Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  16  of  333  ( 39894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4651613--4651715
26
4.0
26
92
1
163
33
7
23
35
1.83
4657598--4657817
46
4.8
47
79
5
245
22
19
29
29
1.98
4657592--4657763
93
1.8
93
88
2
265
22
19
29
29
1.98
4660778--4660846
15
4.6
15
87
0
93
13
17
11
57
1.64
4660769--4660856
30
3.0
30
83
8
108
11
17
14
56
1.66
4663227--4663491
46
5.7
45
86
7
236
22
20
29
28
1.98
4663269--4663391
47
2.6
47
98
0
237
21
20
30
26
1.98
4665151--4665195
23
1.9
24
86
4
65
44
0
0
55
0.99
4676448--4676617
62
2.7
62
93
0
286
41
2
7
49
1.43
4679641--4679681
21
1.9
22
85
5
57
48
7
2
41
1.44
4689655--4689761
47
2.3
47
79
6
119
16
20
1
60
1.45
4689685--4689713
14
2.0
15
93
6
51
13
17
0
68
1.20
4689928--4689994
19
3.6
19
67
15
50
11
26
0
61
1.31
4700319--4700345
5
5.4
5
100
0
54
40
0
0
59
0.98
4700595--4700639
21
2.2
20
84
4
54
46
2
17
33
1.61
4708867--4708900
17
1.9
18
88
5
52
50
32
0
17
1.47
4711726--4711757
2
16.0
2
100
0
64
50
50
0
0
1.00
4713312--4713475
3
54.7
3
72
13
106
64
6
3
25
1.33
4713300--4713342
18
2.3
19
88
8
61
60
4
6
27
1.43
4714830--4714940
47
2.4
47
83
6
145
34
23
17
25
1.96
4718703--4718752
26
2.0
27
84
11
70
42
4
4
50
1.40
4719098--4719145
18
2.7
18
81
9
62
54
0
4
41
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4719414--4719470
26
2.2
25
84
3
69
31
1
1
64
1.13
4719413--4719477
25
2.6
25
76
9
62
33
1
3
61
1.21
4728296--4728355
32
1.9
32
82
3
77
40
10
10
40
1.72
4728600--4728660
16
3.7
16
71
6
50
60
0
4
34
1.18
4729146--4729202
9
6.6
8
75
15
51
31
1
0
66
1.02
4729212--4729268
21
2.8
21
81
5
64
29
8
0
61
1.26
4729316--4729397
20
4.2
20
75
13
66
34
1
4
59
1.26
4730040--4730077
14
2.7
15
88
8
53
31
2
0
65
1.06
4743756--4743806
7
7.3
7
97
0
84
43
29
9
17
1.81
4746645--4746678
16
2.1
16
88
5
50
35
0
0
64
0.94
4746643--4746693
25
2.1
25
82
10
61
43
0
0
56
0.99
4749096--4749158
18
3.3
20
71
13
60
57
4
1
36
1.30
4757254--4757310
25
2.2
25
80
17
64
71
0
14
14
1.14
4764244--4764270
3
9.0
3
100
0
54
66
0
33
0
0.92
4764549--4764586
17
2.2
17
90
9
60
28
0
2
68
1.03
4765163--4765195
17
1.9
17
88
11
50
42
0
0
57
0.98
4774109--4774168
21
2.8
21
85
7
77
28
6
35
30
1.83
4776169--4776297
32
4.0
32
85
1
186
44
8
11
34
1.71
4777623--4777685
30
2.1
30
91
5
101
25
4
11
58
1.51
4779307--4779405
29
3.0
34
76
22
120
40
21
15
23
1.90
4779503--4779545
21
2.0
21
100
0
86
39
18
4
37
1.72
4784163--4784188
12
2.2
12
100
0
52
30
23
23
23
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4784264--4784288
13
1.9
13
100
0
50
32
0
4
64
1.12
4788942--4788974
17
1.9
17
93
0
57
12
3
33
51
1.54
4789153--4789192
16
2.6
16
84
4
55
20
12
25
42
1.86
4792336--4792406
35
2.0
35
100
0
142
25
8
19
46
1.78
4804033--4804105
38
1.9
38
100
0
146
49
12
5
32
1.63
4806471--4806497
5
5.4
5
100
0
54
37
0
0
62
0.95
4806588--4806626
19
2.1
19
90
0
60
35
7
25
30
1.84
4809119--4809151
2
16.5
2
93
0
57
45
0
51
3
1.16
4814242--4814300
31
1.9
31
83
13
77
38
0
0
61
0.96
4814402--4814433
5
6.4
5
100
0
64
62
0
18
18
1.33
4815624--4815669
23
2.0
23
100
0
92
52
17
13
17
1.75
4815592--4815704
54
2.1
54
89
0
172
51
16
10
21
1.74
4824592--4824670
18
4.5
17
73
20
65
45
0
2
51
1.14
4824634--4824666
13
2.4
14
95
5
59
42
0
0
57
0.98
4824586--4824669
38
2.3
36
77
16
86
45
0
2
52
1.13
4824817--4824867
19
2.6
19
81
3
57
72
0
15
11
1.12
