Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  14  of  333  ( 39894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3990216--3990603
202
1.9
202
80
11
447
32
20
21
26
1.98
3991839--3991874
15
2.3
16
90
4
56
30
8
0
61
1.26
3991908--3991959
18
2.9
17
78
18
61
30
5
5
57
1.46
3994559--3994590
10
3.2
10
90
0
55
53
0
0
46
1.00
4016524--4016569
23
2.0
23
100
0
92
26
13
17
43
1.85
4016675--4016741
33
2.0
33
100
0
134
41
16
8
32
1.79
4018553--4018615
20
3.2
20
76
0
72
52
19
1
26
1.55
4018598--4018694
48
2.0
49
82
6
117
45
14
5
35
1.67
4023162--4023251
44
2.0
44
97
0
171
33
13
14
38
1.85
4033974--4034001
7
4.0
7
100
0
56
0
28
0
71
0.86
4037455--4037497
19
2.2
20
84
8
54
74
0
0
25
0.82
4037471--4037536
19
3.4
19
79
8
62
57
0
0
42
0.98
4037502--4037530
11
2.6
11
100
0
58
44
0
0
55
0.99
4037483--4037552
9
7.3
9
75
10
59
57
0
1
41
1.08
4040159--4040223
22
3.0
21
75
8
60
53
3
4
38
1.37
4040159--4040250
42
2.1
43
82
4
105
51
4
5
39
1.45
4049035--4049067
16
2.1
16
94
0
57
36
12
24
27
1.91
4052912--4052941
15
2.0
15
93
0
51
33
16
3
46
1.64
4054812--4054919
44
2.4
44
87
3
144
29
23
13
33
1.93
4055887--4055920
9
3.9
9
84
7
52
2
17
0
79
0.86
4055887--4055920
17
2.0
17
94
0
59
2
17
0
79
0.86
4055929--4056001
5
14.6
5
76
20
64
54
4
1
39
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4055930--4055972
19
2.3
19
92
8
70
55
0
2
41
1.12
4055936--4056000
24
2.7
24
80
9
69
56
4
1
36
1.29
4065339--4065495
80
2.0
80
96
0
287
47
4
7
40
1.52
4067593--4067640
21
2.3
21
96
3
89
52
6
0
41
1.27
4067593--4067647
21
2.6
21
91
5
76
54
5
0
40
1.23
4068360--4068415
29
2.0
29
93
6
98
48
8
10
32
1.69
4083871--4083905
18
1.9
18
88
11
54
54
0
0
45
0.99
4083989--4084024
11
3.3
11
88
0
54
66
8
2
22
1.31
4091563--4091595
12
2.8
12
95
0
57
30
21
0
48
1.50
4134633--4134666
12
2.8
12
86
0
50
29
17
0
52
1.45
4144381--4144427
19
2.5
20
82
6
62
40
10
21
27
1.86
4146838--4147053
116
1.8
121
85
6
307
59
5
4
31
1.38
4147134--4147186
12
4.5
13
73
20
53
62
5
1
30
1.29
4147261--4147351
3
30.3
3
70
18
57
65
1
4
28
1.18
4147261--4147341
12
6.8
12
72
12
69
64
1
4
29
1.22
4147760--4147819
13
4.7
13
68
4
50
20
15
50
15
1.79
4147758--4147840
38
2.2
38
100
0
166
20
12
50
16
1.77
4153109--4153170
25
2.4
26
81
8
72
61
14
12
11
1.57
4156588--4156615
10
2.8
10
100
0
56
50
0
17
32
1.47
4160687--4160787
39
2.6
39
90
0
148
12
23
23
39
1.90
4160700--4160769
21
3.5
20
75
13
72
11
22
22
42
1.85
4163695--4163724
12
2.4
13
94
5
53
36
6
0
56
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4164582--4164620
17
2.4
17
82
4
53
25
0
10
64
1.25
4170286--4170326
21
2.0
21
90
0
64
29
21
29
19
1.98
4181561--4181719
46
3.7
45
83
12
203
27
22
16
34
1.95
4181646--4181822
37
4.8
37
94
0
291
25
21
13
38
1.90
4189260--4189418
46
3.7
45
83
12
203
27
22
16
34
1.95
4189345--4189521
37
4.8
37
94
0
291
25
21
13
38
1.90
4194427--4194484
25
2.3
25
80
11
73
55
12
13
18
1.69
4195330--4195375
20
2.3
20
85
3
58
50
2
6
41
1.40
4195368--4195632
120
2.2
120
79
6
268
35
18
8
37
1.81
4195755--4195815
20
3.0
20
71
17
54
44
8
3
44
1.50
4204505--4204547
18
2.3
19
84
8
52
55
4
4
34
1.41
4205917--4205959
22
2.0
20
82
8
50
27
6
2
62
1.33
4210151--4210211
21
2.8
23
85
14
94
34
27
24
13
1.93
4210143--4210223
21
3.7
23
80
9
80
37
25
22
14
1.93
4210591--4210648
15
3.8
15
88
2
89
51
12
0
36
1.39
4211921--4211960
5
8.0
5
100
