	170	38	16	16	27	1.91
35637354--35637535	81	2.3	76	82	9	217	28	15	15	40	1.88
35638531--35638565	9	3.8	9	85	7	52	80	5	2	11	1.00
35638531--35638566	19	1.9	18	94	5	63	77	5	2	13	1.05
35642693--35642798	33	3.2	33	72	10	99	18	12	30	38	1.88
35645353--35645446	42	2.2	43	79	11	104	29	24	19	26	1.98
35645342--35645498	43	3.7	41	75	8	127	31	26	17	24	1.97
35645598--35645651	28	1.9	28	82	14	67	38	24	1	35	1.66
35655265--35655365	43	2.4	43	83	1	123	37	23	17	20	1.94
35657832--35657857	9	2.9	9	100	0	52	0	0	19	80	0.71
35666833--35667001	49	3.5	48	77	6	146	28	20	27	24	1.99
35668710--35668779	36	1.9	36	97	0	131	30	20	28	21	1.98
35687322--35687413	48	1.9	48	84	4	123	23	14	28	33	1.94
35695184--35695332	60	2.5	60	82	7	160	28	22	19	29	1.98
35695325--35695370	20	2.3	20	82	14	60	28	28	17	26	1.98
35695337--35695380	19	2.2	20	84	4	54	34	25	18	22	1.96
35703257--35703369	52	2.2	52	98	1	217	44	14	14	27	1.83
35707840--35708002	42	3.9	41	78	9	134	28	16	25	28	1.97
35710393--35710577	79	2.3	80	81	7	207	26	27	21	24	1.99
35710393--35710577	40	4.7	40	81	7	216	26	27	21	24	1.99
35712138--35712218	20	4.1	20	93	0	126	22	40	27	9	1.85
35712140--35712222	40	2.1	40	93	0	139	20	38	28	12	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35713082--35713427	45	7.7	45	74	10	244	44	18	18	18	1.87
35713127--35713379	135	1.9	135	80	9	302	43	18	18	18	1.88
35715617--35715659	20	2.2	20	100	0	86	27	0	37	34	1.57
35722540--35722687	73	2.0	73	100	0	296	44	14	14	25	1.84
35727289--35727505	43	5.1	42	63	14	124	29	17	28	25	1.97
35727276--35727510	84	2.8	84	89	0	380	27	17	28	26	1.98
35731386--35731505	56	2.1	56	98	0	231	45	9	23	22	1.81
35733520--35733744	40	5.7	40	80	5	134	25	20	26	26	1.99
35733573--35733744	79	2.2	79	81	5	195	25	20	26	26	1.99
35733573--35733742	40	4.3	39	81	8	182	25	21	26	26	1.99
35740651--35740842	40	4.8	40	80	5	120	27	21	26	25	1.99
35740665--35740834	40	4.3	39	81	8	182	26	21	25	25	2.00
35743161--35743385	40	5.7	40	89	3	294	27	20	26	25	1.99
35743160--35743385	79	2.8	80	87	4	314	27	20	26	25	1.99
35743158--35743404	119	2.1	120	80	8	288	28	20	25	25	1.99
35743168--35743418	79	3.2	77	83	9	274	28	19	25	25	1.99
35749502--35749539	18	2.1	18	100	0	76	39	26	5	28	1.78
35753852--35753894	12	3.5	11	82	14	50	39	0	2	58	1.11
35757583--35757692	45	2.4	45	81	0	121	38	24	11	25	1.89
35769167--35769380	42	5.0	42	73	9	146	28	26	17	28	1.97
35769382--35769563	48	3.8	48	85	0	238	25	31	15	27	1.96
35775895--35776253	47	7.6	47	91	1	540	33	8	29	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35775895--35776253	192	1.9	188	91	3	594	33	8	29	28	1.87
35781847--35781929	39	2.2	39	91	2	132	31	18	22	27	1.97
35782116--35782176	6	10.2	6	100	0	122	83	0	0	16	0.64
35789862--35789897	17	2.1	17	89	0	54	50	22	0	27	1.50
35807029--35807285	40	6.5	40	88	2	351	22	23	28	24	2.00
35811388--35811417	15	2.0	15	100	0	60	40	20	6	33	1.78
35811943--35811981	21	1.9	20	94	5	69	46	23	0	30	1.53
35814279--35814315	16	2.3	16	100	0	74	21	10	0	67	1.21
35825748--35825789	21	2.0	20	82	13	50	38	23	16	21	1.93
35832665--35832922	132	2.0	132	81	1	302	35	17	18	27	1.94
35832969--35833299	131	2.5	131	83	5	341	34	16	19	29	1.93
35833003--35833315	131	2.4	130	84	5	407	32	16	19	32	1.94
35835696--35835750	17	3.2	17	77	15	51	23	1	0	74	0.91
35836027--35836818	44	18.0	44	84	2	948	27	30	14	28	1.95
35836030--35836818	308	2.6	306	91	2	1274	27	30	14	28	1.95
35846572--35846717	40	3.7	40	84	7	181	23	22	27	26	2.00
35846572--35846750	80	2.2	80	81	6	195	25	21	26	25	2.00
