genome.fa.s3.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  134  of  333  ( 39894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43636189--43636251	30	2.1	30	100	0	126	47	17	26	7	1.75
43641350--43641575	50	4.5	50	75	9	192	24	17	26	30	1.97
43641349--43641534	101	1.8	101	84	2	257	24	18	27	30	1.98
43641349--43641575	101	2.3	99	80	6	244	24	17	27	30	1.97
43652617--43652676	30	2.0	30	90	0	93	28	25	6	40	1.80
43667553--43667923	94	3.9	94	75	10	285	26	19	30	23	1.98
43667558--43667922	49	7.7	49	79	10	248	26	19	30	23	1.98
43674166--43674249	37	2.3	37	85	0	105	29	20	25	25	1.99
43674230--43674457	48	4.8	48	92	0	359	25	17	26	30	1.98
43680539--43680663	40	3.2	40	90	3	182	27	28	20	24	1.99
43685433--43685493	30	2.0	30	87	0	86	40	4	24	29	1.76
43686025--43686270	64	3.8	64	81	5	282	31	15	29	23	1.95
43687603--43687641	20	1.9	21	89	5	62	23	10	20	46	1.81
43698890--43698982	46	2.0	46	93	0	159	34	22	8	34	1.85
43702513--43702578	33	2.0	34	90	3	107	25	28	22	22	1.99
43721292--43721345	23	2.4	22	81	9	65	24	24	18	33	1.97
43735050--43735169	56	2.1	56	96	0	222	45	9	22	22	1.80
43736586--43736867	49	5.9	48	92	3	435	32	8	29	28	1.87
43736581--43736867	96	3.0	96	91	4	436	32	8	29	28	1.87
43736685--43736762	22	3.3	22	65	22	59	32	10	30	26	1.90
43736586--43736867	145	1.9	145	92	1	476	32	8	29	28	1.87
43738729--43738835	47	2.3	47	85	0	142	28	31	9	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43738777--43738897	62	2.0	62	98	0	233	31	28	7	33	1.85
43738820--43738850	15	2.1	15	100	0	62	38	22	0	38	1.54
43738793--43738891	31	3.2	30	65	21	78	29	29	9	32	1.88
43741213--43741320	47	2.3	47	91	0	171	36	7	30	25	1.84
43752826--43753185	47	7.7	47	72	14	192	28	19	29	22	1.98
43752826--43753187	94	3.9	94	78	7	373	28	19	29	22	1.98
43752826--43753187	141	2.6	140	77	9	380	28	19	29	22	1.98
43759075--43759135	30	2.0	30	87	0	86	34	18	24	22	1.96
43759480--43759835	47	7.6	45	73	13	233	29	19	28	22	1.98
43759477--43759839	140	2.6	139	74	13	361	29	19	28	22	1.98
43762345--43762498	28	5.5	28	97	0	274	33	28	11	25	1.91
43770598--43770748	28	5.4	28	92	1	223	33	28	11	25	1.92
43775067--43775287	47	4.7	47	76	12	181	23	28	18	29	1.98
43775114--43775286	93	1.9	94	86	3	251	23	26	19	31	1.98
43782596--43782776	47	3.9	48	75	14	175	23	28	17	30	1.97
43784526--43784640	29	4.0	29	76	5	117	25	32	14	27	1.95
43784532--43784640	58	1.9	57	81	9	132	23	33	15	27	1.95
43784860--43784930	8	8.9	8	82	0	70	5	18	23	52	1.67
43784860--43784930	24	3.0	24	93	0	106	5	18	23	52	1.67
43786831--43786963	49	2.7	49	77	0	131	29	15	27	28	1.96
43788989--43789210	40	5.6	40	91	1	349	27	26	23	22	2.00
43793229--43793450	40	5.6	40	90	1	331	27	26	23	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43798223--43798618	3	133.3	3	68	14	137	61	3	7	27	1.38
43798267--43798308	17	2.5	17	80	7	50	69	0	7	23	1.13
43798240--43798317	29	2.7	29	77	20	90	69	0	6	24	1.12
43798246--43798386	37	3.8	40	64	26	62	66	0	7	25	1.21
43798295--43798334	14	3.2	13	83	16	57	62	2	5	30	1.29
43798243--43798404	26	6.0	27	69	15	86	66	0	7	25	1.22
43800252--43800587	44	7.6	44	62	12	127	22	23	21	33	1.98
43800259--43800596	88	3.8	88	86	2	475	22	23	22	32	1.98
43816478--43816509	9	3.7	9	95	4	57	43	12	21	21	1.86
43816874--43816916	22	2.0	22	81	9	52	16	23	4	55	1.59
43820365--43820789	3	141.7	3	68	14	173	61	3	7	27	1.38
43820365--43820602	44	5.4	44	74	17	158	63	0	7	27	1.27
43820365--43820787	20	21.6	20	65	20	80	61	3	7	27	1.38
43820447--43820486	14	3.2	13	83	16	57	62	2	5	30	1.29
43821274--43821307	17	2.0	17	94	0	59	35	20	0	44	1.52
43826650--43826696	23	2.0	23	100	0	94	29	21	21	27	1.98
