genome.fa.s3.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  114  of  333  ( 39894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36835820--36835921	24	4.2	24	68	22	61	31	12	29	26	1.93
36838512--36838636	52	2.4	52	94	2	214	52	9	21	16	1.71
36839877--36840094	40	5.5	40	90	2	307	24	22	26	26	2.00
36844987--36845087	36	2.8	36	90	1	157	26	31	17	23	1.97
36845206--36845373	47	3.6	47	91	0	264	27	30	8	32	1.86
36847288--36847312	13	1.9	13	100	0	50	36	16	16	32	1.90
36851778--36851853	40	1.9	40	100	0	152	21	23	28	26	1.99
36853524--36853679	40	3.9	40	88	5	235	24	23	28	23	1.99
36861477--36861632	40	3.9	40	88	5	235	24	23	28	23	1.99
36863008--36863156	40	3.8	40	84	4	169	24	20	26	28	1.99
36866682--36866865	67	2.8	64	76	8	185	29	16	30	23	1.96
36885286--36885491	100	2.1	100	96	0	376	41	17	4	36	1.70
36888075--36888190	42	2.8	42	79	7	119	16	25	16	42	1.88
36890021--36890126	47	2.2	47	81	8	133	47	11	10	31	1.73
36903698--36903750	23	2.4	22	76	20	56	9	18	1	69	1.25
36905020--36905053	9	3.9	9	88	7	52	8	8	11	70	1.34
36920962--36921255	147	2.0	147	99	0	579	30	6	24	38	1.80
36925551--36925610	27	2.3	26	82	2	66	38	20	20	21	1.94
36932815--36932874	27	2.3	26	85	2	75	35	20	23	21	1.96
36942947--36943152	100	2.1	100	96	0	376	41	17	4	36	1.70
36945735--36945850	42	2.8	42	79	7	119	16	25	16	42	1.88
36947681--36947786	47	2.2	47	81	8	133	47	11	10	31	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36968040--36968083	18	2.4	19	82	17	58	43	9	9	38	1.68
36971013--36971046	13	2.6	13	95	0	59	58	8	5	26	1.51
36972721--36972768	15	3.3	15	73	5	53	31	0	25	43	1.55
36972715--36972774	29	2.1	29	90	0	93	30	0	28	41	1.56
36975118--36975387	46	5.7	49	75	14	180	25	19	28	25	1.99
36975167--36975387	49	4.6	48	74	11	163	25	19	29	26	1.98
36978358--36978454	30	3.2	30	73	2	97	29	16	25	27	1.97
36984417--36984542	27	4.7	26	75	15	71	37	21	9	31	1.86
36984410--36984585	54	3.3	53	79	5	185	37	21	9	31	1.86
36984455--36984583	27	4.8	27	79	5	109	37	20	9	31	1.85
36984525--36984773	81	3.1	81	80	2	187	32	20	8	38	1.82
36984563--36984791	27	8.5	27	86	1	289	30	22	7	40	1.81
36984801--36985039	27	9.0	26	86	4	286	34	20	21	24	1.97
36984801--36985022	54	4.1	54	91	2	333	34	21	20	23	1.97
36984801--36985022	81	2.8	81	89	2	331	34	21	20	23	1.97
36985266--36985419	67	2.3	67	96	0	281	18	28	22	30	1.97
36985352--36985403	27	2.0	26	88	3	77	17	25	21	36	1.94
36985522--36985705	6	29.8	6	73	15	144	19	17	14	48	1.80
36985522--36985694	31	5.6	30	70	15	111	19	17	14	48	1.81
36985522--36985588	25	2.7	25	80	0	80	20	17	11	49	1.79
36985544--36985626	37	2.2	37	82	0	103	19	16	15	48	1.82
36985587--36985651	25	2.6	25	90	0	94	16	18	16	47	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36985523--36985714	62	3.1	62	87	2	262	19	17	14	48	1.80
36985607--36985700	37	2.5	37	85	0	134	18	18	15	47	1.82
36985522--36985703	19	9.8	18	71	17	88	19	17	14	48	1.80
36995465--36995503	20	2.0	20	94	0	69	79	2	17	0	0.84
36995462--36995503	15	2.9	14	85	7	57	80	2	16	0	0.81
36997685--36997828	27	5.3	27	82	3	173	26	20	16	36	1.94
36997687--36997828	54	2.7	53	87	4	205	26	21	16	35	1.94
37004950--37005079	64	2.0	64	91	2	208	26	16	18	39	1.91
37008073--37008131	16	3.6	16	80	8	66	35	37	5	22	1.76
37011067--37011152	43	2.0	43	88	0	127	30	33	17	18	1.94
37012757--37013084	174	1.9	174	98	0	629	31	24	14	29	1.95
37013037--37013115	29	2.7	30	82	13	110	29	30	15	25	1.96
37025866--37025937	23	3.1	23	91	0	117	38	27	9	23	1.86
37029274--37029313	20	2.0	20	90	0	62	35	12	5	47	1.63
37031816--37031847	7	4.4	7	96	4	55	75	0	0	25	0.81
37031800--37031857	22	2.7	21	76	15	64	72	3	1	22	1.09