35853757--35853902	40	3.7	40	84	7	181	23	22	27	26	2.00
35853757--35853935	80	2.2	80	81	6	195	25	21	26	25	2.00
35858668--35858925	40	6.5	40	87	2	306	22	22	28	25	1.99
35865485--35865662	27	6.6	27	83	3	178	29	28	15	26	1.96
35865511--35865661	82	1.9	81	88	4	232	28	27	16	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35873540--35873717	27	6.6	27	83	3	178	29	28	15	26	1.96
35873566--35873716	82	1.9	81	88	4	232	28	27	16	27	1.97
35890978--35891155	27	6.6	27	84	3	205	29	28	15	26	1.96
35890999--35891154	82	1.9	81	88	3	233	29	28	15	26	1.96
35916929--35916981	26	2.0	26	100	0	106	45	22	7	24	1.78
35928661--35928858	40	4.9	40	85	4	238	31	19	22	27	1.98
35928906--35929011	40	2.7	40	86	0	149	28	21	23	26	1.99
35928763--35929080	143	2.2	143	88	3	451	30	19	21	28	1.97
35929150--35929303	14	10.8	14	73	10	89	20	0	35	43	1.52
35929158--35929282	22	5.9	21	79	14	98	21	0	37	40	1.54
35929150--35929304	7	21.7	7	75	6	69	21	0	35	43	1.53
35936187--35936269	41	2.0	41	97	0	157	48	14	10	26	1.77
35936706--35936836	55	2.4	55	76	3	131	13	24	31	30	1.94
35941570--35941603	18	1.9	18	94	5	61	29	14	11	44	1.81
35942859--35942961	28	3.7	28	80	0	125	25	34	15	24	1.94
35944461--35944635	43	4.1	41	81	7	118	25	18	28	27	1.98
35944496--35944641	43	3.4	42	82	9	170	24	19	27	28	1.99
35947596--35947744	51	3.1	50	70	18	127	32	27	16	24	1.96
35947733--35947854	42	2.9	43	72	10	124	31	36	13	17	1.89
35947688--35947854	85	2.0	85	89	2	255	31	34	14	19	1.92
35947658--35947825	43	3.9	43	72	10	146	30	32	15	20	1.94
35949942--35949996	28	2.0	28	88	0	83	32	29	10	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35950003--35950087	40	2.1	40	84	0	107	36	24	15	23	1.93
35956490--35956557	19	3.6	19	88	4	111	35	16	10	38	1.82
35956486--35956557	37	1.9	38	94	2	128	36	15	9	38	1.80
35956909--35957183	45	6.1	45	79	9	281	26	26	15	31	1.96
35957123--35957417	78	3.8	78	88	1	430	25	23	18	32	1.97
35971905--35971980	22	3.7	21	75	15	68	42	15	6	35	1.73
35971941--35972066	19	6.9	19	87	8	192	38	14	10	37	1.80
35971941--35972066	35	3.5	36	87	7	184	38	14	10	37	1.80
35971955--35972064	17	6.5	15	85	8	78	38	14	10	37	1.80
35971941--35972066	54	2.3	54	97	0	234	38	14	10	37	1.80
35977428--35977498	30	2.4	29	77	9	74	67	5	1	25	1.20
35982110--35982167	24	2.4	24	94	0	98	29	15	24	31	1.95
35990574--35990688	46	2.5	46	72	12	103	31	17	19	32	1.95
35990528--35990783	88	2.9	88	69	12	207	30	16	20	32	1.95
35990829--35990959	43	3.0	45	73	6	115	26	20	20	32	1.97
35993787--35993875	46	1.9	46	88	0	133	25	26	16	30	1.97
35994655--35994711	21	2.9	19	82	7	62	1	21	0	77	0.86
35995285--35995309	13	1.9	13	100	0	50	4	0	16	80	0.87
35995275--35995322	22	2.1	23	85	11	64	8	0	12	79	0.94
35995293--35995329	7	5.1	7	87	6	56	10	0	5	83	0.79
36003437--36003612	46	3.8	45	78	11	196	21	20	29	28	1.98
36003431--36003604	93	1.9	93	92	2	296	21	20	29	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36012512--36012565	20	2.7	20	94	0	99	11	33	29	25	1.91
36013434--36013607	88	2.0	88	95	0	312	36	21	14	27	1.93
36017822--36018027	28	7.3	28	75	7	157	28	16	20	34	1.94
36017835--36017939	54	1.9	54	80	3	122	29	13	20	36	1.91
36021718--36021767	26	1.9	26	95	0	91	34	22	8	36	1.83
36022308--36022370	29	2.2	29	97	2	119	26	12	19	41	1.87
36041940--36042117	27	6.6	27	83	3	178	29	28	15	26	1.96
36041966--36042116	82	1.9	81	88	4	232	28	27	16	27	1.97
36051681--36051850	85	2.0	85	100	0	340	37	15	20	27	1.92
36057215--36057271	28	2.0	28	96	0	105	28	14	12	45	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333