genome.fa.s3.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  146  of  333  ( 39894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47743264--47743531	40	6.7	40	94	0	455	22	26	20	31	1.98
47751739--47752008	40	6.8	40	94	0	459	22	26	20	31	1.98
47758671--47758768	52	1.9	51	95	2	178	29	29	13	27	1.94
47759273--47759313	21	1.9	22	85	14	59	36	21	0	41	1.54
47759942--47760083	49	2.9	47	81	8	160	23	22	25	28	2.00
47762698--47762965	47	5.8	45	75	12	175	28	18	29	23	1.98
47762695--47762967	46	5.9	45	76	10	201	28	18	29	23	1.98
47764047--47764085	21	1.9	21	89	5	62	12	38	28	20	1.89
47766428--47766461	16	2.0	16	88	11	50	38	0	2	58	1.13
47767941--47768201	138	1.9	138	84	3	346	28	10	7	53	1.62
47774261--47774310	15	3.5	14	76	17	50	40	2	0	58	1.10
47774263--47774310	7	6.7	7	79	11	53	39	2	0	58	1.10
47779792--47779833	22	1.9	22	90	0	66	61	9	9	19	1.53
47782352--47782393	20	2.2	19	87	12	59	45	0	0	54	0.99
47782336--47782390	18	3.0	18	77	15	58	47	1	0	50	1.11
47788501--47788537	19	1.9	19	100	0	74	18	16	16	48	1.81
47791152--47791223	25	2.9	25	89	0	99	33	20	29	16	1.95
47793760--47793858	38	2.6	37	79	4	108	37	3	10	49	1.52
47795765--47795946	93	2.0	93	91	0	292	29	20	21	29	1.98
47798614--47798654	20	2.0	20	90	0	64	43	17	26	12	1.84
47804002--47804184	79	2.3	81	84	7	232	24	23	27	24	2.00
47804003--47804186	40	4.6	39	82	9	203	23	23	28	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47804055--47804219	79	2.1	79	84	6	210	25	21	27	24	1.99
47812154--47812338	40	4.6	39	81	6	194	24	22	28	24	2.00
47812207--47812371	79	2.1	79	83	6	201	26	21	27	24	1.99
47815709--47815828	50	2.3	52	85	2	163	39	12	15	33	1.84
47815848--47815923	39	1.9	39	89	0	116	47	11	7	32	1.69
47821312--47821445	46	3.0	43	77	14	130	29	28	18	23	1.98
47835220--47835349	55	2.4	54	81	1	152	36	20	22	20	1.95
47835211--47835414	53	3.8	54	76	4	205	37	18	24	20	1.94
47845190--47845219	13	2.3	13	94	0	51	20	33	33	13	1.91
47847583--47847620	15	2.5	15	95	0	67	23	39	31	5	1.77
47853476--47853647	93	1.8	93	90	2	274	27	28	21	22	1.99
47853468--47853643	46	3.8	46	77	14	182	28	28	21	22	1.99
47853476--47853662	46	4.0	46	75	15	154	28	28	20	22	1.99
47856037--47856086	15	3.4	16	81	10	54	60	10	18	12	1.59
47856046--47856086	15	2.7	15	88	0	64	58	9	19	12	1.61
47856048--47856095	15	3.2	15	79	5	53	56	14	16	12	1.68
47866532--47866604	36	2.0	36	94	0	128	19	17	34	28	1.95
47869257--47869312	25	2.1	27	80	6	62	33	3	1	60	1.24
47869253--47869314	26	2.3	28	78	10	76	35	3	1	59	1.23
47878543--47878581	18	2.2	18	95	0	69	30	12	17	38	1.88
47887340--47887562	40	5.6	39	82	5	216	27	27	20	24	1.99
47887338--47887562	80	2.8	79	82	6	240	27	28	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47887340--47887562	120	1.9	119	83	4	288	27	27	20	24	1.99
47895247--47895468	40	5.6	39	82	6	207	27	27	20	24	1.99
47895245--47895468	80	2.8	79	82	6	231	27	28	20	24	1.99
47895247--47895468	120	1.9	118	82	5	277	27	27	20	24	1.99
47913162--47913214	23	2.4	21	75	6	52	73	0	11	15	1.09
47915311--47915507	100	2.0	100	93	0	340	25	20	24	28	1.99
47915316--47915504	49	3.8	49	83	2	234	26	19	25	28	1.99
47919055--47919404	43	8.1	43	95	0	610	31	33	24	10	1.90
47924213--47924300	32	2.8	30	84	10	104	64	0	2	32	1.06
47924247--47924298	15	3.3	15	82	10	68	67	0	0	32	0.91
47924247--47924301	16	3.5	15	81	16	67	63	0	0	36	0.95
47926197--47926307	40	2.8	40	83	1	98	25	28	23	22	1.99
47926220--47926364	40	3.6	41	85	6	190	23	25	24	26	2.00
47926184--47926364	81	2.3	79	81	2	202	23	25	24	25	2.00
47932368--47932447	41	1.9	41	87	7	117	28	13	22	35	1.92
