Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  285  of  333  ( 39894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94238216--94238252
20
1.9
18
89
10
56
43
0
21
35
1.53
94238806--94238980
46
3.8
46
77
14
198
20
19
29
30
1.97
94238803--94238972
92
1.8
93
92
1
288
20
20
29
30
1.97
94239704--94239734
14
2.2
14
100
0
62
41
6
22
29
1.78
94245905--94246049
30
4.8
30
86
1
177
27
47
4
20
1.68
94246543--94246601
22
2.6
23
79
15
68
33
3
5
57
1.37
94246608--94246759
25
6.0
26
74
13
95
34
7
5
53
1.51
94246916--94246963
16
3.1
15
90
6
69
31
2
2
64
1.16
94246916--94246967
8
6.5
8
82
8
61
30
1
1
65
1.14
94248542--94248577
12
3.0
12
87
0
54
25
27
5
41
1.77
94248550--94248581
16
1.9
17
93
6
57
25
28
6
40
1.79
94256632--94258252
72
21.4
72
75
12
1159
29
16
20
33
1.95
94256632--94257336
222
3.2
220
89
4
1026
30
16
20
32
1.95
94257751--94257778
14
2.0
14
100
0
56
14
21
7
57
1.61
94257620--94258221
145
3.9
162
81
12
519
29
16
20
33
1.95
94257786--94258242
217
2.1
217
89
2
693
30
16
19
33
1.94
94257785--94258242
145
3.2
144
90
3
695
30
16
19
33
1.94
94258134--94258472
128
2.7
126
83
7
407
26
17
20
35
1.95
94258331--94258438
54
2.0
55
87
1
155
28
14
19
37
1.92
94258460--94258487
14
2.0
14
100
0
56
14
21
7
57
1.61
94258494--94258725
74
3.0
75
75
10
243
29
15
21
33
1.94
94258384--94258725
167
2.1
161
84
6
442
27
16
20
35
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94258384--94258725
159
2.1
162
84
6
451
27
16
20
35
1.94
94258571--94258727
85
1.8
85
84
0
215
28
14
21
35
1.93
94258883--94259163
77
3.7
77
89
3
385
25
17
20
36
1.94
94258883--94259203
77
4.2
77
86
4
359
24
18
20
36
1.94
94258877--94259202
152
2.2
152
80
6
367
24
18
20
36
1.95
94259194--94259230
14
2.8
13
84
8
56
10
13
8
67
1.41
94259996--94260139
30
4.8
30
82
5
166
27
46
4
22
1.70
94259996--94260139
59
2.4
60
81
6
159
27
46
4
22
1.70
94260629--94260758
23
5.5
23
68
17
63
35
5
3
56
1.38
94260694--94260765
25
2.8
26
79
6
85
36
5
2
55
1.38
94260720--94260813
29
3.4
27
73
12
77
30
5
6
57
1.46
94260796--94260844
25
2.0
25
87
0
71
32
8
8
51
1.61
94261003--94261050
16
3.1
15
90
6
69
31
2
2
64
1.16
94261003--94261054
8
6.5
8
82
8
61
30
1
1
65
1.14
94261721--94261754
17
2.1
15
89
10
50
64
0
0
35
0.94
94266723--94266874
43
3.5
42
78
8
128
28
17
22
32
1.96
94266748--94266859
42
2.6
44
76
12
117
30
14
21
33
1.93
94279636--94279787
43
3.5
43
81
3
171
23
18
27
30
1.98
94282403--94282437
9
3.8
9
85
7
52
37
11
20
31
1.88
94282401--94282444
19
2.3
19
96
0
79
36
11
22
29
1.89
94290878--94290930
24
2.2
25
82
3
63
28
22
30
18
1.98
94294614--94294650
3
12.3
3
94
0
65
35
0
2
62
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94294778--94294827
3
17.0
3
76
12
50
38
2
2
58
1.21
94295659--94295834
70
2.3
75
82
11
193
40
1
20
37
1.60
94296015--94296082
34
1.9
36
88
11
106
39
1
23
35
1.64
94296012--94296087
18
4.4
17
77
14
84
42
1
23
32
1.63
94296012--94296093
34
2.4
33
82
13
105
41
1
23
34
1.62
94296012--94296100
17
5.1
18
80
9
80
41
1
23
33
1.62
94296230--94296323
38
2.5
38
76
10
95
17
20
28
34
1.95
94297147--94297186
21
2.0
20
85
5
53
22
27
37
12
1.90
94298379--94298504
49
2.6
49
80
8
141
21
27
22
28
1.99
94298528--94298738
94
2.2
94
80
5
239
25
27
18
28
1.98
94298563--94298738
46
3.8
46
81
5
176
23
27
19
28
1.99
94298528--94298738
46
4.5
48
78
8
175
25
27
18
28
1.98
94302030--94302067
20
2.0
20
89
5
60
52
2
0
44
1.14
94308780--94308819
20
2.0
20
90
0
62
27
10
12
50
1.72
94308765--94308831
34
1.9
35
90
3
109
31
8
13
46
1.74
94308909--94308961
