Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  329  of  333  ( 39894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106532078--106533022
313
3.0
313
85
7
1487
29
15
14
39
1.88
106533771--106533963
66
3.0
66
89
2
275
45
7
30
17
1.76
106536242--106536268
13
2.1
13
100
0
54
44
0
29
25
1.54
106546917--106546953
19
2.0
19
89
5
58
56
2
0
40
1.13
106549249--106549290
12
3.4
12
86
3
57
19
2
7
71
1.20
106558261--106558291
15
2.1
15
93
0
53
25
9
12
51
1.70
106558663--106558720
30
1.9
30
85
3
80
50
1
15
32
1.55
106562450--106562502
25
2.2
23
75
15
54
50
9
5
33
1.58
106567491--106567527
20
1.9
19
89
10
58
43
8
2
45
1.47
106569740--106569793
3
18.0
3
84
0
72
5
31
1
61
1.30
106570929--106571484
208
2.7
202
85
6
680
27
12
21
37
1.90
106578026--106578107
42
2.0
42
90
0
128
20
23
15
40
1.91
106580576--106580636
22
2.7
24
80
7
65
49
4
42
3
1.40
106583974--106584045
35
2.1
35
100
0
144
34
12
16
36
1.87
106587804--106587991
96
2.0
96
83
0
241
30
29
15
24
1.96
106587890--106588283
123
3.2
123
85
3
528
27
32
15
24
1.96
106589008--106589039
14
2.3
14
94
0
55
40
18
15
25
1.90
106588996--106589039
21
2.1
21
87
8
63
40
20
13
25
1.89
106589625--106589676
21
2.5
20
84
9
68
63
0
3
32
1.12
106597472--106597906
92
4.8
93
75
11
330
48
12
6
32
1.66
106598283--106598504
95
2.3
95
83
6
238
46
13
5
33
1.67
106599133--106599671
126
4.3
126
87
1
776
34
17
20
27
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106602685--106603299
116
5.3
116
95
0
1086
47
9
3
39
1.54
106603402--106603444
21
2.0
21
81
0
50
4
18
41
34
1.71
106603762--106603827
30
2.2
30
81
10
73
7
18
43
30
1.77
106605495--106605553
31
1.9
31
85
0
82
40
1
30
27
1.66
106605502--106605553
11
4.9
11
79
9
63
42
1
28
26
1.66
106607038--106607218
46
3.8
46
78
15
195
27
29
21
21
1.99
106609897--106609953
30
1.9
30
82
13
73
47
3
0
49
1.18
106610130--106610180
13
3.9
13
80
10
68
37
19
5
37
1.76
106615428--106615473
22
2.0
23
83
4
58
69
4
4
21
1.24
106620843--106620911
32
2.1
33
91
5
113
40
10
10
39
1.73
106629711--106629743
2
16.5
2
87
12
50
0
45
3
51
1.16
106631116--106631189
30
2.5
31
80
8
73
55
8
9
27
1.60
106631768--106631795
14
2.0
14
100
0
56
64
7
21
7
1.43
106635836--106635868
14
2.4
14
90
5
50
30
9
9
51
1.64
106648978--106649015
18
2.1
18
100
0
76
39
18
10
31
1.85
106656757--106656824
30
2.3
30
82
5
84
51
7
2
38
1.45
106658973--106659061
31
2.9
31
81
5
90
46
16
4
32
1.68
106659529--106659587
31
1.9
31
86
3
84
27
16
6
49
1.71
106664679--106664712
17
2.0
17
94
0
59
44
50
0
5
1.26
106669318--106669351
17
2.0
17
94
0
59
44
50
0
5
1.26
106672644--106672689
24
2.0
22
83
8
56
36
0
0
63
0.95
106672834--106672880
14
3.6
14
78
21
57
61
0
0
38
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106672833--106672880
25
1.9
25
87
8
71
62
0
0
37
0.95
106672982--106673056
38
2.0
38
86
0
105
49
14
9
26
1.74
106673235--106673264
7
4.3
7
91
0
51
36
0
3
60
1.14
106677632--106677708
38
2.0
38
100
0
154
27
20
18
33
1.96
106678808--106678908
39
2.6
39
93
0
166
37
24
25
11
1.90
106678826--106678890
21
3.2
21
71
20
66
41
23
24
10
1.86
106678808--106678923
39
3.0
39
85
7
155
37
25
24
12
1.91
106681687--106681735
5
10.0
5
75
20
50
38
0
4
57
1.18
106681700--106681787
3
30.7
3
73
17
71
32
1
4
61
1.24
106682036--106682102
33
2.0
33
83
11
84
41
0
5
52
1.26
106683309--106683416
45
2.6
39
76
16
108
22
20
18
38
1.93
106683322--106683418
45
2.2
45
90
0
149
22
18
18
40
1.92
106686149--106686439
148
2.0
147
95
0
519
24
9
42
23
1.83
106701927--106701969
18
2.2
21
84
12
56
32
6
4
55
1.47
106713905--106713936
2
16.5
2
93
6
57
53
0
0
46
1.00
106713904--106713934
15
2.1