47932373--47932463	42	2.2	41	78	9	96	29	14	23	32	1.94
47932373--47932530	87	1.9	83	81	5	190	29	16	22	31	1.96
47936406--47936444	18	2.2	18	90	0	60	38	7	12	41	1.72
47936413--47936451	18	2.2	18	85	0	51	38	5	12	43	1.65
47940180--47940231	26	2.0	27	84	3	70	40	1	0	57	1.10
47945242--47945302	20	3.0	20	85	2	68	13	24	22	39	1.90
47946884--47946989	43	2.5	42	81	6	133	18	20	16	44	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47946884--47947020	42	3.2	41	79	4	139	17	19	17	45	1.86
47951882--47952240	47	7.6	47	92	1	556	32	8	30	28	1.87
47954462--47954901	40	11.1	40	88	0	614	25	21	27	25	2.00
47958247--47958395	47	3.1	47	95	3	271	31	8	28	31	1.86
47958320--47958472	77	2.0	77	96	2	283	29	10	31	28	1.90
47958367--47958423	28	2.0	28	96	0	105	24	14	36	24	1.92
47958271--47958519	124	2.0	124	96	0	462	30	9	30	29	1.89
47958395--47958633	47	5.0	47	91	1	370	31	9	30	28	1.88
47964059--47964124	23	2.9	23	68	20	57	42	19	22	15	1.88
47964134--47964186	26	2.1	25	82	3	61	37	22	16	22	1.94
47965286--47965321	19	1.9	18	88	5	54	16	8	0	75	1.04
47965293--47965332	21	1.9	21	85	10	55	15	15	0	70	1.18
47967043--47967075	17	2.0	17	94	5	59	18	6	18	57	1.60
47967673--47967726	22	2.5	22	81	0	63	37	12	14	35	1.85
47971346--47971530	40	4.7	40	82	6	216	25	27	22	24	2.00
47971346--47971528	79	2.3	81	81	8	214	25	27	21	25	1.99
48009472--48009626	42	3.7	41	73	5	130	30	16	24	28	1.97
48032455--48032706	40	6.3	40	87	3	312	23	19	27	29	1.98
48040893--48041144	40	6.3	40	89	3	330	23	19	27	28	1.98
48050702--48050748	20	2.3	20	96	0	85	31	17	25	25	1.97
48051800--48051873	37	2.0	37	82	15	91	25	8	24	41	1.82
48053807--48053844	15	2.5	15	86	0	58	15	15	15	52	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48076831--48076919	30	3.0	30	79	8	92	58	15	16	8	1.62
48076831--48076910	15	5.4	15	79	7	83	60	13	17	8	1.58
48076842--48076919	15	5.2	15	78	6	70	57	15	16	10	1.64
48079872--48080047	46	3.8	46	73	15	146	30	27	19	22	1.98
48082452--48082498	16	2.9	16	84	6	60	59	2	38	0	1.09
48082738--48082774	20	1.9	19	89	10	58	16	37	24	21	1.93
48087383--48087431	24	2.0	24	96	0	89	40	8	18	32	1.80
48090860--48090891	10	3.1	10	95	4	55	59	0	40	0	0.97
48090862--48090926	4	14.8	4	73	23	51	67	0	30	1	1.00
48090861--48090892	11	3.0	11	95	4	57	62	0	37	0	0.95
48090862--48090931	15	4.8	13	80	18	68	67	0	31	1	1.00
48090861--48090926	19	3.4	19	82	16	66	66	0	31	1	1.01
48091379--48091408	15	1.9	16	93	6	53	33	0	26	40	1.57
48105920--48106096	40	4.4	40	89	2	250	22	20	30	26	1.98
48109880--48110008	46	2.8	46	91	0	204	19	20	29	31	1.97
48111312--48111511	40	5.0	40	90	1	287	23	21	28	27	1.99
48119487--48119744	40	6.5	40	92	1	403	22	22	28	26	1.99
48128052--48128189	40	3.5	39	88	3	199	27	21	26	24	1.99
48131353--48131425	35	2.1	35	92	5	123	39	8	5	46	1.57
48134828--48134964	47	2.9	47	96	1	247	24	24	4	45	1.71
48136306--48136349	20	2.3	19	92	4	70	22	27	0	50	1.50
48151493--48151832	39	8.6	39	91	4	485	25	22	27	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48159636--48159843	39	5.3	39	89	4	289	25	21	26	25	2.00
48162293--48162354	28	2.3	27	83	8	72	67	6	9	16	1.39
48164898--48164993	29	3.3	29	91	0	138	30	29	15	25	1.96
48169579--48169744	46	3.6	44	77	12	165	29	28	19	22	1.98
48169577--48169766	46	4.1	45	66	22	99	30	27	20	22	1.98
48171660--48171761	29	3.6	29	81	1	125	27	17	27	27	1.98
48173928--48174110	79	2.3	80	82	7	221	25	27	22	24	2.00
48173907--48174110	40	5.1	40	81	8	229	25	27	22	25	2.00
48175238--48175413	56	3.1	56	99	0	343	22	23	9	44	1.81
48181593--48181627	16	2.2	16	94	0	61	65	14	5	14	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333