43832652--43832726	37	2.0	37	87	5	107	26	30	21	21	1.98
43832849--43833333	47	10.3	47	92	0	781	28	29	8	32	1.87
43838746--43838770	9	2.8	9	100	0	50	20	0	0	80	0.72
43839999--43840216	47	4.7	45	75	17	153	24	17	31	25	1.97
43839901--43840216	93	3.4	93	78	5	334	25	18	31	25	1.98
43840510--43840630	40	3.0	40	100	0	242	29	12	9	47	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43843504--43843553	26	2.0	26	88	4	75	30	22	20	28	1.98
43845003--43845221	46	4.7	46	80	7	196	28	20	29	21	1.98
43846387--43846414	13	2.2	13	100	0	56	28	17	39	14	1.89
43848718--43848881	46	3.5	47	82	8	201	25	28	16	29	1.97
43848627--43848881	140	1.8	140	83	5	336	25	28	16	29	1.97
43855709--43855823	46	2.5	43	85	12	142	28	18	29	23	1.98
43855614--43855971	140	2.5	142	81	8	401	27	17	30	24	1.97
43861178--43861214	18	2.2	18	85	9	51	70	2	0	27	1.01
43862542--43862602	20	3.1	20	76	17	56	1	18	6	73	1.12
43875941--43875978	19	2.0	19	85	10	51	68	0	10	21	1.19
43877899--43877948	26	1.9	26	100	0	100	38	20	10	32	1.85
43887435--43887486	27	1.9	27	84	7	70	28	3	5	61	1.37
43890224--43890404	28	6.5	28	98	0	328	34	28	11	25	1.91
43911542--43911798	43	6.1	43	77	13	164	30	27	15	26	1.96
43911563--43911796	126	1.8	126	85	3	326	29	26	16	26	1.97
43912095--43912125	15	2.1	15	93	0	53	48	22	0	29	1.51
43912599--43912624	6	4.3	6	100	0	52	0	15	0	84	0.62
43920926--43921111	48	3.9	48	84	0	228	24	28	18	28	1.98
43920857--43921111	96	2.6	96	79	3	244	23	27	20	29	1.98
43924494--43924671	91	2.0	90	92	1	293	23	13	24	39	1.90
43928229--43928261	6	5.7	6	92	3	50	15	9	0	75	1.03
43934179--43934224	21	2.2	21	84	0	56	19	23	41	15	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43935407--43935688	48	5.9	48	78	2	289	25	26	18	29	1.98
43935405--43935688	96	2.9	96	89	0	424	25	27	18	29	1.98
43935408--43935678	144	1.9	145	82	3	341	25	26	18	29	1.98
43937449--43937666	48	4.5	48	88	1	276	24	29	18	27	1.98
43945095--43945571	48	9.9	48	77	1	436	25	25	18	29	1.98
43945098--43945571	96	4.9	96	86	1	608	26	25	18	29	1.98
43945093--43945571	144	3.3	144	81	1	530	26	25	18	29	1.98
43945095--43945571	192	2.5	192	87	0	684	25	25	18	29	1.98
43959769--43959990	39	5.6	39	84	8	224	25	27	21	25	1.99
43959769--43959990	79	2.8	78	84	9	256	25	27	21	25	1.99
43967675--43967898	79	2.8	78	83	6	272	25	27	21	25	1.99
43967675--43967898	40	5.7	40	87	6	280	25	27	21	25	1.99
43969899--43969935	17	2.2	17	100	0	74	16	13	27	43	1.85
43972638--43972762	19	6.3	19	69	12	65	63	3	4	29	1.28
43972679--43972780	38	2.6	38	77	10	100	65	2	3	27	1.24
43972769--43972840	28	2.5	28	78	13	67	58	1	9	30	1.39
43972696--43972842	9	15.7	9	67	17	59	61	2	6	29	1.34
43977091--43977447	190	1.9	176	85	7	480	52	3	5	38	1.43
43986445--43986488	21	2.1	21	82	0	52	2	18	4	75	1.09
43988823--43988855	15	2.1	16	88	5	50	0	33	9	57	1.30
43997358--43997424	21	3.3	21	78	16	79	26	37	4	31	1.77
43997369--43997426	18	3.1	18	79	13	71	27	36	5	31	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44007021--44007193	46	3.7	46	77	14	185	21	19	27	30	1.98
44007018--44007188	93	1.8	93	92	2	290	21	19	28	29	1.98
44008888--44008998	47	2.4	47	83	6	145	36	23	15	25	1.94
44017786--44018052	40	6.7	40	94	0	471	29	20	27	21	1.98
44036200--44036237	14	2.8	14	92	4	60	21	34	7	36	1.82
44045016--44045283	27	9.9	27	89	0	356	29	19	7	42	1.79
44045271--44045450	27	6.7	27	81	6	170	42	20	6	30	1.78
44045271--44045426	52	2.9	52	80	6	170	42	22	5	29	1.77
44045271--44045428	79	2.0	80	88	5	239	41	22	5	29	1.77
44045472--44045713	27	9.0	27	92	0	358	35	19	21	23	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333