15
100
0
62
54
0
0
45
0.99
106713905--106713937
17
1.9
17
100
0
66
54
0
0
45
0.99
106720423--106720486
31
2.1
31
87
0
92
18
10
15
54
1.70
106723577--106723608
13
2.5
13
94
0
55
34
3
0
62
1.11
106724156--106724194
21
1.9
20
84
5
51
64
0
0
35
0.94
106727919--106727963
16
2.9
16
78
18
51
44
0
0
55
0.99
106736232--106736271
21
1.9
21
94
0
71
52
0
12
35
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106737270--106737327
30
1.9
30
82
6
73
44
8
6
39
1.62
106740031--106740085
23
2.3
24
90
3
85
21
18
10
49
1.78
106746454--106746843
195
2.0
192
93
1
672
42
18
15
23
1.89
106747843--106747905
31
2.0
31
87
0
90
44
11
11
33
1.75
106781521--106781717
108
1.8
107
87
1
295
29
19
19
30
1.97
106783546--106783577
17
1.9
17
93
6
57
9
6
43
40
1.62
106784145--106784170
7
3.7
7
100
0
52
57
0
0
42
0.98
106784333--106784400
29
2.4
28
76
16
75
60
1
5
32
1.30
106787869--106787899
4
7.8
4
92
0
53
48
22
3
25
1.66
106799994--106800022
11
2.6
11
100
0
58
31
27
0
41
1.56
106801010--106801300
145
2.0
145
99
0
573
37
22
9
29
1.87
106803670--106803710
9
4.3
10
81
6
50
36
0
0
63
0.95
106803672--106803745
30
2.5
32
83
12
88
32
2
1
63
1.17
106816082--106816110
14
2.1
14
100
0
58
58
0
6
34
1.25
106817286--106817318
3
11.0
3
100
0
66
33
0
0
66
0.92
106820271--106820300
15
1.9
16
93
6
53
30
0
3
66
1.07
106824011--106824069
30
2.0
30
93
0
100
22
22
3
52
1.61
106824041--106824150
42
2.6
42
89
0
166
24
18
3
53
1.60
106828489--106828561
29
2.5
30
84
2
94
41
15
10
32
1.82
106830721--106830752
16
2.0
16
93
0
55
43
34
0
21
1.53
106843946--106843980
18
2.0
17
88
5
52
34
5
5
54
1.48
106844040--106844066
3
9.0
3
100
0
54
33
0
0
66
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106844840--106844871
15
2.1
15
94
0
55
18
3
56
21
1.56
106855962--106856026
22
2.8
23
78
17
71
52
7
1
38
1.40
106855969--106856024
25
2.4
23
82
8
69
55
7
0
37
1.27
106856610--106856639
3
10.0
3
100
0
60
66
0
0
33
0.92
106857959--106857993
14
2.4
15
90
4
54
62
2
0
34
1.10
106865655--106865719
31
2.1
31
97
0
121
40
26
6
27
1.80
106866222--106866255
17
2.0
17
94
0
59
38
2
17
41
1.65
106869494--106869528
16
2.4
14
90
9
52
31
0
0
68
0.90
106869494--106869530
15
2.4
16
90
4
58
32
0
0
67
0.91
106870079--106870124
13
3.5
13
80
8
58
32
0
6
60
1.22
106870695--106870719
13
1.9
13
100
0
50
52
0
0
48
1.00
106872627--106872690
31
2.1
31
97
2
121
51
10
15
21
1.74
106874253--106874292
20
2.0
20
85
14
55
57
5
22
15
1.57
106874367--106874393
10
2.7
10
100
0
54
29
11
29
29
1.91
106881035--106881093
3
19.7
3
82
6
75
30
5
1
62
1.26
106881222--106881301
36
2.2
36
80
8
92
36
8
2
52
1.46
106886220--106886256
8
4.6
8
100
0
74
72
13
0
13
1.11
106888407--106888840
88
5.0
88
93
1
703
28
21
24
26
1.99
106888407--106888840
174
2.5
175
93
1
746
28
21
24
26
1.99
106888783--106888903
55
2.2
56
85
7
158
32
20
26
20
1.97
106889159--106889400
44
5.5
44
72
9
163
32
19
19
28
1.96
106889208--106889435
44
5.3
41
71
11
134
31
19
19
29
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106889208--106889446
131
1.8
131
89
1
381
31
18
20
28
1.97
106890957--106891009
3
17.7
3
80
7
63
30
5
1
62
1.29
106891138--106891217
36
2.2
36
80
8
92
36
8
2
52
1.46
106897416--106897472
26
2.2
26
100
0
114
14
19
7
59
1.57
106898300--106898346
13
3.8
12
78
13
51
10
2
8
78
1.04
106904653--106904682
7
4.3
7
95
0
51
26
13
40
20
1.89
106904677--106904926
81
3.1
81
85
4
344
34
16
22
26
1.95
106906986--106907032
22
2.1
22
84
7
60
25
0
2
72
0.96
106912919--106912970
22
2.4
21
84
9
61
34
0
0
65
0.93
106930400--106930438
19
2.1
19
100
0
78
38
25
15
20
1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333