4825708--4825769
32
1.9
32
100
0
124
8
16
35
40
1.78
4825823--4825885
18
3.5
18
80
0
72
38
11
11
39
1.76
4825895--4825932
20
1.9
19
89
5
58
44
2
15
36
1.61
4827632--4827662
11
2.7
11
95
5
53
70
3
0
25
1.02
4827661--4827685
10
2.5
10
100
0
50
84
8
8
0
0.79
4827774--4827809
16
2.2
16
90
0
54
0
50
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4828234--4828281
19
2.4
19
83
13
53
33
4
8
54
1.50
4832046--4832186
44
3.2
44
71
15
146
26
29
16
28
1.97
4832205--4833203
132
7.6
132
96
0
1757
28
26
17
27
1.98
4833211--4834387
132
8.8
134
93
0
1895
28
22
20
27
1.99
4833685--4833871
46
4.2
46
65
10
125
30
23
19
26
1.98
4833211--4834387
266
4.4
266
92
1
1887
28
22
20
27
1.99
4833228--4834387
398
2.9
398
96
0
2097
28
22
20
27
1.99
4834083--4834276
46
4.3
46
66
10
130
30
23
20
26
1.98
4834337--4834506
86
2.0
87
88
1
252
28
22
23
24
1.99
4837988--4838031
19
2.3
20
84
7
56
27
20
11
40
1.86
4842307--4842756
46
10.0
46
65
11
239
26
20
23
29
1.99
4842411--4842608
45
4.4
45
66
11
116
26
20
24
28
1.99
4842199--4842763
136
4.2
134
95
1
950
26
20
23
30
1.98
4842735--4843326
44
13.5
44
76
5
475
27
16
26
29
1.97
4842741--4843326
132
4.4
132
94
0
994
26
17
26
29
1.97
4844635--4844689
3
18.7
3
83
10
69
32
1
1
63
1.15
4849869--4849898
14
2.1
14
100
0
60
66
0
6
26
1.16
4850558--4850582
9
2.8
9
100
0
50
88
12
0
0
0.53
4857287--4857340
18
3.0
18
78
13
58
66
7
3
22
1.33
4860468--4860528
31
2.0
31
100
0
122
39
0
21
39
1.53
4861986--4862255
46
5.8
46
86
3
283
40
15
22
21
1.90
4861981--4862255
92
3.0
93
84
4
315
40
15
22
21
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4865129--4865263
30
4.5
30
87
1
166
25
48
4
21
1.69
4865740--4865871
25
5.5
23
68
16
65
34
4
3
57
1.34
4865817--4865957
25
5.5
25
73
12
99
32
7
3
56
1.43
4866115--4866162
16
3.1
15
90
6
69
31
2
2
64
1.16
4866115--4866166
8
6.5
8
82
8
61
30
1
1
65
1.14
4878174--4878333
75
2.1
75
90
0
257
29
19
20
30
1.97
4878110--4878700
178
3.4
167
88
5
810
27
18
20
32
1.97
4878249--4878700
89
5.1
89
92
0
724
27
18
19
34
1.96
4878605--4878837
73
3.1
75
85
6
307
25
21
21
31
1.98
4878828--4878872
14
3.3
14
90
3
65
17
11
4
66
1.38
4879730--4879821
30
3.1
30
98
0
175
28
48
3
19
1.64
4879748--4879800
18
3.3
18
65
29
55
24
49
3
22
1.66
4879730--4879865
60
2.3
60
84
5
168
27
47
3
22
1.68
4880350--4880481
25
5.5
23
68
16
65
34
4
3
57
1.34
4880427--4880488
25
2.5
25
81
0
70
32
3
1
62
1.20
4880505--4880563
25
2.5
23
78
10
66
33
6
6
52
1.54
4880523--4880575
25
2.1
25
89
0
79
33
3
5
56
1.41
4880722--4880769
16
3.1
15
90
6
69
31
2
2
64
1.16
4880722--4880773
8
6.5
8
82
8
61
30
1
1
65
1.14
4883583--4883615
16
2.0
17
88
5
50
24
12
0
63
1.28
4885957--4886001
21
2.2
20
84
4
54
42
0
15
42
1.47
4902459--4902488
15
2.0
15
93
0
51
63
0
6
30
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4902577--4902642
18
3.6
18
80
13
73
59
1
7
31
1.35
4902705--4902751
21
2.2
21
84
0
58
70
2
4
23
1.16
4902712--4902758
15
3.3
15
77
17
55
68
2
6
23
1.24
4902706--4902758
27
2.0
27
92
0
88
69
1
5
22
1.19
4902921--4903035
3
38.7
3
72
10
76
60
1
9
28
1.38
4902926--4902965
20
2.0
21
85
5
55
57
2
12
27
1.48
4904759--4904831
23
3.2
23
88
7
121
31
24
20
23
1.98
4904918--4904946
8
3.6
8
100
0
58
34
27
13
24
1.93
4912077--4912149
23
3.2
23
88
7
121
31
24
20
23
1.98
4912236--4912264
8
3.6
8
100
0
58
34
27
13
24
1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333