37037068--37037227	78	2.1	78	93	0	275	38	4	20	37	1.72
37042407--37042460	27	2.0	27	100	0	108	33	22	7	37	1.82
37043287--37043388	50	2.0	51	88	1	152	37	23	9	29	1.87
37044212--37044447	41	5.8	40	83	3	249	24	26	12	36	1.91
37044214--37044447	81	2.9	81	84	3	283	24	25	12	36	1.91
37044456--37044502	23	2.0	23	91	0	76	31	6	25	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37055302--37055353	21	2.2	24	80	16	65	28	7	19	44	1.78
37057508--37057679	93	1.8	93	89	0	272	27	27	22	22	1.99
37057501--37057675	46	3.8	45	77	10	183	28	26	21	22	1.99
37060058--37060146	30	3.0	30	80	8	101	57	15	16	10	1.65
37060058--37060137	15	5.4	15	80	7	92	58	13	17	10	1.62
37060069--37060146	15	5.2	15	78	9	79	56	15	16	11	1.67
37063121--37063177	30	1.9	30	85	7	80	40	7	28	24	1.81
37063672--37063805	43	3.1	43	77	10	139	23	14	29	32	1.94
37063672--37063762	42	2.1	41	84	9	121	24	13	28	34	1.93
37063777--37063876	51	2.0	51	87	0	146	24	18	27	31	1.97
37064759--37064828	35	2.0	35	100	0	140	45	17	14	22	1.84
37066332--37066378	24	2.0	24	100	0	94	27	4	21	46	1.69
37066752--37066812	20	3.0	20	67	13	52	26	27	11	34	1.91
37066607--37066843	41	5.8	41	80	0	224	21	26	15	36	1.93
37067339--37067550	117	1.8	118	91	3	356	45	23	8	22	1.80
37067717--37067763	16	2.9	16	84	15	69	31	0	25	42	1.55
37067787--37067832	17	2.8	16	80	6	56	19	6	34	39	1.78
37070965--37071135	43	4.0	43	80	6	186	34	23	14	26	1.94
37071253--37071322	35	2.0	35	83	5	88	48	12	5	32	1.65
37077057--37077115	24	2.5	24	78	13	59	66	1	30	1	1.12
37087975--37088345	48	7.8	48	92	1	584	34	6	27	31	1.82
37090400--37090717	40	7.9	40	91	0	483	23	21	29	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37090877--37090927	25	2.0	25	81	7	59	33	13	31	21	1.92
37093766--37094090	48	6.8	48	92	0	524	33	6	27	32	1.82
37093766--37094090	144	2.3	144	96	0	596	33	6	27	32	1.82
37094134--37094236	37	2.8	37	95	0	179	22	20	32	25	1.98
37095945--37095991	22	2.1	22	85	14	62	40	8	10	40	1.70
37097310--37097358	14	3.5	14	72	10	55	61	8	12	18	1.55
37097311--37097371	28	2.2	28	97	2	115	57	9	13	19	1.63
37108381--37108459	31	2.5	31	93	0	140	27	25	17	29	1.98
37108483--37108574	42	2.2	42	92	0	148	34	21	14	29	1.93
37108719--37108867	26	5.8	26	88	0	221	26	23	23	26	2.00
37108716--37108867	52	3.0	51	92	4	254	27	23	23	26	2.00
37109670--37109752	27	3.1	27	91	3	123	21	25	21	31	1.98
37109793--37110151	27	13.3	27	76	6	235	30	8	20	40	1.81
37109905--37110151	54	4.6	53	82	4	273	29	7	21	41	1.80
37109903--37110137	81	2.9	80	89	3	346	29	7	21	41	1.80
37109877--37110298	27	15.7	27	80	4	226	31	8	21	37	1.84
37119126--37119330	40	5.1	40	89	1	304	23	23	26	26	2.00
37125469--37125505	3	12.7	3	94	5	67	32	0	0	67	0.91
37134280--37134401	33	3.7	33	93	0	208	27	25	13	34	1.93
37147852--37147928	36	2.2	35	95	2	136	33	24	7	33	1.84
37149064--37149304	48	5.1	48	73	11	192	27	23	19	29	1.98
37158236--37158305	28	2.5	28	90	4	106	32	27	12	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37164178--37164372	68	2.9	64	81	8	169	23	29	16	29	1.97
37167569--37167628	27	2.3	26	85	2	75	21	23	20	35	1.96
37173221--37173707	47	10.1	47	85	6	650	30	12	30	27	1.93
37173221--37173707	98	5.0	94	89	4	650	30	12	30	27	1.93
37173221--37173707	145	3.3	144	89	4	719	30	12	30	27	1.93
37173681--37173771	46	2.0	46	86	0	128	34	9	30	25	1.88
37173230--37173756	245	2.2	244	88	5	770	30	12	29	26	1.93
37173916--37174139	37	6.1	37	95	0	376	23	18	31	27	1.97
37175404--37175851	40	11.2	40	92	0	689	23	21	28	26	1.99
37175538--37175644	23	5.2	23	60	25	67	22	22	29	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333