0
80
60
0
0
40
0.97
4211985--4212013
8
3.6
8
100
0
58
62
0
0
37
0.96
4214200--4214287
21
4.1
21
81
5
95
38
25
20
15
1.92
4214658--4214715
15
3.8
15
88
2
89
51
12
0
36
1.39
4215940--4215979
20
2.0
21
90
5
64
5
17
7
70
1.30
4216026--4216054
8
3.6
8
100
0
58
62
0
0
37
0.96
4216758--4216883
33
3.8
33
87
3
139
34
22
7
35
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4216755--4216841
33
2.6
33
96
0
156
32
19
9
39
1.83
4216827--4216891
32
2.0
33
87
3
96
36
24
10
27
1.89
4222183--4222336
51
3.0
51
91
0
236
31
14
23
30
1.94
4224217--4224262
9
4.9
10
74
15
53
36
0
0
63
0.95
4224202--4224262
19
3.3
18
83
4
68
39
0
0
60
0.97
4233008--4233063
21
2.5
22
80
5
69
67
5
0
26
1.11
4233293--4233330
19
2.0
19
85
10
51
63
0
2
34
1.09
4235891--4235928
18
2.2
18
85
4
51
71
2
0
26
1.00
4238599--4238639
21
2.0
20
85
4
55
41
0
0
58
0.98
4246295--4246471
87
2.0
87
98
0
345
34
16
9
39
1.81
4254026--4254058
16
2.1
16
100
0
66
60
12
27
0
1.32
4254880--4254929
26
1.9
26
100
0
100
48
20
8
24
1.76
4265678--4265731
26
2.1
26
82
3
74
42
1
3
51
1.30
4265776--4265810
18
2.0
17
88
5
52
45
0
0
54
0.99
4265659--4265951
120
2.4
120
89
3
439
44
1
5
48
1.35
4265896--4265949
16
3.4
17
77
12
51
48
0
1
50
1.11
4265909--4265940
15
2.1
15
94
0
55
56
0
0
43
0.99
4266165--4266232
16
4.2
16
92
0
118
39
33
0
26
1.57
4266384--4266417
18
1.9
17
94
5
59
44
0
0
55
0.99
4269423--4269457
2
17.5
2
100
0
70
0
51
0
48
1.00
4273324--4273417
46
2.0
46
97
0
179
38
21
8
31
1.83
4274802--4274849
21
2.3
21
85
0
60
35
25
14
25
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4275715--4275786
18
3.9
18
75
10
58
44
1
0
54
1.08
4279541--4279573
11
2.9
12
86
13
52
66
0
0
33
0.92
4287851--4287885
6
5.8
6
100
0
70
31
0
0
68
0.90
4298286--4298413
64
2.0
64
98
0
247
17
28
10
42
1.83
4299095--4299124
11
2.7
11
100
0
60
30
0
6
63
1.20
4300613--4300777
82
2.0
82
100
0
330
33
9
19
37
1.84
4304146--4304212
23
3.0
22
66
23
57
28
8
20
41
1.83
4304137--4304265
46
2.8
46
92
0
213
27
6
21
44
1.78
4304145--4304216
22
3.2
22
67
21
67
29
8
19
43
1.80
4304660--4304712
15
3.7
14
80
9
54
41
11
3
43
1.58
4304660--4304712
14
3.7
15
82
7
56
41
11
3
43
1.58
4308958--4308996
18
2.1
18
85
4
51
56
2
2
38
1.27
4308968--4309002
18
1.9
18
88
0
52
62
0
0
37
0.95
4309521--4309597
29
2.6
31
80
14
90
46
1
2
49
1.23
4310408--4310458
25
2.0
26
81
7
61
29
1
3
64
1.22
4315182--4315230
24
2.1
23
88
7
73
48
2
6
42
1.39
4322081--4322144
30
2.1
30
82
0
74
46
7
1
43
1.42
4330789--4330825
20
1.9
20
88
5
58
40
0
8
51
1.32
4332853--4332899
25
2.0
24
87
8
69
12
27
21
38
1.90
4332831--4332911
25
3.4
23
73
17
58
13
32
23
30
1.93
4332973--4333134
23
6.9
23
74
11
114
15
28
23
32
1.95
4336094--4336126
13
2.4
14
85
15
50
0
12
15
72
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4336441--4336471
15
2.1
14
94
5
53
54
6
3
35
1.42
4336458--4336526
21
3.4
20
71
16
70
55
7
1
36
1.37
4340819--4340867
18
2.8
17
81
6
53
32
8
4
55
1.48
4341450--4341497
23
1.9
27
84
16
68
27
4
0
68
1.07
4343406--4343472
34
1.9
35
87
3
100
31
7
13
47
1.70
4343400--4343476
14
5.0
15
71
20
52
33
7
14
44
1.74
4350687--4350720
16
2.1
16
88
0
50
32
14
2
50
1.58
4350955--4351013
30
2.0
30
86
0
82
32
11
11
44
1.78
4353063--4353093
16
1.9
16
93
0
53
41
9
0
48
1.36
4356548--4356577
15
2.0
15
100
0
60
40
20
20
20
1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333