18
2.8
20
75
16
58
32
5
1
60
1.31
94309444--94309482
18
2.2
18
100
0
78
46
10
0
43
1.37
94311144--94311183
19
2.1
19
95
0
71
47
7
45
0
1.31
94312315--94312339
5
5.0
5
100
0
50
20
0
0
80
0.72
94320844--94320908
21
3.2
19
77
14
58
6
16
1
75
1.08
94320857--94320910
21
2.5
23
80
14
62
5
16
1
75
1.07
94323386--94323438
27
2.0
27
96
0
97
79
7
1
11
1.01
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94337807--94337846
19
2.2
18
86
13
55
30
22
0
47
1.52
94338244--94338284
10
4.3
10
81
12
50
31
24
0
43
1.54
94338490--94338538
15
3.3
15
85
0
71
51
12
2
34
1.51
94339484--94339540
21
2.6
22
73
15
64
66
5
0
28
1.13
94344424--94344459
13
2.8
14
84
16
51
27
25
0
47
1.52
94344404--94344466
26
2.5
25
80
14
60
28
23
0
47
1.52
94344411--94344451
18
2.2
19
87
12
59
29
24
0
46
1.53
94344552--94344647
27
3.7
25
75
21
83
41
38
3
16
1.64
94344579--94344646
28
2.4
29
80
14
88
41
38
2
17
1.65
94344848--94344888
10
4.3
10
81
12
50
31
24
0
43
1.54
94345094--94345143
15
3.3
15
82
0
73
50
12
2
36
1.51
94345274--94345316
18
2.4
18
84
7
52
81
0
6
11
0.87
94346577--94346602
7
3.7
7
100
0
52
84
0
0
15
0.62
94348624--94348667
19
2.3
19
96
0
79
20
20
18
40
1.91
94350757--94350786
6
5.0
6
91
0
51
50
13
33
3
1.58
94352636--94352859
88
2.6
87
91
2
342
29
17
25
27
1.98
94352821--94353625
44
18.4
44
89
1
1177
27
17
32
21
1.96
94355126--94355163
19
2.0
19
100
0
76
31
26
10
31
1.90
94355239--94355264
7
3.7
7
100
0
52
84
0
0
15
0.62
94357204--94357268
19
3.4
19
87
4
60
23
20
12
44
1.84
94357205--94357255
24
2.1
24
82
7
59
23
21
13
41
1.89
94357221--94357269
19
2.6
19
93
0
80
24
18
12
44
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94359367--94359396
6
5.0
6
91
0
51
50
13
33
3
1.58
94361243--94361466
88
2.6
87
89
2
324
28
17
25
27
1.98
94361428--94361788
44
8.4
44
88
4
540
27
16
32
23
1.96
94361462--94361788
168
1.9
169
91
0
539
27
15
32
23
1.95
94363285--94363322
19
2.0
19
100
0
76
31
26
10
31
1.90
94363398--94363423
7
3.7
7
100
0
52
84
0
0
15
0.62
94371918--94372051
43
3.1
43
86
0
196
27
25
18
28
1.98
94372071--94372113
22
1.9
23
85
4
61
37
0
4
58
1.19
94388625--94388695
35
2.0
35
100
0
142
45
5
2
46
1.41
94390452--94390484
16
2.1
16
100
0
66
57
0
12
30
1.35
94396527--94396557
3
10.3
3
100
0
62
67
0
32
0
0.91
94396643--94396802
80
2.0
80
100
0
320
33
21
20
25
1.97
94397062--94397169
56
1.9
55
92
1
180
40
8
12
38
1.72
94401023--94401059
15
2.5
15
95
0
65
27
13
21
37
1.91
94401144--94401196
23
2.3
24
87
6
74
20
16
11
50
1.76
94401541--94401574
15
2.3
15
89
0
50
44
11
29
14
1.81
94401900--94402010
56
2.0
56
84
6
147
44
8
8
39
1.64
94404640--94404692
18
2.9
18
75
13
54
58
5
0
35
1.22
94405897--94405922
3
8.7
3
100
0
52
0
30
0
69
0.89
94410328--94410406
36
2.2
35
80
14
90
62
1
1
35
1.12
94410349--94410491
18
7.6
18
70
18
87
65
0
3
30
1.14
94410411--94410487
22
3.7
22
74
13
63
67
1
5
25
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94410350--94410487
40
3.3
41
78
14
124
67
0
3
28
1.12
94410296--94410491
10
20.9
9
70
18
73
63
1
4
31
1.19
94410644--94410725
10
8.2
10
71
10
60
32
4
1
60
1.25
94427756--94428191
47
9.3
47
92
0
710
33
8
29
27
1.87
94434798--94434840
18
2.4
17
82
17
52
65
0
4
30
1.13
94450295--94450389
50
1.9
50
80
4
111
33
20
25
21
1.97
94450974--94451181
99
2.1
100
89
5
314
38
18
7
36
1.78
94455870--94455911
19
2.2
20
87
12
61
16
7
0
76
1.00
94457442--94457476
18
2.0
18
94
5
63
45
0
0
54
0.99
94458439--94458493
18
3.2
17
76
19
60
5
34
0
60
1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333